mRNA_C-linearis_contig1.100.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig1.100.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI) HSP 1 Score: 323 bits (828), Expect = 8.590e-111 Identity = 170/199 (85.43%), Postives = 178/199 (89.45%), Query Frame = 1
Query: 1 MPSTLSKLYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNGGATALHLSVFNKHLAVSKALVKAGADLEARIYHHQALGVDGTPLHVAAAKGFHEGMVVLIHAGANVDAVHAISWCWPSAFEKSTPIVRMLPGLKRRATKPRVLLAALSRYNNKQDGPFLGYSPDQNGE 597
MPSTLSKLY AAA GSVERTVA+LSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLR GARVSVADN GATALHLS+ KHLAVS+ALVKAGA +EAR GVDGTPLHVAAAKGFH+GMV+LIH VDAVHAISWCWPSA EKS PIVR+LPGLKRRATKP VLLAALSRYNNKQDGPFLGYSPD+NGE
Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIH----VDAVHAISWCWPSALEKSKPIVRVLPGLKRRATKPCVLLAALSRYNNKQDGPFLGYSPDKNGE 188
BLAST of mRNA_C-linearis_contig1.100.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI) HSP 1 Score: 218 bits (554), Expect = 4.160e-69 Identity = 116/134 (86.57%), Postives = 122/134 (91.04%), Query Frame = 1
Query: 1 MPSTLSKLYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNGGATALHLSVFNKHLAVSKALVKAGADLEARIYHHQALGVDGTPLHVAAAKGFHEGMVVLIHAG 402
MPSTLSKLY AAA GSVERTVA+LSQGSV+IDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADN GATALHLS+ NKHLAVSKALVKAGA +EAR GVDGTPLHVAAAKGFH+GMV+LIHAG
Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAG 127
BLAST of mRNA_C-linearis_contig1.100.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 227 bits (578), Expect = 3.580e-66 Identity = 120/139 (86.33%), Postives = 126/139 (90.65%), Query Frame = 1
Query: 1 MPSTLSKLYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNGGATALHLSVFNKHLAVSKALVKAGADLEARIYHHQALGVDGTPLHVAAAKGFHEGMVVLIHAGANVDA 417
MPSTLSKLYHA A GSVERTVA+LSQGSVDIDGGYGDVGRTPLMAA TMGYLRVVRVLLRLGARVSVADN GATALHLS+ NKHLAVSKALVKAGA +EAR GVDGTPLHVAAAKGFH+GMV+LIHAGANVD+
Sbjct: 1 MPSTLSKLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAGANVDS 132
BLAST of mRNA_C-linearis_contig1.100.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 186 bits (471), Expect = 6.970e-54 Identity = 135/365 (36.99%), Postives = 140/365 (38.36%), Query Frame = 1
Query: 136 ASTMGYLRVVRVLLRLGARVSVADNGGATALHLSVFNKHLAVSKALVKAGADLEARIYHHQALGVDGTPLHVAAAKGFHEGMVVLIHAGAN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VDAVHAISWCWPSAFEKSTPIVRMLPGLKRRATKPRVLLAALSRYNNKQDGPFLGYSPDQNG 594
ASTMGYLRVVRVLLRLGARVS ADN GATALHLS+ NKHLAVSKALVKAGADLEARI HHQALGV TPLHVAAAKGFH+GMV+LIHAG VDAVHA SWCWPSA EKSTPIVRMLPGLKRRATKPRV LA LSRYNNKQDGPFLGY+P +NG
Sbjct: 38 ASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAGVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGVVDAEGIALCAAVEGRREECIELLLRTQGCNANAIARAYANMTHDTTLPMYSNQLFPDTPLVSAFELGGFYSPRITRLLLGAGADVASRVRYEGIEGDCVMHDTPLTIAESTLPLWETYGETSEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVALAPLSRYNNKQDGPFLGYTPSKNG 402
BLAST of mRNA_C-linearis_contig1.100.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 178 bits (451), Expect = 2.110e-48 Identity = 141/393 (35.88%), Postives = 157/393 (39.95%), Query Frame = 1
Query: 37 ARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNGGATALHLSVFNKHLAVSKALVKAGADLEAR------IYHHQALGVDG------TPLHVAAAKG---------------------------------------------------------------------------FHEGMV---------------------------------------------------------------------------VLIHAGANV------------------------------------------------------DAVHAISWCWPSAFEKSTPIVRMLPGLKRRATKPRVLLAALSRYNNKQDGPF 567
ARGSVERTVALLS+GSVDIDG YGD GRTPLM ASTMGYLRV RVLLRLGA VSVADN GATALHLSVFN+HLAVSKAL+KAGA++EAR + H VD TPL+ +A +G F G+V +L+ AGA+V DAVHAISWCWP+A EKSTPIVRMLPGLKRRATKPRV+LAALSRYN+KQDGP
Sbjct: 5 ARGSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVEARCVDGMVVLIHAGANVDSEQESGATPLYTSARQGRLEDVKVLVGTKANPLVPAYDGESLPLDAAAENGYLGVVRELVQRFGIDGCSRDGGAQALVEAASQNQTDIVTFLFDNGVVDAEGIALCAAVEGRREEFVKLLLRRQGCNANTSTRAYANMAHDSTLPMYSNQLFQDTPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETYGETSEDVEFGLKGVIRLLKQVDAVHAISWCWPNALEKSTPIVRMLPGLKRRATKPRVVLAALSRYNDKQDGPL 397
BLAST of mRNA_C-linearis_contig1.100.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 132 bits (333), Expect = 2.170e-33 Identity = 79/143 (55.24%), Postives = 104/143 (72.73%), Query Frame = 1
Query: 1 MPSTLSK-LYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNGGATALHLSVFNKHLAVSKALVKAGADLEAR--IYHHQALGVDG-TPLHVAAAKGFHEGMVVLIHAGANVDA 417
+PST S LY AA+ GSVERT+ LLS G +ID + G T LM A+ GYLR+VRVLLR GA VSV+ + G TALH ++ ++LAV+KAL+KAGA++EA+ + ++ V G TPLH+AA +GF EGMV LI+AGANVD+
Sbjct: 13 VPSTTSDTLYCAASSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDS 155
BLAST of mRNA_C-linearis_contig1.100.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 120 bits (300), Expect = 1.610e-30 Identity = 75/131 (57.25%), Postives = 89/131 (67.94%), Query Frame = 1
Query: 1 MPSTLSKLYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNGGATALHLSVFNKHLAVSKALVKAGADLEARIYHHQALGVDGTPLHVAAAKGFHEGMVVLI 393
MPSTLSK A GS++ T+A + ID G GD +TPLM AS +G RVVR LLR GA VSVAD+ G TALH SV++ HLAVSK L++AGADLEAR H G TPLHVAA KGF +GM +L+
Sbjct: 1 MPSTLSK-----ASGSIDPTIA-----TTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEAR---H---GGKDTPLHVAATKGFCQGMKLLM 115
BLAST of mRNA_C-linearis_contig1.100.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.660e-21 Identity = 61/101 (60.40%), Postives = 71/101 (70.30%), Query Frame = 1
Query: 1 MPSTLSKLYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNGGATALHLSVFNKHLAVSKALVKAGADLEAR 303
MPSTLSK A GSVER VA + DID GD TPLM AS +G RVV+ LLR GA VSVAD+ G TALH SV+++HLAVS +L++AGADLEAR
Sbjct: 1 MPSTLSK-----ASGSVERAVA-----TTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEAR 91
BLAST of mRNA_C-linearis_contig1.100.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.720e-19 Identity = 64/142 (45.07%), Postives = 77/142 (54.23%), Query Frame = 1
Query: 1 MPSTLSKLYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNGG--ATALHLSVFNKHLAVSKALVKAGADLEARIYHHQALGVDG-TPLHVAAAKGFHEGMVVLIHAGANVDA 417
MPST S LY+AA GSVERT+ LLS G +ID + G T LM A+ GYLR+VRVLLR GA VSV+ + G +A H V G TPLH+A +GF +GMV LI AGANVD+
Sbjct: 1 MPSTTSTLYNAAWTGSVERTLDLLSDGFTEIDRRCEENGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXKADFLHPDQEVVQGQTPLHLATGEGFCDGMVALIDAGANVDS 142
BLAST of mRNA_C-linearis_contig1.100.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 8.190e-16 Identity = 55/136 (40.44%), Postives = 75/136 (55.15%), Query Frame = 1
Query: 262 SKALVKAGADLEARIYH-------HQALGVDGTPLHVA-------AAKGFHEGMVV----LIHAGANVDAVHAISWCWP---------SAFEKSTPIVRMLPGLKRRATKPRVLLAALSRYNNKQDGPFLGYSPDQ 588
++ L++AGAD + + + G GTPL +A ++ H MV +I +AVH++SW WP ++ +K T I RM+P LKRRA KPRVLLAALSRYN KQDG FLGY P++
Sbjct: 346 ARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSSMSVHREMVPELKGVIRLLRQEEAVHSVSWTWPIDNGRSVERASRKKPTSIARMVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEK 481 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig1.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig1.100.1 >prot_C-linearis_contig1.100.1 ID=prot_C-linearis_contig1.100.1|Name=mRNA_C-linearis_contig1.100.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=200bp MPSTLSKLYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGback to top mRNA from alignment at C-linearis_contig1:1468555..1469962- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig1.100.1 ID=mRNA_C-linearis_contig1.100.1|Name=mRNA_C-linearis_contig1.100.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1408bp|location=Sequence derived from alignment at C-linearis_contig1:1468555..1469962- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig1:1468555..1469962- >mRNA_C-linearis_contig1.100.1 ID=mRNA_C-linearis_contig1.100.1|Name=mRNA_C-linearis_contig1.100.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at C-linearis_contig1:1468555..1469962- (Chordaria linearis ClinC8C monoicous)back to top |