mRNA_A-nodosum_M_contig10318.2.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 113 bits (283), Expect = 3.710e-28 Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1
Query: 1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
+VK+K+WFAT Q DA GR+CHPVEHKVLA LTILGRGN F SIY LSWMS+ VQ FH+FCEHFATE
Sbjct: 102 LVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATE 169
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE) HSP 1 Score: 107 bits (268), Expect = 2.100e-27 Identity = 49/68 (72.06%), Postives = 54/68 (79.41%), Query Frame = 1
Query: 1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
+VK K WF TA D GR HPVEHKVLA LTILGRGNCF+SIY +SWMS+A VQA FHKFC+HFA E
Sbjct: 100 LVKSKNWFVTAGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFARE 167
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 110 bits (275), Expect = 3.110e-27 Identity = 51/68 (75.00%), Postives = 56/68 (82.35%), Query Frame = 1
Query: 1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
+VK K WFATA DA GRQ HPVEHKVLA LTILGRGNCF+SIY +SWMS+A VQA FH FC+HFA E
Sbjct: 100 LVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFARE 167
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 103 bits (258), Expect = 7.250e-25 Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 1
Query: 1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
+VK K+WF T+ DA RQ HPVEHKVLA LTILGRGNCF+SIY +SWMS+ VQ FHKFC+HFA E
Sbjct: 73 LVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFARE 140
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 102 bits (254), Expect = 4.200e-24 Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 1
Query: 1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
+VK K WF+TA DA G HPVEHKVLA LTILGRGNCF+SIY +SWMS+ VQ FHKFC HFA E
Sbjct: 60 LVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFARE 127
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5JBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL1_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 4.600e-23 Identity = 46/68 (67.65%), Postives = 52/68 (76.47%), Query Frame = 1
Query: 1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
+VK K+WF T+ DA GRQ H VEHKVLA LTILGRGNCF+SIY +SWMS VQ FHKF +HFA E
Sbjct: 132 LVKSKDWFTTSGCDAAGRQSHQVEHKVLAWLTILGRGNCFASIYQMSWMSGKTVQTMFHKFRKHFARE 199
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 2.330e-22 Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1
Query: 1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
+VK K WF A DA GR HPVEHKVLA LTILGR NCF+SI+ +SWMS+ VQ FHKFC HFA +
Sbjct: 147 LVKSKNWFLAAATDAVGRASHPVEHKVLAWLTILGRNNCFASIFQVSWMSAKTVQGMFHKFCRHFARD 214
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5KFR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 2.250e-17 Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1
Query: 1 MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSS 153
+VK K+WF T+ DA GRQ HPVEHKVLA LTILGRGNCF+SIY +SWMS+
Sbjct: 136 LVKSKDWFTTSGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSA 186
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5KGU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU8_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 2.040e-11 Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1
Query: 67 VEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFATE 204
+ H VLA LTILG GNCF+SIY +SW+S+ VQ FHKFC+HF E
Sbjct: 2 LPHDVLAWLTILGSGNCFASIYQMSWVSAKAVQTMFHKFCKHFPRE 47
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 2.240e-11 Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query: 22 FATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSSAVVQATFHKFCEHFAT 201
F TA D GRQC P+E KVL L +LGRGNCF+ + LS MS + +FH+FC+ F++
Sbjct: 94 FPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSS 153 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10318.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10318.2.1 >prot_A-nodosum_M_contig10318.2.1 ID=prot_A-nodosum_M_contig10318.2.1|Name=mRNA_A-nodosum_M_contig10318.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=68bp MVKRKEWFATAQHDACGRQCHPVEHKVLARLTILGRGNCFSSIYYLSWMSback to top mRNA from alignment at A-nodosum_M_contig10318:12695..13800- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10318.2.1 ID=mRNA_A-nodosum_M_contig10318.2.1|Name=mRNA_A-nodosum_M_contig10318.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1106bp|location=Sequence derived from alignment at A-nodosum_M_contig10318:12695..13800- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10318:12695..13800- >mRNA_A-nodosum_M_contig10318.2.1 ID=mRNA_A-nodosum_M_contig10318.2.1|Name=mRNA_A-nodosum_M_contig10318.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig10318:12695..13800- (Ascophyllum nodosum dioecious)back to top |