mRNA_A-nodosum_M_contig1029.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1029.2.1
Unique NamemRNA_A-nodosum_M_contig1029.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 1.270e-69
Identity = 142/287 (49.48%), Postives = 183/287 (63.76%), Query Frame = 1
Query:    1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGE-GTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCET-SGDDDLDSERDTGPQQDGASGGD----EDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYDVDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843
            MLIA+ CP+MRV  L+GGQ GYGGHVVN AQ+I     +LPR A ++PI+++RR+G E G H DL VRR +V  AL WL AN+P+Y DI ++   L+ LP +  L+ L  T SG D   SERD GP+ +G    D    EDTESF+ +  G  M ED  I+  LR+ +R         A            WP ME T LNEFKT GL ++ FPALFP G GDPT  ARS+ V   +G +HL++++     DGRYRFA+HPRFPHW QNMLER+R+LSQA V++K +
Sbjct:  170 MLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAADVPIIIIRREGQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTALSQLPVDGQLRGLRTTVSGGD---SERDLGPRGEGGGEEDGDTPEDTESFM-APAGKSMLEDRAIEAALRRQVRESGADVPVNA------------WPGMEATALNEFKTTGLASMAFPALFPWGKGDPTDPARSRSVKPTDGMRHLLKFF----RDGRYRFASHPRFPHWCQNMLERHRMLSQAQVYLKQN 436          
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A7D9LY68_PARCT (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LY68_PARCT)

HSP 1 Score: 216 bits (551), Expect = 4.070e-62
Identity = 120/283 (42.40%), Postives = 170/283 (60.07%), Query Frame = 1
Query:    1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843
            MLI++ CP+MRVYR  GGQRGY GHV+N  Q+I  F+N LP    +LP+++VRR G E TH+D  VRR KVF+A+ WL+ N+PF+ +I I+ D + SLP+N    +L     +++      + GP QD     +   E     V+G+G    + I +        QR+     A   +      + WP  E   +NEFKT GL T+ FP LFP G GDPT+ AR   +T  E FKHLM++ + + D    +RFA+HPRFP+WA NM +R++LLSQANV+++ H
Sbjct:  200 MLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHLDFTVRRHKVFEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDELRYVIDENEHSVHVENEGPPQDPVMSANASVEEL---VLGSG--STSFIPM-------RQRQRKEGAAIQDAVNEVDPLDWPSTEGNRVNEFKTDGLATMAFPTLFPYGKGDPTNRARQHGITLTEAFKHLMKFAEKLADGKFEWRFASHPRFPYWALNMKQRHQLLSQANVYLRQH 470          
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A7D9LNP2_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LNP2_PARCT)

HSP 1 Score: 215 bits (548), Expect = 6.780e-62
Identity = 121/283 (42.76%), Postives = 170/283 (60.07%), Query Frame = 1
Query:    1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843
            MLI++ CP+MRVYR  GGQRGY GHV+N  Q+I  F+N LP    +LP+++VRR G E TH D  VRR KV +A+ WL+ N+PF+ +I I+ D + SLP+N    +L     +++L     + GP QD     +   E     V+G+G             M + QR+   A   + S+     + WP  E   +NEFKT GL T+ FP LFP G GDPT+ AR   +T  E FKHLM++ + + D    +RFA+HPRFP+WA NM +R++LLSQANV+++ H
Sbjct:  342 MLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPHELRYVIDENELSVHVENEGPPQDPVMSANASVEEL---VLGSGSTSFI-------PMRQRQRKEGAAIQDAVSEV--DPLDWPSTEGNLINEFKTDGLATMAFPTLFPYGKGDPTNRARQHGITLTEAFKHLMKFAERLADGKFEWRFASHPRFPYWALNMKQRHQLLSQANVYLRQH 612          
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A6S7GE38_PARCT (Helitron_like_N domain-containing protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GE38_PARCT)

HSP 1 Score: 215 bits (547), Expect = 1.230e-61
Identity = 120/283 (42.40%), Postives = 169/283 (59.72%), Query Frame = 1
Query:    1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843
            MLI++ CP+MRVYR  GGQRGY GHV+N  Q+I  F+N LP    +LP+++VRR G E TH D  VRR KV +A+ WL+ N+PF+ +I I+ D + SLP+N    +L     +++L     + GP QD     +   E     V+G+G    + I +        QR+     A   +      + WP  E   +NEFKT GL T+ FP LFP G GDPT+ AR   +T  E FKHLM++ + + D    +RFA+HPRFP+WA NM +R++LLSQANV+++ H
Sbjct:  185 MLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDELRYVIDENELSVHVENEGPPQDPVMSANASVEEL---VLGSG--STSFIPM-------RQRQRKEGAAIQDAVNEVDPLDWPSTEGNLINEFKTDGLATMAFPTLFPYGKGDPTNRARQHGITLTEAFKHLMKFAERLADGKFEWRFASHPRFPYWALNMKQRHQLLSQANVYLRQH 455          
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A6S7I194_PARCT (ATP-dependent DNA helicase n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I194_PARCT)

HSP 1 Score: 217 bits (552), Expect = 2.210e-60
Identity = 121/283 (42.76%), Postives = 169/283 (59.72%), Query Frame = 1
Query:    1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843
            MLI++ CP+MRVYR  GGQRGY GHV+N  Q+I  F+N LP    +LP+++VRR G E TH D  VRR KV +A+ WL+ N+PF+ +I I+ D + SLP+N    +L     +++L     + GP QD     +   E     V+GNG    + I +        QR+     A   +      + WP  E   +NEFKT GL T+ FP LFP G GDPT+ AR   +T  E FKHLM++ + + D    +RFA+HPRFP+WA NM +R++LLSQANV+++ H
Sbjct:  339 MLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDELRYVIDENELSVHVENEGPPQDPVMSANASVEEL---VLGNG--STSFIPM-------RQRQRKEGAAIQDAVNEVDPLDWPSTEGNLINEFKTDGLATMAFPTLFPYGKGDPTNRARQHGITLTEAFKHLMKFAERLADGKFEWRFASHPRFPYWALNMKQRHQLLSQANVYLRQH 609          
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A7D9EWD8_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EWD8_PARCT)

HSP 1 Score: 216 bits (551), Expect = 2.740e-60
Identity = 120/283 (42.40%), Postives = 170/283 (60.07%), Query Frame = 1
Query:    1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843
            MLI++ CP+MRVYR  GGQRGY GHV+N  Q+I  F+N LP    +LP+++VRR G E TH+D  VRR KVF+A+ WL+ N+PF+ +I I+ D + SLP+N    +L     +++      + GP QD     +   E     V+G+G    + I +        QR+     A   +      + WP  E   +NEFKT GL T+ FP LFP G GDPT+ AR   +T  E FKHLM++ + + D    +RFA+HPRFP+WA NM +R++LLSQANV+++ H
Sbjct:  187 MLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHLDFTVRRHKVFEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDELRYVIDENEHSVHVENEGPPQDPVMSANASVEEL---VLGSG--STSFIPM-------RQRQRKEGAAIQDAVNEVDPLDWPSTEGNRVNEFKTDGLATMAFPTLFPYGKGDPTNRARQHGITLTEAFKHLMKFAEKLADGKFEWRFASHPRFPYWALNMKQRHQLLSQANVYLRQH 457          
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: UPI00106D8CF5 (uncharacterized protein LOC114518658 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D8CF5)

HSP 1 Score: 214 bits (545), Expect = 3.320e-60
Identity = 118/284 (41.55%), Postives = 173/284 (60.92%), Query Frame = 1
Query:    1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDL--DSERDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843
            MLI++ CP+M+VYR  GGQRGY GHV+N  Q+I  F+N LP    +LP+++VRR+G + TH D  VRR KVF+A+ WL+ N+PF+ DI I+ D + SLP+N   ++L     D +L   +E +  PQ+   S       +    V+GNG    + I +        QR+     A   +      + WP  E   +NEFKT GL ++ FP LFP G GDPT+  R  +V+ AE FKHLM++ + + +    +RFA+HPRFP+WA NM +R++LLSQAN++++ H
Sbjct:  279 MLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRRGADQTHKDFTVRRHKVFEAILWLKTNNPFFKDIEIDRDVIQSLPENGIPEELRYVIDDQELLVHAENEGPPQEPEMSA----NATVEELVLGNG--STSFIPM-------RQRQRKDGAAIQDAVNEVDPLDWPSTEGNAVNEFKTDGLASMAFPTLFPHGRGDPTNRVRQHEVSLAEAFKHLMKFAERLPNGKFEWRFASHPRFPYWALNMKQRHQLLSQANIYLRQH 549          
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: UPI00106CBCF8 (uncharacterized protein LOC114518711 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CBCF8)

HSP 1 Score: 211 bits (538), Expect = 1.140e-59
Identity = 116/283 (40.99%), Postives = 171/283 (60.42%), Query Frame = 1
Query:    1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843
            MLI++ CP+M+VYR  GGQRGY GHV+N  Q+I  F+N LP    +LP+++VRRQG + TH D  VRR +V +A+ WL+ N+PF+ DI I+ D + SLP+N   ++L     D++L     + GP Q+     +   E     V+GNG    + I +        QR+     A   +      + WP  E   +NEFKT GL ++ FP LFP G  DPT+  R  +V+ AE FKHLM++ + + +    +RFA+HPRFP+WA NM +R++LLSQAN++++ H
Sbjct:  359 MLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRQGADETHKDFTVRRHRVLEAILWLKTNNPFFKDIEIDRDVIQSLPENGIPKELRYVIDDNELSVHVENEGPPQEPVMSANATVEEL---VLGNG--STSFIPM-------RQRQRKDGAAIQDAVNEVDPLDWPSTEGNAVNEFKTDGLASMAFPTLFPYGRSDPTNRVRQHEVSLAEAFKHLMKFAERLPNGKFEWRFASHPRFPYWALNMKQRHQLLSQANIYLRQH 629          
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A7D9IBF1_PARCT (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IBF1_PARCT)

HSP 1 Score: 209 bits (533), Expect = 6.050e-58
Identity = 118/283 (41.70%), Postives = 167/283 (59.01%), Query Frame = 1
Query:    1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843
            MLI++ CP+MRVYR  GGQRGY GHV+N  Q+I  F+N LP    +LP+++VRR G E TH D  VRR K  +A+  L+ N+PF+ +I I+ D + SLP+N    +L     +++L     + GP QD     +   E     V+G+G    + I +        QR+     A   +      + WP  E   +NEFKT GL T+ FP LFP G GDPT+ AR   +T  E FKHLM++ + + D    +RFA+HPRFP+WA NM +R++LLSQANV+++ H
Sbjct:  187 MLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKALEAVLCLKTNNPFFKNIEIDRDGIQSLPENGIPDELRYVIDENELSVHVENEGPPQDPVMSANASVEEL---VLGSG--STSFIPM-------RQRQRKEGAAIQDAVNEVDPLDWPSTEGNLINEFKTDGLATMAFPTLFPYGKGDPTNRARQHGITLTEAFKHLMKFAESLADGKFEWRFASHPRFPYWALNMKQRHQLLSQANVYLRQH 457          
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: UPI001069E820 (uncharacterized protein LOC114526754 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069E820)

HSP 1 Score: 208 bits (529), Expect = 2.080e-57
Identity = 112/282 (39.72%), Postives = 161/282 (57.09%), Query Frame = 1
Query:    1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSERDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843
            MLI++ CP+M+VYR  GGQRGY GHV+N  Q+I  F+N LP    +LP+++VRR+G + TH D  VRR KVF+A+ WL+ N+PF+ DI I+ D + SLP+N+       T                                V+GNG    + I +        QR+     A   +      + WP  E   +NEFKT GL ++ FP LFP G GDPT+  R  +V+ AE FKHLM++ + + +    +RFA+HPRFP+WA NM +R++LLSQAN++++ H
Sbjct:  279 MLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRRGADQTHKDFTVRRHKVFEAILWLKTNNPFFKDIEIDRDVIQSLPENEPEMSANAT----------------------------VEELVLGNG--STSFIPM-------RQRQRKDGAAIQDAVNEVDPLDWPSTEGNAVNEFKTDGLASMAFPTLFPHGKGDPTNRVRQHEVSLAEAFKHLMKFAERLPNGKFEWRFASHPRFPYWALNMKQRHQLLSQANIYLRQH 523          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L976_9PHAE1.270e-6949.48ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A7D9LY68_PARCT4.070e-6242.40Helitron_like_N domain-containing protein (Fragmen... [more]
A0A7D9LNP2_PARCT6.780e-6242.76Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A6S7GE38_PARCT1.230e-6142.40Helitron_like_N domain-containing protein n=3 Tax=... [more]
A0A6S7I194_PARCT2.210e-6042.76ATP-dependent DNA helicase n=3 Tax=Paramuricea cla... [more]
A0A7D9EWD8_PARCT2.740e-6042.40ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
UPI00106D8CF53.320e-6041.55uncharacterized protein LOC114518658 n=1 Tax=Dendr... [more]
UPI00106CBCF81.140e-5940.99uncharacterized protein LOC114518711 n=1 Tax=Dendr... [more]
A0A7D9IBF1_PARCT6.050e-5841.70Helitron_like_N domain-containing protein (Fragmen... [more]
UPI001069E8202.080e-5739.72uncharacterized protein LOC114526754 n=1 Tax=Dendr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1029contigA-nodosum_M_contig1029:271559..272404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400682.PAC_15725762
PFAMsHelitron_like_N
Model size846
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.08e-36
EggNOG OGs2CC8B@1|root,2S3BW@2759|Eukaryota,3A3QP@33154|Opisthokonta,3C1YH@33208|Metazoa
Cds size846
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866393.6897724-CDS-A-nodosum_M_contig1029:271558..2724041680866393.6897724-CDS-A-nodosum_M_contig1029:271558..272404Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1029 271559..272404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1029.2.1prot_A-nodosum_M_contig1029.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1029 271559..272404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1029.2.1

>prot_A-nodosum_M_contig1029.2.1 ID=prot_A-nodosum_M_contig1029.2.1|Name=mRNA_A-nodosum_M_contig1029.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=282bp
MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIV
VVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPD
NDSLQDLCETSGDDDLDSERDTGPQQDGASGGDEDTESFLRSVVGNGMQE
DAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQ
GLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYDVDDSDGRYR
FATHPRFPHWAQNMLERYRLLSQANVFVKHH*
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mRNA from alignment at A-nodosum_M_contig1029:271559..272404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1029.2.1 ID=mRNA_A-nodosum_M_contig1029.2.1|Name=mRNA_A-nodosum_M_contig1029.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=846bp|location=Sequence derived from alignment at A-nodosum_M_contig1029:271559..272404+ (Ascophyllum nodosum dioecious)
ATGCTCATCGCCAAAGGCTGTCCTGTCATGCGTGTCTATCGCCTTGAAGG GGGGCAGCGAGGGTACGGCGGTCACGTCGTTAACTTCGCGCAGAATATCG GTGATTTCGTCAACAGCCTGCCTCGACCTGCTAGGGAGCTTCCCATAGTT GTGGTGCGGCGTCAAGGCGGGGAGGGTACTCACATAGATCTTTTGGTGCG CCGGCAGAAAGTCTTCGACGCGCTCAACTGGCTCAGGGCAAACAGCCCCT TCTACAGCGACATTAGCATCAACACGGACAACCTTAATTCGCTGCCGGAT AACGATTCCCTGCAAGACCTTTGTGAGACAAGTGGGGATGATGACCTCGA TTCTGAACGGGATACTGGACCTCAACAGGACGGTGCGTCTGGAGGGGACG AAGATACTGAGTCTTTCCTTAGATCGGTCGTCGGGAACGGTATGCAGGAG GATGCTATTATCGATCTGCTCCTGCGAAAAATGCTTCGGGCTCAGCGCCG CAGCACTGTCGCAGGCGCTGGCTCCCGGTCACAGACAACAGCCTCTGCCA TCCCTTGGCCAAAAATGGAGGACACGCCCCTCAACGAGTTCAAGACACAG GGGCTATGTACGTTGTGTTTCCCTGCTCTATTCCCGTGCGGTTGTGGAGA CCCCACGCATGTCGCAAGAAGTAAAAAAGTCACCAATGCCGAGGGGTTCA AGCATCTAATGCGTTATTACGACGTAGATGACAGTGACGGGCGATACCGG TTCGCCACACATCCTAGGTTCCCGCACTGGGCGCAGAATATGCTTGAAAG ATACCGTCTACTCTCTCAGGCTAACGTTTTCGTCAAACATCACTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1029:271559..272404+

>mRNA_A-nodosum_M_contig1029.2.1 ID=mRNA_A-nodosum_M_contig1029.2.1|Name=mRNA_A-nodosum_M_contig1029.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at A-nodosum_M_contig1029:271559..272404+ (Ascophyllum nodosum dioecious)
ATGCTCATCGCCAAAGGCTGTCCTGTCATGCGTGTCTATCGCCTTGAAGG
GGGGCAGCGAGGGTACGGCGGTCACGTCGTTAACTTCGCGCAGAATATCG
GTGATTTCGTCAACAGCCTGCCTCGACCTGCTAGGGAGCTTCCCATAGTT
GTGGTGCGGCGTCAAGGCGGGGAGGGTACTCACATAGATCTTTTGGTGCG
CCGGCAGAAAGTCTTCGACGCGCTCAACTGGCTCAGGGCAAACAGCCCCT
TCTACAGCGACATTAGCATCAACACGGACAACCTTAATTCGCTGCCGGAT
AACGATTCCCTGCAAGACCTTTGTGAGACAAGTGGGGATGATGACCTCGA
TTCTGAACGGGATACTGGACCTCAACAGGACGGTGCGTCTGGAGGGGACG
AAGATACTGAGTCTTTCCTTAGATCGGTCGTCGGGAACGGTATGCAGGAG
GATGCTATTATCGATCTGCTCCTGCGAAAAATGCTTCGGGCTCAGCGCCG
CAGCACTGTCGCAGGCGCTGGCTCCCGGTCACAGACAACAGCCTCTGCCA
TCCCTTGGCCAAAAATGGAGGACACGCCCCTCAACGAGTTCAAGACACAG
GGGCTATGTACGTTGTGTTTCCCTGCTCTATTCCCGTGCGGTTGTGGAGA
CCCCACGCATGTCGCAAGAAGTAAAAAAGTCACCAATGCCGAGGGGTTCA
AGCATCTAATGCGTTATTACGACGTAGATGACAGTGACGGGCGATACCGG
TTCGCCACACATCCTAGGTTCCCGCACTGGGCGCAGAATATGCTTGAAAG
ATACCGTCTACTCTCTCAGGCTAACGTTTTCGTCAAACATCACTAA
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