mRNA_A-nodosum_M_contig10278.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10278.8.1
Unique NamemRNA_A-nodosum_M_contig10278.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10278.8.1 vs. uniprot
Match: A0A6H5L3Y4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y4_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.210e-52
Identity = 89/114 (78.07%), Postives = 101/114 (88.60%), Query Frame = 1
Query:    1 IDRVFLLARSFNFRVPPYFISNVRALGELEGLAMTADPGFNMISVVYPYVCRRLLSDPSPPLRATLTEFVTTGNGSVRWEVLETLMRDSNVLDERLPSGGETRTQPLDLSLQFL 342
            IDRVFLLARSFNFRVPPYFISNVRALGELEGLAMTADPGFN+ISVVYPYVCRRLL+DPSPPLRA L + +   +GSV+W+VLE LM DSN LD+R+ +GGETR  PLDLS+ F+
Sbjct:  667 IDRVFLLARSFNFRVPPYFISNVRALGELEGLAMTADPGFNLISVVYPYVCRRLLTDPSPPLRAALKDLIVADDGSVQWDVLEVLMSDSNFLDQRVGAGGETRRPPLDLSVDFI 780          
BLAST of mRNA_A-nodosum_M_contig10278.8.1 vs. uniprot
Match: D7FNM7_ECTSI (ABC1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM7_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 3.340e-51
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 1
Query:    1 IDRVFLLARSFNFRVPPYFISNVRALGELEGLAMTADPGFNMISVVYPYVCRRLLSDPSPPLRATLTEFVTTGNGSVRWEVLETLMRDSNVLDERLPSGGET 306
            IDRVFLLARSFNFRVPPYFISNVRALGELEGLAMTADPGFN+ISVVYPYVCRRLL+DPSPPLRA L + +   +GSV+W+VLE LM DSN LD+R+ +GGET
Sbjct:  121 IDRVFLLARSFNFRVPPYFISNVRALGELEGLAMTADPGFNLISVVYPYVCRRLLTDPSPPLRAALKDLIVADDGSVQWDVLEVLMSDSNFLDQRVGAGGET 222          
BLAST of mRNA_A-nodosum_M_contig10278.8.1 vs. uniprot
Match: A0A835YQ71_9STRA (ABC1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ71_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.220e-30
Identity = 57/88 (64.77%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    1 IDRVFLLARSFNFRVPPYFISNVRALGELEGLAMTADPGFNMISVVYPYVCRRLLSDPSPPLRATLTEFVTTGNGSVRWEVLETLMRD 264
            +DR+F LA+ FNF VPPYF+SN+RALGELEGLAMTAD  FN++  VYPYV RRLL+DPSP LR  L EFV   +G  RW+V++TL+ D
Sbjct:  438 VDRLFSLAQEFNFVVPPYFLSNLRALGELEGLAMTADASFNLVGAVYPYVARRLLTDPSPRLRRALQEFVIDDSGLPRWDVIDTLLHD 525          
BLAST of mRNA_A-nodosum_M_contig10278.8.1 vs. uniprot
Match: A0A6T6CQ29_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6CQ29_9RHOD)

HSP 1 Score: 89.0 bits (219), Expect = 2.720e-18
Identity = 46/108 (42.59%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   19 LARSFNFRVPPYFISNVRALGELEGLAMTADPGFNMISVVYPYVCRRLLSDPSPPLRATLTEFVTTGNGSVRWEVLETLMRDSNVLDERLPSGGETRTQPLDLSLQFL 342
            LA  F   +PPYF++N+RAL  +EGLA+ ADP F+M  VVY YV  R L D SP L + +   + + +G++RW  LETL+RD+ +   R     +    P DL + FL
Sbjct:  401 LASRFPLVLPPYFLNNIRALATMEGLALMADPSFSMWGVVYQYVVTRALFDRSPALTSAVGRLIVSRDGTIRWNRLETLLRDAAMSINR---SSQINVVPKDLLVDFL 505          
BLAST of mRNA_A-nodosum_M_contig10278.8.1 vs. uniprot
Match: A0A7S2ZE39_9RHOD (Hypothetical protein n=8 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZE39_9RHOD)

HSP 1 Score: 87.4 bits (215), Expect = 9.650e-18
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    4 DRVFLLARSFNFRVPPYFISNVRALGELEGLAMTADPGFNMISVVYPYVCRRLLSDPSPPLRATLTEFVTTGNGSVRWEVLETLMRDSN 270
            +++  LA  F   +P YF+SN+RAL  LEGLA+TADP F +  ++YPYV  R+L   +P L+A LTE V    GS+RW  L  ++ D++
Sbjct:  561 EKLLSLANQFPLVLPSYFVSNMRALATLEGLALTADPDFRIFRLIYPYVVNRVLYSENPTLKAALTEMVVDREGSIRWNRLTDMVNDAD 649          
BLAST of mRNA_A-nodosum_M_contig10278.8.1 vs. uniprot
Match: A0A7J7IQA4_9RHOD (Protein kinase domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IQA4_9RHOD)

HSP 1 Score: 87.4 bits (215), Expect = 9.720e-18
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   31 FNFRVPPYFISNVRALGELEGLAMTADPGFNMISVVYPYVCRRLLSDPSPPLRATLTEFVTTGNGSVRWEVLETLMRDS 267
            F F +P YF++N+RAL  LEGLA+ ADP F ++ ++YPYV RRLL+DPSP L+  L E V T  G  RW+ +E L+ D+
Sbjct:  581 FPFVMPLYFLNNLRALAMLEGLALNADPSFRIMDILYPYVVRRLLTDPSPQLQRALQELVLTPFGEPRWDRVEKLLDDA 659          
BLAST of mRNA_A-nodosum_M_contig10278.8.1 vs. uniprot
Match: K9VY76_9CYAN (ABC-1 domain-containing protein n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9VY76_9CYAN)

HSP 1 Score: 86.3 bits (212), Expect = 2.390e-17
Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    4 DRVFLLARSFNFRVPPYFISNVRALGELEGLAMTADPGFNMISVVYPYVCRRLLSDPSPPLRATLTEFVTTGNGSVRWEVLETLMRDSNVLDERLPSGGETRTQPLDLSLQFL 342
            D++  L   + FRVP Y+   +R+L  LEG+A+  DP F ++S  YPYV RRLL+DPSP LRA+L + +   NGS RW  LE L+++++  D      G    Q L+ +L+FL
Sbjct:  439 DQLSALMYEYPFRVPAYYALIIRSLVTLEGIAINIDPNFKVLSKAYPYVARRLLTDPSPDLRASLQDLLFK-NGSFRWNRLENLLKNASNSD------GFDINQVLNQTLEFL 544          
BLAST of mRNA_A-nodosum_M_contig10278.8.1 vs. uniprot
Match: UPI001685FCA3 (AarF/ABC1/UbiB kinase family protein n=5 Tax=Coleofasciculus TaxID=669368 RepID=UPI001685FCA3)

HSP 1 Score: 83.2 bits (204), Expect = 2.880e-16
Identity = 46/113 (40.71%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    4 DRVFLLARSFNFRVPPYFISNVRALGELEGLAMTADPGFNMISVVYPYVCRRLLSDPSPPLRATLTEFVTTGNGSVRWEVLETLMRDSNVLDERLPSGGETRTQPLDLSLQFL 342
            D +  L   + FRVP Y+   +R+L  LEG+A+  DP F ++S  YPYV +RLL+DPSP LRA+L + +   +GS RW  LE L++++   D+         TQ L+ +L FL
Sbjct:  448 DDMSALMYEYPFRVPAYYALIIRSLVTLEGIAINVDPNFKVLSKAYPYVAKRLLTDPSPELRASLRDLLFK-DGSFRWNRLENLLKNARFSDDY------DLTQVLNQTLDFL 553          
BLAST of mRNA_A-nodosum_M_contig10278.8.1 vs. uniprot
Match: A0A2V3IYP6_9FLOR (Protein kinase domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYP6_9FLOR)

HSP 1 Score: 83.2 bits (204), Expect = 2.950e-16
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 IDRVFLLARSFNFRVPPYFISNVRALGELEGLAMTADPGFNMISVVYPYVCRRLLSDPSPPLRATLTEFVTTGNGSVRWEVLETLMRD 264
            + ++  L   F F    YF++N+R LG LEGLA++A+P F+++ VVYPYV RR+LSDPSP  R  L   V    G +RW  +  L++D
Sbjct:  597 VGKLLTLGNRFPFVFNDYFLNNLRCLGMLEGLALSANPNFSILGVVYPYVVRRILSDPSPRFRRALGSLVIDSYGRMRWSRMGQLLQD 684          
BLAST of mRNA_A-nodosum_M_contig10278.8.1 vs. uniprot
Match: A0A3S0ZKI8_CHLFR (Protein kinase domain-containing protein n=2 Tax=Chlorogloeopsis fritschii TaxID=1124 RepID=A0A3S0ZKI8_CHLFR)

HSP 1 Score: 82.8 bits (203), Expect = 3.920e-16
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    4 DRVFLLARSFNFRVPPYFISNVRALGELEGLAMTADPGFNMISVVYPYVCRRLLSDPSPPLRATLTEFVTTGNGSVRWEVLETLMRDS 267
            D +  L   + FRVPPY+   +R+L  LEG+A+  DP F ++S  YPYV +RLL+DPSP LRA+L + +    GS RW  LE L+R++
Sbjct:  430 DELSALMYEYPFRVPPYYALIIRSLVTLEGIAIYIDPNFKVLSEAYPYVAKRLLTDPSPELRASLRDLLFK-EGSFRWNRLENLLRNA 516          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10278.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3Y4_9PHAE1.210e-5278.07Integrase catalytic domain-containing protein n=1 ... [more]
D7FNM7_ECTSI3.340e-5180.39ABC1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YQ71_9STRA1.220e-3064.77ABC1 family-domain-containing protein n=1 Tax=Trib... [more]
A0A6T6CQ29_9RHOD2.720e-1842.59Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S2ZE39_9RHOD9.650e-1844.94Hypothetical protein n=8 Tax=Rhodosorus marinus Ta... [more]
A0A7J7IQA4_9RHOD9.720e-1851.90Protein kinase domain-containing protein n=1 Tax=C... [more]
K9VY76_9CYAN2.390e-1742.48ABC-1 domain-containing protein n=1 Tax=Crinalium ... [more]
UPI001685FCA32.880e-1640.71AarF/ABC1/UbiB kinase family protein n=5 Tax=Coleo... [more]
A0A2V3IYP6_9FLOR2.950e-1644.32Protein kinase domain-containing protein n=1 Tax=G... [more]
A0A3S0ZKI8_CHLFR3.920e-1646.59Protein kinase domain-containing protein n=2 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10278contigA-nodosum_M_contig10278:12508..14079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNM7
PFAMsABC1,APH,DCP2,NUDIX
Model size342
Max annot lvl2759|Eukaryota
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.48e-52
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Descriptionregulation of tocopherol cyclase activity
Cds size342
COG categoryE
BRITEko00000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866392.762006-CDS-A-nodosum_M_contig10278:12507..125861680866392.762006-CDS-A-nodosum_M_contig10278:12507..12586Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10278 12508..12586 +
1680866392.8180933-CDS-A-nodosum_M_contig10278:13103..132601680866392.8180933-CDS-A-nodosum_M_contig10278:13103..13260Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10278 13104..13260 +
1680866392.8282588-CDS-A-nodosum_M_contig10278:13537..136091680866392.8282588-CDS-A-nodosum_M_contig10278:13537..13609Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10278 13538..13609 +
1680866392.8407884-CDS-A-nodosum_M_contig10278:14045..140791680866392.8407884-CDS-A-nodosum_M_contig10278:14045..14079Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10278 14046..14079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10278.8.1prot_A-nodosum_M_contig10278.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10278 12508..14079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10278.8.1

>prot_A-nodosum_M_contig10278.8.1 ID=prot_A-nodosum_M_contig10278.8.1|Name=mRNA_A-nodosum_M_contig10278.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=114bp
IDRVFLLARSFNFRVPPYFISNVRALGELEGLAMTADPGFNMISVVYPYV
CRRLLSDPSPPLRATLTEFVTTGNGSVRWEVLETLMRDSNVLDERLPSGG
ETRTQPLDLSLQFL
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mRNA from alignment at A-nodosum_M_contig10278:12508..14079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10278.8.1 ID=mRNA_A-nodosum_M_contig10278.8.1|Name=mRNA_A-nodosum_M_contig10278.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1572bp|location=Sequence derived from alignment at A-nodosum_M_contig10278:12508..14079+ (Ascophyllum nodosum dioecious)
ATCGACCGCGTCTTCCTCCTGGCGAGATCCTTCAACTTTCGGGTGCCTCC GTACTTCATCAGCAATGTCAGAGCCTTGGGTGCGTGCGTTCGTGTCTTTT GTCTGCCATGAATCCTTGACTTTTGGTTGATACTGCTGTTATTGATACAT TATTACGATGTTATCTATAATGTTACCGCTTTTAAGCCGATTGGTCGGAT CCCGTGCCCCGCTTGTACTTCGCCGAAATGGGGCGGGAAATGAAGGAATA ACAACCCTTCTCTTAAAAAGAAGGAAAATAACAGAAAATTCCCAGCAATG TACTACAAATGGCGTCAATATCTTGAAAAGTTTGCTCGTATACTCTTGGG AGTTGGCGGGTGTCGGTAGAAACACGGTACGACAATCGATCGAGCGTTTG AGTGTATCATAATTTGACCGAGCAATCTGAGCGCGTCACCACCGAACGAG AACCACGCAATTCTTTTTGAGCTTTGCGCGCCGGTTTCGCAACCCTCCTC TCTTCGCGATCTGGCCTAGTCATGAATGATTCCCCACCATCTCTATCCTA ACCGGCTACGCCCTTCTTGTGGCCGAACGACGCCTTTCATCAACAGGGGA GCTGGAGGGACTCGCAATGACGGCGGATCCTGGCTTCAACATGATATCGG TAGTTTACCCGTACGTGTGTCGCAGGCTCCTGTCCGATCCGAGTCCCCCT CTACGGGCGACGCTGACGGAGTTCGTCACGACGGGGAACGGGTCCGTTCG CTGGTGAGGCGTTTTTTAGGTATGACTATGCGCTCCTCTTTCGGTTGTCG CACGGAGAGCTTTGATCGAGGGGAAGAAACGTATTTCGCATGCGCGTTTC CTTTTGGATTCGCGGGGGGGGGGGCTATGGCCTTTTACGATGAGCCCTAC CTGGTACACCCTTACTCGATGTGAACGAAGTTGTCTCCCACTTCTTGTAA AGGAAACAATGCAATCGTTCCTCTTTGCTAGTTTTTGAAGGAGTCTCCTC GTGCGTCCGGTCACCCTTCTCTCTCGACAGGGAGGTCTTGGAGACGCTCA TGAGGGACTCCAACGTGCTCGACGAGCGGTTGCCATCCGGAGGCGAAACG AGGTGTAGATCATTTCGTAGTCCGTACGCGGTGATCATTACTAATTAATG TAAAAATATATAGTAATTCCCGGGATCTTTCTCTCGAACTTGTGTGGTGT AGAAGTTCGACACTCGACTTGTTGGTCGTTATCTGCTGGTGTGTTCCTTG AGAATCACTTCGTGTTACGCATGGCGAGCACGGCACGAACGGAGTTACGG AGTTCACCCTCGTGGAGCTATAGCTATATCTATCGCTATCCGATGATGCC TACCCCCCACGTTGGCCTTTTTTTTATATATAAAATATTCAGGCCACGCT CTCGTTTAGCACGCACGCTATGCCCAGTCATTGAACGCCATGCCCAGTCA TTGAACGCCATGCCCGGTCATTGATTATCATCCCACACATGCTGAGCCGT GCTTTGCTCACACACGCACGCACGTATTTCTCGCCCAGGACGCAACCCCT GGACTTGTCTCTGCAGTTCCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10278:12508..14079+

>mRNA_A-nodosum_M_contig10278.8.1 ID=mRNA_A-nodosum_M_contig10278.8.1|Name=mRNA_A-nodosum_M_contig10278.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at A-nodosum_M_contig10278:12508..14079+ (Ascophyllum nodosum dioecious)
ATCGACCGCGTCTTCCTCCTGGCGAGATCCTTCAACTTTCGGGTGCCTCC
GTACTTCATCAGCAATGTCAGAGCCTTGGGGGAGCTGGAGGGACTCGCAA
TGACGGCGGATCCTGGCTTCAACATGATATCGGTAGTTTACCCGTACGTG
TGTCGCAGGCTCCTGTCCGATCCGAGTCCCCCTCTACGGGCGACGCTGAC
GGAGTTCGTCACGACGGGGAACGGGTCCGTTCGCTGGGAGGTCTTGGAGA
CGCTCATGAGGGACTCCAACGTGCTCGACGAGCGGTTGCCATCCGGAGGC
GAAACGAGGACGCAACCCCTGGACTTGTCTCTGCAGTTCCTC
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