mRNA_A-nodosum_M_contig1022.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1022.2.1
Unique NamemRNA_A-nodosum_M_contig1022.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1022.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1022contigA-nodosum_M_contig1022:19368..20107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size741
Hectar predicted targeting categoryother localisation
Exons1
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866387.713448-UTR-A-nodosum_M_contig1022:19367..194951680866387.713448-UTR-A-nodosum_M_contig1022:19367..19495Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1022 19368..19495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866387.7885644-CDS-A-nodosum_M_contig1022:19495..201071680866387.7885644-CDS-A-nodosum_M_contig1022:19495..20107Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 19496..20107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1022.2.1prot_A-nodosum_M_contig1022.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1022 19496..20107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1022.2.1

>prot_A-nodosum_M_contig1022.2.1 ID=prot_A-nodosum_M_contig1022.2.1|Name=mRNA_A-nodosum_M_contig1022.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=204bp
RRPSSLRGRGRGRRGRRHLAGGVSRAKAFSEHREGQRSWSRRRKGGGRGV
GYRDSKVGSFRGVGRNVLDGSGDDAGDGYPRSPFLTTTSGGPTTWRSPLE
QSAVNPFSASFGNVESSPSPGGRLQARGRVLGGKEKVVEGGREGASAQRL
VGRVSGGYGSQWEGGGSLGLGADKRASSKRRRSSGHTVDDQGQLMRGTIY
PRH*
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mRNA from alignment at A-nodosum_M_contig1022:19368..20107-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1022.2.1 ID=mRNA_A-nodosum_M_contig1022.2.1|Name=mRNA_A-nodosum_M_contig1022.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=740bp|location=Sequence derived from alignment at A-nodosum_M_contig1022:19368..20107- (Ascophyllum nodosum dioecious)
CGACGACCGAGCTCCCTCCGAGGCCGGGGTCGAGGAAGACGCGGCAGGCG
CCATCTCGCCGGCGGCGTCTCCCGTGCGAAAGCTTTCTCGGAGCATCGGG
AGGGACAACGTTCTTGGAGCCGCCGCAGGAAGGGAGGGGGGCGCGGGGTG
GGTTACAGGGACTCGAAAGTCGGTAGCTTTCGCGGGGTGGGGAGAAATGT
GTTGGACGGTTCCGGCGATGACGCCGGCGACGGTTACCCCCGATCCCCCT
TCTTGACAACTACGAGCGGAGGTCCGACGACGTGGAGGTCTCCCTTGGAG
CAGAGCGCGGTCAACCCGTTCTCTGCATCCTTCGGCAATGTTGAGAGTTC
TCCCTCGCCAGGAGGGCGTTTGCAGGCGCGGGGCCGAGTTCTTGGGGGAA
AGGAGAAGGTTGTCGAGGGAGGCCGGGAGGGGGCATCCGCGCAGCGCCTG
GTGGGTCGTGTCAGCGGCGGGTACGGATCTCAATGGGAAGGTGGCGGATC
GTTGGGATTGGGGGCGGACAAGAGGGCGTCTTCAAAGAGGCGGAGGTCTT
CCGGACACACAGTTGACGACCAAGGTCAGTTAATGCGCGGGACAATTTAT
CCTCGTCACTAGTGTGTTTGTGTGTGTATACTATTAATAGTGTATAGTGC
ATACCTCGTAGTTTACTGGTAATATGTGGCCGCTGACTGATACTTTATTT
TGCAAGTGAGTCTTTCTGCCATGCGAGCGCTCTAGTGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1022:19368..20107-

>mRNA_A-nodosum_M_contig1022.2.1 ID=mRNA_A-nodosum_M_contig1022.2.1|Name=mRNA_A-nodosum_M_contig1022.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at A-nodosum_M_contig1022:19368..20107- (Ascophyllum nodosum dioecious)
CGACGACCGAGCTCCCTCCGAGGCCGGGGTCGAGGAAGACGCGGCAGGCG
CCATCTCGCCGGCGGCGTCTCCCGTGCGAAAGCTTTCTCGGAGCATCGGG
AGGGACAACGTTCTTGGAGCCGCCGCAGGAAGGGAGGGGGGCGCGGGGTG
GGTTACAGGGACTCGAAAGTCGGTAGCTTTCGCGGGGTGGGGAGAAATGT
GTTGGACGGTTCCGGCGATGACGCCGGCGACGGTTACCCCCGATCCCCCT
TCTTGACAACTACGAGCGGAGGTCCGACGACGTGGAGGTCTCCCTTGGAG
CAGAGCGCGGTCAACCCGTTCTCTGCATCCTTCGGCAATGTTGAGAGTTC
TCCCTCGCCAGGAGGGCGTTTGCAGGCGCGGGGCCGAGTTCTTGGGGGAA
AGGAGAAGGTTGTCGAGGGAGGCCGGGAGGGGGCATCCGCGCAGCGCCTG
GTGGGTCGTGTCAGCGGCGGGTACGGATCTCAATGGGAAGGTGGCGGATC
GTTGGGATTGGGGGCGGACAAGAGGGCGTCTTCAAAGAGGCGGAGGTCTT
CCGGACACACAGTTGACGACCAAGGTCAGTTAATGCGCGGGACAATTTAT
CCTCGTCACTAG
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