mRNA_A-nodosum_M_contig102.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig102.13.1
Unique NamemRNA_A-nodosum_M_contig102.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig102contigA-nodosum_M_contig102:127576..134860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size248
Hectar predicted targeting categoryother localisation
Exons3
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866379.8861806-CDS-A-nodosum_M_contig102:127575..1276521680866379.8861806-CDS-A-nodosum_M_contig102:127575..127652Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 127576..127652 -
1680866379.896561-CDS-A-nodosum_M_contig102:128472..1285631680866379.896561-CDS-A-nodosum_M_contig102:128472..128563Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 128473..128563 -
1680866379.90907-CDS-A-nodosum_M_contig102:134782..1348031680866379.90907-CDS-A-nodosum_M_contig102:134782..134803Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 134783..134803 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866379.918991-UTR-A-nodosum_M_contig102:134803..1348601680866379.918991-UTR-A-nodosum_M_contig102:134803..134860Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig102 134804..134860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig102.13.1prot_A-nodosum_M_contig102.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig102 127576..134803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig102.13.1

>prot_A-nodosum_M_contig102.13.1 ID=prot_A-nodosum_M_contig102.13.1|Name=mRNA_A-nodosum_M_contig102.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
MIISFPKVDRARRVHGRPGVRLVVHILVHLEQMLRDHGVFPNSSIGKARR
DINVTSGLISPDQ
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mRNA from alignment at A-nodosum_M_contig102:127576..134860-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig102.13.1 ID=mRNA_A-nodosum_M_contig102.13.1|Name=mRNA_A-nodosum_M_contig102.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7285bp|location=Sequence derived from alignment at A-nodosum_M_contig102:127576..134860- (Ascophyllum nodosum dioecious)
CAAAGGCAAAGACAGTAGCGCTTGTTCATCTGCTAAGATAGAAGGTTGAT
TTGGATCATGATTATTTCCTTTCCCAAGGTGAACCAAGTCTGGGGAATGC
TTTGTGTGTGTGTGTGTCCGGTCGACCCCGGTAGCTCAGTTGGCACCTCG
TAACCTTCTGACACGTTGGGACGTGAGTTCGATCCCGGCAAACGGGATTT
TTCTCACTAAAAACTAAAAAACCAAAATAAAAATGCCCAACGAGTGGAGA
ACGATTAATTCGTTAGTACACAAAATTCGACTTCACGGTCGACGAGGGAA
AGGAATGGCTGAATCCTTCTCGCGACAAAAAGCAAGGCACGCACCGCAGA
AGGAAGGTGGATTAAAAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGG
CTGGTACGTCCAACGAACTTGATGTCCAGAATGAATGGGAAGAAAACACA
CACACACACAATAGTCGCAGTAAGCTGGGAATCGGAGAGATGGCAAGAGA
GAGCGGATCTTGGAAAATATCGTGGAGGACGAGTCGGGGGAAGAAGATGC
CGAGGGGGAATCGTCTGCATCTTTCAAGTCGGAGGATGATGAGGTGGGAT
TATCGGCGAACCGTATCGATAAGGTTGCACGGAGTTGGTGACGGAAGTCT
TGAGAAGCAGGCCGCCACTACCTCATGTAAACTGTTGTACAGCACGAAGC
CATCCTCCGAGGGAACGGCGGGTTGAAGAGATGCCAATGGCACCGTAGAT
GAAAGTTCTGTTGCGTGCCTTGAAAAGTAGTGTGTCATGAGGTGAATCAA
GATTGCCTACAGGGTATGTTCTCTACAACTTTATTTTAAAAGATCTGACC
CTTAGTAGAAGTATTGTACCCTGTACAGTATACATGTATGTATGGTCATC
ACATATAGCAGAGTATGGATCAACCGGGTAAGGTAATTAGGCCGGTCGCC
CCGGTAGCTCAGAGGTACCTCGTAACCCTATGACACGTTGGGACGTGAGT
TCGATCCCGGCAAACGGGATTTTTCTCACTAAAAAAACTACCTGGTAAGA
AACAAAATAAAAATGCCCAACGGGTGGAGAACGATTAAATCGTTAGTACA
CAAAATTCTACTTCACAATCGACGAGGGAAAGGAATGGCTGAATCCTTCT
CGAGATAAAAATTAAGGCACGCACCGCAGAAAGAAGGTGGATGAGACATC
CTGTGTGACCTTCCTGTGTGACCCCGGCTGGTACGTCCAACGAACTTGAT
GTCCAGAATGAATGGGAAGAAAACACACACACACACACACACAAGGTTGC
CAATCCTGCTCGTGGTCAGCTGAACAGGGAAAAGGAATATTCCCCTGTCC
CCGTGCGTGCCTGAGAATTTGGTCTCGCGAGACGGGTTCAGCCGTCCCGA
TCCGCGTCAGCCTGTTCATCTCCATACTCAGGCTGAATCTGGTGCTTACT
TACGGGATTCCTCCCGAGCTCCGCGGCGGCGTCCATTTATAAAACCGCCA
TACGCCATCGGGTCAGTCCTGACTTTATCGTGTCACGCAATTGCGTATCG
ATGGCGTTCACTGCCGAGAGTCCGCCGGCACAGGGCCAGTAAACCTCAAA
GTAGTTCCGAACGAGTGCTGCCTTGGCAGGTCACCATGGACCAATTAATA
TTCGCCTCTCTTTCCCACACCCACTATTGGTATGAAGTGGGCATGTTGAA
AGTACCGGCGGCGAGTATGGATCAACCGGGTAAGGTTGCCAGTCCTGCTC
GTGGTCAGCTGAACAGGGGAAATGAATATTCCCCCGTCCCCGTGCGTGCC
TAAGAATTTGGTCTCGCGAGACGGGTTCAGCCGTCCCGTCCCGCGGCATC
CTGCTGATCTCCATACTCAGGCTGAATCTGGTGCTTGCTTACGGGATTCC
TCCCGAGTTCCGCGGCGGCGTCCATTTACTATTTAAACCACCATACGCCA
TCGGGTCAGTCCCGAGTTTATCGGGTCACGCGATTGCGTACCGATGGCGT
TCACTGCCGAGAGTCCGCCGGCACATGGCCAGTAAACCTCAAGGTAGTTC
CGAACGAGTGCTGCCTTGGCAGGTCACACATGGACCAATTAATATTCGCC
TCTCTTTCCCACACCCACTATTGGTATAAAATGGGCATGTTGAAAGTACC
GGCGGACAGTATGTACCAACCAGTAGAGTGTTTACGAAACCCATATTTCT
ATTTTTATGAAGAAAAGTCTGAACGCATCTAAGACCATGTCTTATGGGAC
CGAAATCCAGGATTCTTGAAATCTGAAATCGAGCCATTTTCGGATTTCAA
GAAAGTCCATCTTATGGATTTTCTTGAAATCGGCCCATTCTCTTGAATCT
GATTTTCAAGAATCGGGCGAGGTCGGCAGATTCTTGAAAATGGGCACCCA
TTTTCAAGAGAGATCGGGCTCTCTTGAAAACGGTCTTTGTGTTACATGGT
CAGGCTTTTGGCTATACAGTTCCCAGGGTATTTGTGGCTTTTGATAACTT
GTTGCAGTGGAGCAAATGTATGACCAGATCACACGCCGACTCGTAGCATA
GAGAGTAGCGCCAGCAGCCCGAGTAATTCTGAGTCAAACTCAAGCTTTCG
ACGATGGAGGTTATTGATGGAAACGATGTCGTACTGGCAGCAAGTATCGC
TGTCGCTGCCACGATACAGTTGTTTGTTTGTACTCCAGAGACCTCGCACG
TTGGTACCAACAGGGCCCACATAGTTCTAAAACCCTCTCCTCAAGAAAAT
GCACACCTAACGATATACCAAGGCGCGCCGGGCCGCGAGAAGAGATCCAA
TGAGTAGACTTTACGTAGGTCTGCCTCCAACTAAACTGCTGCTGCGACTC
ATAGAGCGGCTACTCGCACAACAGATTTTTCCCGTCGAGACCACGTTTCC
CAGTCAAGCACTTGGAGTTGTTCAATTATAAAACGTACCGGAGTCGCACG
TACCTAACTGCACTTTCAAGTACAAGTATATAGTAGTTTTTTTTCTGTGC
TGTGTGGAAGAGATCAGAAAAAGAGAAGCAGCAACGAGTCGATACACGCC
GACGCGTAGCACAGAAACTAGGGCCAACAGCTCGAGGGAGGAGGTTACAT
ACGGAAACGATGGGGCGCTGGCAGCGGGAATCGCTCTCGCTGCATGCAGA
CATTTGTTTGTACTCACGAGACCTCGCACGTTGGTACCAACATGGCCCAT
AGAGTTCTAAATAGCTCCACTCAAGAAAATGTACACCTTATCATACCAAG
GCCCGCCGGGCGGCGGGAAGAGATTGAATTAGTAGGCTTGACGTGGGTCT
GCCTCCAACTAAACTGCTGCTGCGACTCACAAAGCAATTACACGTACAAC
ATGTGGTTTTCGTCGAGGCCACGTTCCCCAGTAAAGCACTCGGTGCTGTG
CAAGTATAACACGTATTACGCAATTAAGCAGCTTGGTGCAACCTCCCGGT
TTGCTTGTTCAAAAAACGGCATTCATCCCTTTTCCTGCCAAAGGGAGGGT
AAAAGATTGGATACGGTTGTTGGTCGTTAAAGTTTAAGTTTTTTGGCACT
CTTTTCAACAATACGTATGTATGTTGTTTGTATCTCAAAATATTCCGTTT
CGACGCTACGGTAAAATTTAAATGCCATGAAGAGGTTTTGTATTTGCAGC
CTATGATCCCACCTAAACGTGTTGACACTTTTTTCCCCTGACTGGGGGAT
GCTCAGAAGGTCTATAGGTGCGCTCTGATTTTTCTTTCAAAAATGTTTTC
GCAAATTCATTTGTTTAAAGAAAAATCTGAGCGCATTTAAACCTTCCAAT
TAGTCAAAAGGTTTAGGTGGAAACAGTGACTGTTTAAATTATTTATGAGA
TGTGAACAGACTCATCACAAACGAACAGCCCAAACATGTTCCCGTGCGAG
GGTCAGACATGTGAGTTTAATTGACCGCCTTCGATGTTAGCTATTAATAT
TATTACAATAGCAGTAGGGGACAGGCTTACATTTCTCGAATTTGCCATAG
TCTATCATCGCTCCAAAGATACAATTGGTTATTACAAGAACAACATTCCT
TGCCTTCCCAGTCAACACAAAGGCTAAAAAGGAAGACACCCAATGTCCTA
AGCCTTGTACCCGCATGGTTGATACTACTTACGCACGAAGTGAAATTTTC
ACCTCAAACCGAACGATCGAACGATCGAACGCTCGAACCCTCGGCGGTAG
AGTAGCCCGAGGAGTCTCGTTTTGTGATCGCTGCCGCTTTGCCCACTTCG
TTAGTTAGCTGCTGTAGTATAACAGTAGCCATCCCCCCAACAAGGAGTAC
ATTTCTGCACATCTCCCCCACCCTCCGAGCTGACGCAACTTCAGGCGCTC
TGCGGCACCGAGCATCGAACATTTGTACCGCCGATCAACTTGAACCGTCC
GGATGTTGTGTCTCTCAAGAAGGGACGATCGGTCATACGTAGTTGCAAAA
CAAAAATCGCTCTTGTCTGGCTCCCGGAGTGCAGCACCCAGCAAGGTCAC
AAATTATTATAGTAATTTTAAAGTTCGGGGTCCTTGGCCAACCACATCGA
TGTATCTTGTGCGTCTGGTTCGCACTCATACTTATGACTTTCTATTTATG
GCTTTTTTTGTTGGGCAAAATCCCATGTCATATTATAGTACCGATCATAT
TAATGACTTCGGGAGAAATATTGGTCATAATTGAGCTATGCTGTATGACA
GCGCACCTAAAAGCCGTCACGAATGACTGGGCGACGGAGCGAGGACTCTT
CTCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTG
ATCTCTCTCACCCTTGGCCTCCTCCACGTCGGGTGTGATGCGCTCCACGC
CGTGCAAGAACGCCCCTTGAAACCCGGTCCTTGCTCTTCCATCTCCCCGT
CGTCCGACATGATGGATTTCACGATACATCCATACATATAGCAAGAGTAT
GGATCAACCGGGTAAGGTTACCAATCCTGCTCGTGGTCGTCAGCTGAACA
GGGAAAATGAATATTGTGTTCGTGCCTGATAAATTGGTCTGCGAGACAGA
CGTGTTCGGCAGTCCCTTCCCGCGTCAGCCTGCTCATGTCATCTCTATAC
TCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTTCCGAGTTCCGCGGC
GGCGTCCATTTATTTATTTTAAACCGACATCGCGTACGCCACCATCGGGT
CAGTCCCGACATTATCGGGTCACGCAATTGCGTCCAGATGGCGTTCACTG
CCGAGAGTCCGCCGGCACAGGGCCAGTAAGCCTCAAGGTAGTTCCGAACG
AGTGCTGCCTTGGCAGGTCACCATGGACCAATTAATATGCGCCTCTCTTT
CCCACACCCACTGTTGGTATGAAGTGGGCATGTTGAAAGTACCGTTATCC
GATAACGATTGCGGAATCGGGGGCGTCTATCGAGGGAAAGATGGCATACT
CTGCTGGCGTGGTTGCCGCTGTAGAGAAAGGTTGTTTTGGGCACGCGCTC
CTGTGGCGCGAGGGCGGGTCTCTAGCTTCTACCAGGTATTAATAGGGAGG
TGTGGGAGGTTATAATTATCATTATATTGCTACCTGTATTGCGTGGTATG
ATATTGACAAGGAACAAAGGATGTGTTGGTGTGTAGACATAACTAACTGT
ATGCTTATTATATAGCATAGTGCATTGTCATCTCATTTATTCTGGACGTC
TCGGACTTGACTTGTGGATGAACCAGCCGGGGTCACACAGGAGAAAGGTC
ACACAAGATTATCCACCTTCCTTCTGCGGTGCTTGCCTTAATTTTTATCG
CGAGAAGGGTTCAGCCATCCCTTTCCCTTTTCGACCGTGAAGTCGAATTT
TTTGTACTACTTGGAAGTATTTGGGCATTTTATTTTTAGTTTATTTTGTG
AGGAAAAATCCCAGTTCGTGTGACCGCACCGAGATTCGAACTCACGTTCC
AACGTCACAAGGTTTCGAGGTTACCAACTTAACCACCGAGTGTATCAGTG
TACCAGGGTATAGTATTTTCGTATGTTGCGTTCAAATGTACCGATAGTCA
ATCCGAGTTCAGTATAGATAGGGTTTGTGATATTTCGGCAGAGTAGTACG
GTATACGAAATGTCACACTTCATGTGTACAGTACCTTAATTGTAGTATAC
ACGTAACCCACAGTGAAGTGCTGCTCCAGCCCCTCGGCAGTAGAATGCAG
TACTGTCTTGTACACCTCGGGAGACTGACGTTCACTCCAAAACATTACAG
TATGTTATGGTCTAAACCAGGAAATTCGTCTTGCGCGAGTAATGCAGGTT
GATCGCGCTCGGCGTGTCCATGGGCGACCGGGTGTCAGGCTGGTGGTTCA
TATACTTGTTCACCTGGAGCAGATGCTGCGCGATCATGGTGAGGTACTAT
TAAAATAGTCGCCCGAGTGGTCTAGTAGTTAACCTGCACACCTGCTAGTG
CGGAAGTCGTGAGTTCGATTCTTACCAAAGTAGGATTTGTGTTCTTTCTT
TCGTAACGGAAAGCGTGGGAACGTGAGTAAGTAAAATTGTAAGGGTGCTG
AACTTGCATCGCGATAAAAAATTGTAAGGCGTGAACCGGGGAGAGATTGG
AAGATCCTTTGTGACCACAGGCAGGATGGTAATGATGAGGTCCATCGGCT
ATAAGTGAGATGAAAGAAAAAGAAGAAGAAAAAAAGTCCCAAACTTCGTC
AAGTCAAGGAGCTTTCCGCGAGGGTCTACGATCGGGAGTGATGTAGCCCG
CCCTGTTACCAAATATATTTGCATCCTCTAAATATGCGGGTGCATTAACG
CGTACTGCGCCGTGATTTTTGTTTCCATCTGCTGAATGGAGTGCGCTCAA
CCTCTTTTGTTTCATGTCGGCGCCACATCATCAGTCTGTACAAGGCTATT
ATAATAAAAATGCTGTTATGTTGCGTGTTCACGTGGTCGTTGCCAAGTTG
AGCTCACACGTTTTCCACGCGTAGGGTATGTGTTCTTCTTCAGCCACTTT
AAAGCCTGGGGCTCACACGTGATAGCTGGTCTTTGAACTATAATAGGCCA
TCTTATGGTACGACGCTCCGCAGGCGTGTAGAAATTGGCGACAATCGGAG
ATAAAGCAACAATTCAAAATAGCGCGCGGTAAATCGTGTTCACGGCAACA
TGGTAAACGCTCAACGGTTGAAAACACCATTTACTTTGCCTGCTGCCGTC
CCTTCAAGGTGTTTTTCCAAACTCTAGCATCGGGAAGGCGAGACGAGACA
TCAACGTCACAAGCGGTCTAATAAGTCCGGATCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig102:127576..134860-

>mRNA_A-nodosum_M_contig102.13.1 ID=mRNA_A-nodosum_M_contig102.13.1|Name=mRNA_A-nodosum_M_contig102.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig102:127576..134860- (Ascophyllum nodosum dioecious)
ATGATTATTTCCTTTCCCAAGGTTGATCGCGCTCGGCGTGTCCATGGGCG
ACCGGGTGTCAGGCTGGTGGTTCATATACTTGTTCACCTGGAGCAGATGC
TGCGCGATCATGGTGTTTTTCCAAACTCTAGCATCGGGAAGGCGAGACGA
GACATCAACGTCACAAGCGGTCTAATAAGTCCGGATCAG
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