mRNA_A-nodosum_M_contig10195.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10195.1.1
Unique NamemRNA_A-nodosum_M_contig10195.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10195.1.1 vs. uniprot
Match: A0A6H5K229_9PHAE (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K229_9PHAE)

HSP 1 Score: 783 bits (2023), Expect = 6.350e-273
Identity = 407/640 (63.59%), Postives = 492/640 (76.88%), Query Frame = 1
Query:    1 MDLVSFFAGRSEVLRVAPRHRIGLLNAAARANIQSATVTSSPLTDAGLDGTGEVIQVIDTGLDETSCYFVDEDGEEIAHGHYFEEL--GFTSGSDV--YAPFTGGDFSYDLNRRKIIQYINLVKSDSEPGQYGDY--FTTSSGRRFAWLSAADFEQDEATGHGTHTAGSAAGATLNAPAETVTCSGSDDLGCVGGCINPVSPTDDLLSFS-QFLYFDLDRLCPSFDCGGYGEEVCLGDDVDKTLTEHGGIAQGAKLAIFDIFYDDFGLGSYAGNGLWEACLEAGCKIHSNSYGGDNVCEIGAADVEYDDFMYNHPENLLIFAAGNDGDLDDGREVCTIGSPAIAKNVLAIGSTSSGKTRLTLTGSDGEARTGSNGVADIDTVSYFSSYGPTQDNRIKPELVAPGDLIYSAASDGTDSHSCRLWAHHGTSMSCPIVAGAAAMVRQYFMDDNFYATDVITRGLCDDGFVCESFSPSSATVKALLINSANLMGGSSEPNFSRGFGRVHMEAGMPLGGDGDLVVFVADAANTAISARTTQEYLFHVDGNAGLDLRATISWIDPASTTFSAKQLVHDLDLTVTSPIGTTHTMWSTGVTDVYNVNERVIIDAADVESGTWTISVWANELGTDVQRYSLVVNGAISS 1899
            M LVSFFAGR EVLRV+PRH   +LN AAR  IQSA+ T +PLTDAGLDGTGEVIQV+DTGLDETSC+F+D+ GEE+ HG++FEEL  G T  S +  Y  F  GDF+Y   RRK+IQYI LV  DS      DY  F+T+ G  + +L   +F QD++ GHGTHTAGSAAGATLN PAET+TCSG + LGCVGGCI+    TDDL+S++ Q    DLDRLCP + C G   + CL D+VD+TLT++GG+AQGAKL+IFD+F++ FGL    GNG+WE CLEAGCK+HS S GGD +C  G +++ YDDFMY +PENLLIFAAGNDG+ +  R VCT+ SPAI KNVLA+G+++SG TR+  T           G A ID V+ FSSYG T D RIKPE+VAPGD++YSAASDGTDSHSCRLWA+ GTSMSCPIVAGAAAMVRQYF+D+ FY  DV  RG C DGF+CE FSPS+ATVKALLINSANLMG SS+P+  RGFGR+H+E GMPL G+GDL +FVADA +T+I+  T QEYLF VD +AGL+LRAT+SWID  +T+ SA QLV+DLDL V SP GT + MW + VTD  NVNERVI+DA DVE+GTWT+ V++N L TD Q YSLVVNGAIS+
Sbjct:  321 MGLVSFFAGRPEVLRVSPRHTKRVLNEAARGIIQSASATDTPLTDAGLDGTGEVIQVVDTGLDETSCFFIDDGGEEVDHGYFFEELFVGSTGSSQLIYYPVFEAGDFTYTEERRKVIQYIELVNPDS------DYVAFSTTQGGVYPFLPPDEFGQDDSAGHGTHTAGSAAGATLNDPAETLTCSGDETLGCVGGCIDESETTDDLVSYAIQIALPDLDRLCPMYGCDG-STDPCLSDEVDETLTKNGGMAQGAKLSIFDVFFEVFGLIEVLGNGVWEPCLEAGCKVHSLSLGGDTLCTPGESEILYDDFMYENPENLLIFAAGNDGETE--RSVCTMASPAIGKNVLAVGASTSGDTRVIST----------EGGAGIDMVADFSSYGFTTDGRIKPEVVAPGDMVYSAASDGTDSHSCRLWAYQGTSMSCPIVAGAAAMVRQYFVDETFYTADVTARGFCSDGFICEGFSPSAATVKALLINSANLMGESSQPDAYRGFGRIHLEQGMPLEGEGDLALFVADALDTSIAEDTVQEYLFDVDADAGLELRATLSWIDYPATSTSAMQLVNDLDLVVVSPSGTVYRMWGSDVTDNRNVNERVIVDADDVETGTWTVLVYSNSLVTDSQSYSLVVNGAISA 941          
BLAST of mRNA_A-nodosum_M_contig10195.1.1 vs. uniprot
Match: D8LNG4_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG4_ECTSI)

HSP 1 Score: 773 bits (1996), Expect = 2.890e-272
Identity = 407/670 (60.75%), Postives = 490/670 (73.13%), Query Frame = 1
Query:    1 MDLVSFFAGRSEVLRVAPRHRIGLLNAAARANIQSATVTSSPLTDAGLDGTGEVIQVIDTGLDETSCYFV-DEDGEEIAHGHYFEELGF----TSGS----------------------------DVYAPFTGGDFSYDLNRRKIIQYINLVKSDSEPGQYGDYFTTSSGRRFAWLSAADFEQDEATGHGTHTAGSAAGATLNAPAETVTCSGSDDLGCVGGCINPVSPTD-DLLSFSQFLYFDLDRLCPSF---DCGGYGEEVCLGDDVDKTLTEHGGIAQGAKLAIFDIFYDDFGLGSYAGNGLWEACLEAGCKIHSNSYGGDNVCEIGAADVEYDDFMYNHPENLLIFAAGNDGDLDDGREVCTIGSPAIAKNVLAIGSTSSGKTRLTLTGSDGEARTGSNGVADIDTVSYFSSYGPTQDNRIKPELVAPGDLIYSAASDGT-DSHSCRLWAHHGTSMSCPIVAGAAAMVRQYFMDDNFYATDVITRGLCDDGFVCESFSPSSATVKALLINSANLMGGSSEPNFSRGFGRVHMEAGMPLGGDGDLVVFVADAANTAISARTTQEYLFHVDGNAGLDLRATISWIDPASTTFSAKQLVHDLDLTVTSPIGTTHTMWSTGVTDVYNVNERVIIDAADVESGTWTISVWANELGTDVQRYSLVVNGAIS 1896
            M LVSF A + EVLRVAPR    LLNAAARANIQSATVT +PLTDAGLDGTG+V+QVID+G+DE+SC+F  DE G+ + HGHYFEE G     TS S                             +   F GGDF+   +RRKIIQYINL+KSD   G +GD FTTS G+++ WLSA  FE D+  GHGTH AGS AGATLN PAE ++C+ ++ + CVG C++     D D L+       DLDRLCP F   DC G   + CL DDV +TLT +GG+AQGAKLAIFD FYD FGL  + G GLWE C +A CKIHSNSYGGD  C +G+ DV YD++M ++PENLLIFAAGNDG+L   R  CTIGSPAIAKNVLA+G+++SG TRL+ T   G           IDTV+ FSSYGPT D+RIKPE++APGD IYSAASDG+ D+HSCRLWA+ GTSMS PIVAGA+AM+RQYFM++ F+ATD+  RG CD+   CE+FSPSSAT+KAL+INSANLMG SSEPN SRGFGR+H+EAGMPLGG+G L +FV+D+  T+I   T QEY F V+  AGLDLR T+SW+DP +TTFSA QLVHDLDL V SP GT +TMW++GVTD  NVNERVI+DA DVE+GTW++ +WA+ L TDVQ YSLVVNGAIS
Sbjct:    1 MGLVSFLASKPEVLRVAPRQSQALLNAAARANIQSATVTDTPLTDAGLDGTGQVVQVIDSGVDESSCFFAHDESGDHVPHGHYFEEWGINPSLTSSSFSSPXXXXXXXXXXXPWATADHHTGSYYQIAEEFDGGDFTIYPDRRKIIQYINLIKSDDTEGSHGDSFTTSLGQQYPWLSADHFEYDDEAGHGTHVAGSVAGATLNTPAELISCNDTETMSCVGACVDDDEANDVDDLATPYVEIADLDRLCPLFSDYDCDGLETDKCLSDDVAETLTNNGGMAQGAKLAIFDAFYDTFGLSPFVGTGLWEPCADADCKIHSNSYGGDFECSLGSNDVLYDEWMVSNPENLLIFAAGNDGELR--RSTCTIGSPAIAKNVLAVGASTSGDTRLSATPGSG-----------IDTVAVFSSYGPTSDSRIKPEVLAPGDAIYSAASDGSVDTHSCRLWAYVGTSMSTPIVAGASAMIRQYFMNETFFATDMTARGFCDEWAGCEAFSPSSATLKALMINSANLMGESSEPNGSRGFGRIHLEAGMPLGGEGSLALFVSDSNYTSIPELTRQEYNFDVNATAGLDLRVTLSWLDPPATTFSAVQLVHDLDLVVISPNGTRYTMWASGVTDSSNVNERVIVDADDVETGTWSVWIWADNLTTDVQSYSLVVNGAIS 657          
BLAST of mRNA_A-nodosum_M_contig10195.1.1 vs. uniprot
Match: A0A6H5JQT4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT4_9PHAE)

HSP 1 Score: 762 bits (1968), Expect = 1.450e-263
Identity = 404/669 (60.39%), Postives = 484/669 (72.35%), Query Frame = 1
Query:    1 MDLVSFFAGRSEVLRVAPRHRIGLLNAAARANIQSATVTSSPLTDAGLDGTGEVIQVIDTGLDETSCYFV-DEDGEEIAHGHYFEELGF------------TSGSD-------------------VYAPFTGGDFSYDLNRRKIIQYINLVKSDSEPGQYGDYFTTSSGRRFAWLSAADFEQDEATGHGTHTAGSAAGATLNAPAETVTCSGSDDLGCVGGCINPVSPTD-DLLSFSQFLYFDLDRLCPSF---DCGGYGEEVCLGDDVDKTLTEHGGIAQGAKLAIFDIFYDDFGLGSYAGNGLWEACLEAGCKIHSNSYGGDNVCEIGAADVEYDDFMYNHPENLLIFAAGNDGDLDDGREVCTIGSPAIAKNVLAIGSTSSGKTRLTLTGSDGEARTGSNGVADIDTVSYFSSYGPTQDNRIKPELVAPGDLIYSAASDGT-DSHSCRLWAHHGTSMSCPIVAGAAAMVRQYFMDDNFYATDVITRGLCDDGFVCESFSPSSATVKALLINSANLMGGSSEPNFSRGFGRVHMEAGMPLGGDGDLVVFVADAANTAISARTTQEYLFHVDGNAGLDLRATISWIDPASTTFSAKQLVHDLDLTVTSPIGTTHTMWSTGVTDVYNVNERVIIDAADVESGTWTISVWANELGTDVQRYSLVVNGAIS 1896
            M LVSF A + EVLRVAPR    LLNA+ARANIQSATVT +PLTDAGLDGTG+V+QVID+G+DE+SC+F  DE G+ + HGHYFEE G             TS  D                   +   F GGDF+   +RRKIIQYINL+KSD   G +GD FTTS G+++ WL A  FE D   GHGTH AGS AGATLN PAE ++C  ++ + CVG C++     D D L+       DLDRLCP F   DC     E CL DDV +TLT +GG+AQGAKLAIFD FYD+FGL  + GNGLWE C EA CKIHSNSYGGD  C +G  DV YD +M ++PENLLIFAAGNDG  +  R  CT+ SPAIAKNVLA+G+++SG TRL+ T   G           IDTV+ FSSYGPT D+RIKPE++APGD IYSAASDG+ DSHSCRLWA+ GTSMS PIVAGA+AM+RQYFM++ F+ATD+  RG CD+   CE+FSPSSAT+KAL+INSANLMGGSSEP+ SRGFGR+H+EAGMPL G+G L +FV+D+  T+I  RT QEY F V+  A LDLR T+SW+DP +TTFSA QLVHDLDL V SP GT +TMW++GVTD  NVNERVI+DA DVE+GTW++ +WA+ L TDVQ YSLVVNGAIS
Sbjct:  312 MGLVSFLASKPEVLRVAPRQSQALLNASARANIQSATVTDTPLTDAGLDGTGQVVQVIDSGVDESSCFFAHDESGDHVPHGHYFEEWGINPPLTSSSFSSPTSDDDDSLGWPRATDDHRTGSYYQIAEEFDGGDFTIFPDRRKIIQYINLIKSDDTEGSHGDSFTTSLGQQYPWLPADRFEYDYEAGHGTHVAGSVAGATLNTPAELISCKDTETMSCVGACVDDDEANDVDDLATPNVEIVDLDRLCPLFSDYDCDVLETEKCLSDDVAETLTNNGGMAQGAKLAIFDAFYDNFGLSPFVGNGLWEPCAEADCKIHSNSYGGDFECSLGPNDVLYDGWMVSNPENLLIFAAGNDG--ERRRSTCTMSSPAIAKNVLAVGASTSGDTRLSATPGLG-----------IDTVAVFSSYGPTSDSRIKPEVLAPGDAIYSAASDGSMDSHSCRLWAYAGTSMSTPIVAGASAMIRQYFMNETFFATDMTARGFCDEWAGCEAFSPSSATLKALMINSANLMGGSSEPDGSRGFGRIHLEAGMPLRGEGSLALFVSDSNYTSIPERTRQEYNFDVNATARLDLRVTLSWLDPPATTFSAVQLVHDLDLVVISPNGTRYTMWASGVTDSANVNERVIVDAGDVETGTWSVWIWADNLTTDVQSYSLVVNGAIS 967          
BLAST of mRNA_A-nodosum_M_contig10195.1.1 vs. uniprot
Match: A0A6H5K365_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K365_9PHAE)

HSP 1 Score: 718 bits (1853), Expect = 4.990e-251
Identity = 388/648 (59.88%), Postives = 460/648 (70.99%), Query Frame = 1
Query:    1 MDLVSFFAGRSEVLRVAPRHRIGLLNAAARANIQSATVTSSPLTDAGLDGTGEVIQVIDTGLDETSCYFVDEDGEEIAHGHYFEELG-------FTSGSDVYAPFTGGDFSYDLNRRKIIQYINLVKSDSEPGQYGDYFTTSSGRRFAWLSAADF-EQDEAT-------GHGTHTAGSAAGATLNAPAETVTCSGSDDLGCVGGCINPVSPTDDLLSFS-QFLYFDLDRLCPSFDCGGYGEEVCLGDDVDKTLTEHGGIAQGAKLAIFDIFYDDFGLGSYAGNGLWEACLEAGCKIHSNSYGGDNVCEIGAADVEYDDFMYNHPENLLIFAAGNDGDLDDGREVCTIGSPAIAKNVLAIGSTSSGKTRLTLTGSDGEARTGSNGVADIDTVSYFSSYGPTQDNRIKPELVAPGDLIYSAASDGTDSHSCRLWAHHGTSMSCPIVAGAAAMVRQYFMDDNFYATDVITRGLCDDGFVCESFSPSSATVKALLINSANLMGGSSEPNFSRGFGRVHMEAGMPLGGDGDLVVFVADAANTAISARTTQEYLFHVDGNAGLDLRATISWIDPASTTFSAKQLVHDLDLTVTSPIGTTHTMWSTGVTDVYNVNERVIIDAADVESGTWTISVWANELGTDVQRYSLVVNGAIS 1896
            M LVS  AGR EVLRV+PR    +LNAAAR  +QSA+ T +PLTDAGLDGTGE+IQVID+GLDETSCYF+D+ GEE+ HG+YF+EL          S  +    F GGDFSY   RRKIIQYI+LV  DS    Y  ++T+       +L    F E DEA                SAAGATLN PAET+TC+ +D L CVG CI+ +  TDDL+S S Q    DLDRLCP + C    +  CL DDV +TL+ +GG+AQGAKLAIFD+FY D+   S  GN LWE C EAGCK+HSNS G D  C I + D+  D FMY + E+LLIFAAGN+G   + R  CTI +P I KN LAIG+++SG TR+  T           G   I+TV+ FSS+G T D+RIKPE+VAPGD +YSAASDGTD+HSCRLWA+ GTSMSCPIVAGAAAM+RQYFMD+ FY  DV  RG C D F+CE FSPS+ATVKALLINSANLMGGSSEP+  RGFGRVH+EAGMPL G+G+LV+FVADA +T+I+  T  EYLF VD +AGLDLRAT+SWIDP ST  SA QLVH+LDL V SP GTT+ MW +  TD  NVNERVI+DA DV +GTWT+ VWAN L TD Q YSLVVNGAIS
Sbjct:   33 MGLVSVLAGRPEVLRVSPRPTKRVLNAAARGIVQSASATDTPLTDAGLDGTGEIIQVIDSGLDETSCYFIDDSGEEVDHGYYFDELAQAAVYSSLYSSDETATIFNGGDFSYYPERRKIIQYIDLVNPDSP---YSSFYTSQGSYIGYFLPPDQFGEDDEARVALRKKDPSQARVGRSAAGATLNNPAETITCNVTDTLSCVGACIDLLDVTDDLVSISHQTGGTDLDRLCPMYGCDNSTDTTCLSDDVPETLSNNGGMAQGAKLAIFDVFYGDYDASSSIGNNLWEVCTEAGCKLHSNSLGADFECSIASWDILNDQFMYENAEHLLIFAAGNEG--GEERSTCTINTPGIGKNSLAIGASTSGDTRVISTV----------GATGINTVAEFSSWGFTTDDRIKPEVVAPGDSVYSAASDGTDTHSCRLWAYEGTSMSCPIVAGAAAMIRQYFMDETFYMADVTARGFCSDVFICEGFSPSAATVKALLINSANLMGGSSEPDGFRGFGRVHLEAGMPLEGEGNLVLFVADALDTSIAEGTLDEYLFDVDADAGLDLRATLSWIDPPSTATSAVQLVHNLDLVVVSPDGTTYRMWGSETTDNRNVNERVIVDATDVVTGTWTVWVWANSLITDSQSYSLVVNGAIS 665          
BLAST of mRNA_A-nodosum_M_contig10195.1.1 vs. uniprot
Match: D8LNG6_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG6_ECTSI)

HSP 1 Score: 718 bits (1854), Expect = 9.560e-248
Identity = 383/640 (59.84%), Postives = 450/640 (70.31%), Query Frame = 1
Query:    1 MDLVSFFAGRSEVLRVAPRHRIGLLNAAARANIQSATVTSSPLTDAGLDGTGEVIQVIDTGLDETSCYFVDEDGEEIAHGHYFEELGFT-------SGSDVYAPFTGGDFSYDLNRRKIIQYINLVKSDSEPGQYGDYFTTSSGRRFAWLSAADFEQDEATGHGTHTAGSAAGATLNAPAETVTCSGSDDLGCVGGCINPVSPTDDLLSFS-QFLYFDLDRLCPSFDCGGYGEEVCLGDDVDKTLTEHGGIAQGAKLAIFDIFYDDFGLGSYAGNGLWEACLEAGCKIHSNSYGGDNVCEIGAADVEYDDFMYNHPENLLIFAAGNDGDLDDGREVCTIGSPAIAKNVLAIGSTSSGKTRLTLTGSDGEARTGSNGVADIDTVSYFSSYGPTQDNRIKPELVAPGDLIYSAASDGTDSHSCRLWAHHGTSMSCPIVAGAAAMVRQYFMDDNFYATDVITRGLCDDGFVCESFSPSSATVKALLINSANLMGGSSEPNFSRGFGRVHMEAGMPLGGDGDLVVFVADAANTAISARTTQEYLFHVDGNAGLDLRATISWIDPASTTFSAKQLVHDLDLTVTSPIGTTHTMWSTGVTDVYNVNERVIIDAADVESGTWTISVWANELGTDVQRYSLVVNGAIS 1896
            M LVSF AGR EVLRV+PR    +LNAAAR  IQSA+ T +PLTDAGLDGTGE+IQVID+GLDETSCYF+D+ GEE+ HG+YF+ELG         S  +    F GGDFSY   RRK                                           GHGTHTAGSAAGATLN PAET+TC+ +D L CVG CI+ +  TDDL+S S Q    DLDRLCP + C    +  CL DDV +TL+ +GG+AQGAKLAIFD+FY  +   S  GN LWE C EAGCK+HSNS G D  C I + D+  D FMY + ENLLIFAAGN+G ++  R  CTI +P I KN LAIG+++SG TR+  T           G   IDTV+ FSS+G T D+RIKPE+VAPGD +YSAASDGTD+HSCRLWA+ GTSMSCPIVAGAAAM+RQYF+D+ FY  DV  RG C DGF+CE FSPS+ATVKALLINSANLMGGSSEP+  RGFGRVH+EAGMPL G+GDLV+FVADA +T+I+  T +EYLF VD +AGLDLRAT+SWIDP +T  SA QLVH+LDL V SP GTT+ MW +  TD  NVNERVI+DA DV +GTWT+ VWAN L TD Q YSLVVNGAIS
Sbjct:  319 MGLVSFLAGRPEVLRVSPRPTKRVLNAAARGVIQSASATDTPLTDAGLDGTGEIIQVIDSGLDETSCYFIDDSGEEVDHGYYFDELGRAAVYSSSYSSDETATIFNGGDFSYYPERRKA------------------------------------------GHGTHTAGSAAGATLNDPAETITCNVTDTLSCVGACIDLLDATDDLVSISSQTDGTDLDRLCPMYGCDNSTDTTCLSDDVPETLSNNGGMAQGAKLAIFDVFYGGYDASSSIGNNLWEVCTEAGCKLHSNSLGADFECSIASWDILNDQFMYENAENLLIFAAGNEGGIE--RSTCTINTPGIGKNSLAIGASTSGDTRVISTV----------GATGIDTVAEFSSWGFTTDDRIKPEVVAPGDSVYSAASDGTDTHSCRLWAYEGTSMSCPIVAGAAAMIRQYFVDETFYTADVTARGFCSDGFICEGFSPSAATVKALLINSANLMGGSSEPDGFRGFGRVHLEAGMPLEGEGDLVLFVADALDTSIAGGTLEEYLFDVDADAGLDLRATLSWIDPPATATSAVQLVHNLDLVVVSPDGTTYRMWGSDTTDNRNVNERVIVDATDVVTGTWTVWVWANNLVTDSQSYSLVVNGAIS 904          
BLAST of mRNA_A-nodosum_M_contig10195.1.1 vs. uniprot
Match: A0A2I6U1R2_SACJA (Subtilisin (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1R2_SACJA)

HSP 1 Score: 665 bits (1715), Expect = 5.170e-228
Identity = 360/617 (58.35%), Postives = 429/617 (69.53%), Query Frame = 1
Query:    1 MDLVSFFAGRSEVLRVAPRHRIGLLNAAARANIQSATVTSSPLTDAGLDGTGEVIQVIDTGLDETSCYFVDEDGEEIAHGHYFEELGFTSGSDVYAPFTGGDFSYDLNRRKIIQYINLVKSDSEPGQYGDYFTTSSGRRFAWLSAADFEQDEATGHGTHTAGSAAGATLNAPAET-VTCSGSDDLGCVGGCINP--VSPTDDLLS----FSQFLYFDLDRLCPSFDCGGYGEEVCLGDDVDKTLTEHGGIAQGAKLAIFDIFYDDFGLGSYAGNGLWEACLEAGCKIHSNSYGGDNVCEIGAADVEYDDFMYNHPENLLIFAAGNDGDLDDGREVCTIGSPAIAKNVLAIGSTSSGKTRLTLTGSDGEARTGSNGVADIDTVSYFSSYGPTQDNRIKPELVAPGDLIYSAASDGTDSHSCRLWAHHGTSMSCPIVAGAAAMVRQYFMDDNFYATDVITRGLCDD-GFVCESFSPSSATVKALLINSANLMGGSSEPNFSRGFGRVHMEAGMPLGGDGDLVVFVADAANTAISARTTQEYLFHVDGNAGLDLRATISWIDPASTTFSAKQLVHDLDLTVTSPIGTTHTMWST-GVTDVYNVNERVIIDAADVESGTWT 1824
            M LVSF + R EVLRV+PRH   LLNA AR  IQSAT+T +PLTDAGLDGTG+VIQVIDTGLDETSC+F+D+DGEE+ HGHY+E LG                              ++ S S                          +D+  GHGTH AGSA GAT+  PAET  TCSG++  GCVGGCI+    S  DDL +    +S +   D+DRLCP  DC    +  CL DDV +TL +HGG+AQGAKLA FD+F D      + GNGLWE CLEAGCKIHS S G D  C +   DV YDDFMYN+PENL++ AAGN GD +DGR VCT+ SPAI KN LA+G+TSSG+TR+T T +DG+   G+NG AD+DTV+ FSSYGPTQD RIKPE+VAPGD IYSA SDG+D+HSCRL A  GTSM+CPIVAGA+AMVRQYFMD++FY  D   RG  DD G  CESFSPSSATVKALLINSANLMGGSSEP+  RGFGR+H+E GMPL G+G L +FVAD++ T++    +Q+++F VD NA LD RAT+SWIDP +++ S  QLVHDLDL V SP G TH MW+T G  D  NVNERVII A DVESGT+T
Sbjct:  317 MGLVSFLSNRLEVLRVSPRHADRLLNAVARTIIQSATITEAPLTDAGLDGTGQVIQVIDTGLDETSCFFIDDDGEEVPHGHYYEALG-----------------------------EIIPSSSSA------------------------RDDVEGHGTHCAGSALGATIRTPAETPTTCSGTEVPGCVGGCIDADRTSWGDDLFTLMPEYSPY-DIDIDRLCPMIDCDDATDPRCLSDDVGQTLADHGGMAQGAKLAFFDVFADGSSGTHFVGNGLWEPCLEAGCKIHSMSIGADFECSVCEKDVLYDDFMYNNPENLVVVAAGNAGDTEDGRTVCTMYSPAIGKNALAVGATSSGETRITKTSADGDLIDGTNGYADVDTVAQFSSYGPTQDGRIKPEVVAPGDAIYSARSDGSDNHSCRLSAKSGTSMACPIVAGASAMVRQYFMDESFYVADQAARGWSDDSGRRCESFSPSSATVKALLINSANLMGGSSEPDGYRGFGRIHLEMGMPLDGEGSLALFVADSSYTSLPELCSQDFIFDVDANANLDFRATLSWIDPPASSASGVQLVHDLDLEVVSPSGATHIMWATSGEVDSRNVNERVIIAAEDVESGTYT 879          
BLAST of mRNA_A-nodosum_M_contig10195.1.1 vs. uniprot
Match: A0A6H5JKA8_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA8_9PHAE)

HSP 1 Score: 672 bits (1733), Expect = 2.760e-227
Identity = 370/702 (52.71%), Postives = 470/702 (66.95%), Query Frame = 1
Query:    1 MDLVSFFAGRSEVLRVAPRHRIGLLNAAARANIQSATVTSSPLTDAGLDGTGEVIQVIDTGLDETSCYFVDEDGEE-IAHGHYFEELGFTSGS------------DVYAPFTGGDFSYDLNRRKIIQYINLVKSDSEPG--------------------------QYGDYFTTSSGRRFAWLSAADFEQDEATGHGTHTAGSAAGATLNAPAETVT------CSGSDDLGCVGGCINPVSP--TDDLLSFSQFLYF-------DLDRLCPSFDCGGYGEEVCLGDDVDKTLTEHGGIAQGAKLAIFDIFYDDFGLG-SYAGNGLWEACLEAGCKIHSNSYGGDNVCEIGAADVEYDDFMYNHPENLLIFAAGNDGDLDDGREVCTIGSPAIAKNVLAIGSTSSGKTRLTLTGSDGEARTGSNGVADIDTVSYFSSYGPTQDNRIKPELVAPGDLIYSAASDGTDSHSCRLWAHHGTSMSCPIVAGAAAMVRQYFMDDNFYATDVITRGLCDDGFVCESFSPSSATVKALLINSANLMGGSSEPNFSRGFGRVHMEAGMPLGGDGDLVVFVADAANTAISARTTQEYLFHVDGNAGLDLRATISWIDPASTTFSAKQLVHDLDLTVTSPIGTTHTMWSTGVTDVYNVNERVIIDAADV---------------ESGTWTISVWANEL-GTDVQRYSLVVNGAI 1893
            M L+SF A R EVLRV+P   I LLNAAA  N+QSA++T SP+TDAGLDGTGEVIQ++DTGLD  SC+FVDEDG E +AHG+YFEE+G  + S             +   FTGGDF++DL+RRK +       S   P                            YG+ + TS+G ++ W+SAA+F +D+A GHGTHTAGSAAGA +++P+ + T      C    +L CVGGCI+   P   DDL++   + YF       DLDRLCP  DC    EE CLGDD  +TL +HGG+A+GA+LAIFDI  D  G+G   AGNG+WE  +EAG K+ SNS+G    C+  + DV +DDFMY + + LL+FAAGNDGD   G   CT+G+PA+AKNVLA+G+++SG  RL+ T  DG+   G + V DID ++YFSS+GPT DNRIKPE+VAPGD+IYSAA  G  +++CRLW + GTSMS PIVAGAAA+VRQYF ++ FYA DV  RG CD  F CE F+PS+ATVKA+LINSANLMGGS+EP+  RGFGRVH+EAGMPL G+GD  +FVAD+A T+ +  T  EY F VD  AG+DLRAT+SWIDP +TTFS+ QLVHDLDL+V SP G  ++MW  G  D  N NERVI+ A+++                 GTWT+ VW+  L G + Q YSLVV GAI
Sbjct:  380 MALLSFLASRPEVLRVSPARAIKLLNAAAYHNVQSASLTESPMTDAGLDGTGEVIQIVDTGLDVNSCFFVDEDGGEGVAHGYYFEEIGVEASSFGSWFTSWDFNVQIARVFTGGDFNFDLSRRKGLVVDAAHPSCDSPNISRRFALGDVRAWSGENPACTANNSTNYGESWATSAGEQYPWISAAEFAEDDAGGHGTHTAGSAAGAVVSSPSYSQTGDFTEVCEEGRELSCVGGCIDVDDPFGEDDLITTWDYQYFWAGYEAIDLDRLCPRLDCDDLPEEYCLGDDEAETLQQHGGVARGAQLAIFDIINDYTGVGIDMAGNGMWEPAMEAGSKLSSNSWGIYAYCDYLSLDVLFDDFMYRNQDQLLLFAAGNDGDDWSG---CTMGTPALAKNVLAVGASTSGPGRLSFTDEDGDPTDGDSRVQDIDAMAYFSSFGPTLDNRIKPEVVAPGDMIYSAAGSGDGNYTCRLWQYAGTSMSTPIVAGAAALVRQYFKNETFYAHDVEERGFCDS-FGCEPFAPSAATVKAMLINSANLMGGSAEPDGLRGFGRVHLEAGMPLAGEGDNALFVADSAVTSTAELTLTEYSFAVDAAAGIDLRATLSWIDPPATTFSSVQLVHDLDLSVYSPTGLRYSMWRDGTVDSLNNNERVIVPASNILDQTSSDATTAEDGESDGTWTVRVWSKRLAGNETQSYSLVVTGAI 1077          
BLAST of mRNA_A-nodosum_M_contig10195.1.1 vs. uniprot
Match: A0A2I6U1S5_SACJA (Subtilisin n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1S5_SACJA)

HSP 1 Score: 650 bits (1676), Expect = 2.650e-221
Identity = 356/639 (55.71%), Postives = 433/639 (67.76%), Query Frame = 1
Query:    1 MDLVSFFAGRSEVLRVAPRHRIGLLNAAARANIQSATVTSSPLTDAGLDGTGEVIQVIDTGLDETSCYFVDEDGEEIAHGHYFEELGFTSGSDVYAPFTGGDFSYDLNRRKIIQYINLVKSDSEPGQYGDYFTTSSGRRFAWLSAADFEQDEATGHGTHTAGSAAGATLNAPAET-VTCSGSDDLGCVGGCINP--VSPTDDLLSF---SQFLYFDLDRLCPSFDCGGYGEEVCLGDDVDKTLTEHGGIAQGAKLAIFDIFYDDFGLGSYAGNGLWEACLEAGCKIHSNSYGGDNVCEIGAADVEYDDFMYNHPENLLIFAAGNDGDLDDGREVCTIGSPAIAKNVLAIGSTSSGKTRLTLTGSDGEARTGSNGVADIDTVSYFSSYGPTQDNRIKPELVAPGDLIYSAASDGTDSHSCRLWAHHGTSMSCPIVAGAAAMVRQYFMDDNFYATDVITRGLCDD-GFVCESFSPSSATVKALLINSANLMGGSSEPNFSRGFGRVHMEAGMPLGGDGDLVVFVADAANTAISARTTQEYLFHVDGNAGLDLRATISWIDPASTTFSAKQLVHDLDLTVTSPIGTTHTMWST-GVTDVYNVNERVIIDAADVESGTWTISVWANELGTDVQRYSLVVNGAI 1893
            M LVSF + R EV RV+PRH   LLNA AR  IQSAT+T +PLT AGLDGTG+VIQVI                                                       QYINL+K+DS  G      TTS G R  W+S   F+ D+   HGTHTAGSA GAT+  PAET  TCSG++  GCVGGCI+    S  DDLL+    +     D+DR+CP   C    E  CL D V++TL +HGG+AQGAKL+ FDI+  +     + GNGLWE CLEAGCKIHS S+G D  C +   D+ YDDFMYN+PENL++ AAGN G+++DGR VCT+ SPAI KN LA+G+TSSG+TR+ +T +DG+   G+NG +D+DTV+ FSSYGPTQD RIKPE+VAPGD +YSA SDG+D HSCRL A  GTSM+CPIVAGA+AMVRQYFMD++FY  D   RG CDD G  CESFSPSSATVKALLINSANLMGGSSEP+  RGFGR+H+E GMPL G+G L +FVAD++ T++   ++Q+++F VD NA LD RAT+SWIDP +++ S  QLVHDLDL V SP G TH MW+T G  D  NVNERVII A +VESGT+T+ V  N L TD Q YSLVVNGA+
Sbjct:  317 MGLVSFLSSRLEVSRVSPRHADRLLNAVARTIIQSATITKAPLTAAGLDGTGQVIQVI-------------------------------------------------------QYINLIKADSVSGPASS--TTSGGNRVWWVSPDGFQGDDVDDHGTHTAGSALGATIRTPAETPTTCSGTEVPGCVGGCIDADRTSWGDDLLTLMPENSSYVADIDRICPMLGCDEENEPWCLSDGVEQTLADHGGMAQGAKLSFFDIYDGNMLFEQFIGNGLWEPCLEAGCKIHSLSFGADLECAVRDTDLLYDDFMYNNPENLVVVAAGNAGEIEDGRTVCTMYSPAIGKNALAVGATSSGETRVGVTSADGDRADGTNGYSDVDTVAVFSSYGPTQDGRIKPEVVAPGDAVYSARSDGSDVHSCRLSAKSGTSMACPIVAGASAMVRQYFMDESFYLADQAARGWCDDSGRQCESFSPSSATVKALLINSANLMGGSSEPDGFRGFGRIHLEMGMPLDGEGSLALFVADSSYTSLPELSSQDFVFDVDANANLDFRATLSWIDPPASSTSGVQLVHDLDLEVVSPSGATHIMWATSGEVDSRNVNERVIIAAENVESGTYTVRVSTNHLLTDSQNYSLVVNGAM 898          
BLAST of mRNA_A-nodosum_M_contig10195.1.1 vs. uniprot
Match: A0A2I6U1Q9_SACJA (Subtilisin n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1Q9_SACJA)

HSP 1 Score: 629 bits (1623), Expect = 3.020e-217
Identity = 353/634 (55.68%), Postives = 412/634 (64.98%), Query Frame = 1
Query:    1 MDLVSFFAGRSEVLRVAPRHRIGLLNAAARANIQSATVTSSPLTDAGLDGTGEVIQVIDTGLDETSCYFVDEDGEEIAHGHYFEELGFTSGSDVYAPFTGGDFSYDLNRRKIIQYINLVKSDSEPGQYGDYFTTSSGRRFAWLSAADFEQDEATGHGTHTAGSAAGATLNAPAET-VTCSGSDDLGCVGGCINPVSPTDDLLSFSQFLYFDLDRLCPSFDCGGYGEEVCLGDDVDKTLTEHGGIAQGAKLAIFDIFYDDFGLGSYAGNGLWEACLEAGCKIHSNSYGGDNVCEIGAADVEYDDFMYNHPENLLIFAAGNDGDLDDGREVCTIGSPAIAKNVLAIGSTSSGKTRLTLTGSDGEARTGSNGVADIDTVSYFSSYGPTQDNRIKPELVAPGDLIYSAASDGTDSHSCRLWAHHGTSMSCPIVAGAAAMVRQYFMDDNFYATDVITRGLCDD-GFVCESFSPSSATVKALLINSANLMGGSSEPNFSRGFGRVHMEAGMPLGGDGDLVVFVADAANTAISARTTQEYLFHVDGNAGLDLRATISWIDPASTTFSAKQLVHDLDLTVTSPIGTTHTMWST-GVTDVYNVNERVIIDAADVESGTWTISVWANELGTDVQRYSLVVNGAI 1893
            M LVSF + R EVLRV+PRH   LLNA AR  IQSAT+T +PLTDAGLDGTG+VIQVI                                                       QYINL+K+DS PG      TTS G +  W S   F+ D+  GHGTH AGSA GAT+  PAET  TCSG++  GCVGGCI+          +SQ +  +LDR CP   C    +  CL DDV +TL  HGG+AQGAKLA FDIF D   L  Y GNGLWE CLEAGCKIHS S GGD  C +   DV YDDFMYN+PENL++ AAGN GD+ DGR VCT+ SPAI                   T +DG+   G+NG AD+DTV+ FSSYGPTQD RIKPE+VAPGD  YSA SDG D HSCRL A  GTSM+CPIVAGA+AMVRQYFMD++FY  D   RG CDD G  CESFSPSSATVKALLINSANLMGGSSEP+  RGFGR+H+E GMPL G+G L +FVAD++ T++   ++ +++F VD +A LD RAT+SWIDP +++ S  QLVHDLDL V SP G TH MW+T G  D  NVNERVII AADVESGT+T+ V  N L TD Q YSLVVNGA+
Sbjct:  109 MGLVSFLSSRLEVLRVSPRHAGRLLNAVARTIIQSATITEAPLTDAGLDGTGQVIQVI-------------------------------------------------------QYINLIKADSVPGPVSS--TTSGGDKVRWFSPDHFQGDDIEGHGTHCAGSALGATIRTPAETPTTCSGTEVPGCVGGCIDA--------EYSQ-IGVNLDRFCPMIQCDDATDPRCLSDDVGQTLANHGGMAQGAKLAFFDIFADGGALTPYVGNGLWEPCLEAGCKIHSMSIGGDLECAVHGLDVLYDDFMYNNPENLVVVAAGNAGDIQDGRTVCTMYSPAIGT-----------------TSADGDLADGTNGYADVDTVAQFSSYGPTQDGRIKPEVVAPGDTTYSARSDGGDDHSCRLSAQFGTSMACPIVAGASAMVRQYFMDESFYLADQAARGWCDDSGRQCESFSPSSATVKALLINSANLMGGSSEPDGFRGFGRIHLEMGMPLDGNGSLSLFVADSSYTSLPELSSHDFVFDVDADANLDFRATLSWIDPPASSTSGVQLVHDLDLEVVSPSGATHIMWATSGEVDSRNVNERVIIAAADVESGTYTVRVSTNHLLTDSQGYSLVVNGAM 659          
BLAST of mRNA_A-nodosum_M_contig10195.1.1 vs. uniprot
Match: A0A6H5L2G3_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G3_9PHAE)

HSP 1 Score: 624 bits (1608), Expect = 1.770e-214
Identity = 343/647 (53.01%), Postives = 444/647 (68.62%), Query Frame = 1
Query:    1 MDLVSFFAGRSEVLRVAPRHRIGLLNAAARANIQSATVTSSPLTDAGLDGTGEVIQVIDTGLDETSCYFVDEDGEEIAHGHYFEELG-----FTSGSD----VYAPFTGGDFSYDLNRRKIIQYINLVKSDSEPGQYGDYFTTSSGRRFAWLSAADFEQDEATGHGTHTAGSAAGATLNAPAETVTCSGSDD-LGCVGGCINPVSPTDDLLSFSQFLYFDLDRLCPSFDCGGYGEEVCLGDDVDKTLTEHGGIAQGAKLAIFDIFYDDFGLGSYAGNGLWEACLEAGCKIHSNSYGGDNVCEIGAADVEYDDFMYNHPENLLIFAAGNDGDLDDGREVCTIGSPAIAKNVLAIGSTSSGKTRLTLTGSDGEARTGSNGVADIDTVSYFSSYGPTQDNRIKPELVAPGDLIYSAASDGTDSHSCRLWAHHGTSMSCPIVAGAAAMVRQYFMDDNFYATDVITRGLCDDGFVCESFSPSSATVKALLINSANLMGGSSEPNFSRGFGRVHMEAGMPLGGDGDLVVFVADAANTAISARTTQEYLFHVDGNAGLDLRATISWIDPASTTFSAKQLVHDLDLTVTSPIGTTHTMWSTGVTDVYNVNERVIIDAADVE----SGTWTISVWANELGT-DVQRYSLVVNGAIS 1896
            M LVSFFA R EVL+V   +R   LNAAARA IQSA+V S+PLTDAGLDG+GEVIQ+ID G++ET+C+    DG E+ HG+YF+ +      F S S+      A FTGGDF YD +RRK+IQYI+L+  D+  G       +SSG  F  +SA  F  D+  GHGTHTA + AG+T+++PAE V+C+ + + +GC GGCI   S       + +    D++RLCP+F C G   + CL DD   TL+EHGG+AQGAK+A  DIFY D+  G  AGNGLWE C +AGCKIHSNSYG D  C++ A DV YD++MY + E+LL+F+AGN G   D R+ CTI SP IAKNVL +GSTSSG TRL+ T  DG      + ++ ID VS FS YG T+D RIKPE+VAPGD+IYSA+ +G +S SC L A+ GTS S  + +GAAAMVRQYF D +FY  DV +RG CD GF C+SFSP + TVKA+LINSAN+MGG +EP+  RGFGR+H+EAGMPLGG GD+V+FVAD+++  +S+    ++ F+VD +AGL+LRAT+SW DPA+++ S  QLV+DLDL V +P GT + MW     D  NVNERVI+ A  V     +  W + V   +    D   +SLVV GAIS
Sbjct:    5 MGLVSFFASRHEVLKVTGWNRKVNLNAAARATIQSASVDSTPLTDAGLDGSGEVIQIIDAGVNETTCFLEHGDGTEVEHGYYFDFVASSNPSFDSSSESRSMFKAEFTGGDFFYDSDRRKVIQYIDLINPDTGDG-------SSSGMPF--VSADSFVSDDDLGHGTHTATTVAGSTISSPAELVSCADNGEVIGCAGGCIIESSTGSTEADYGE----DINRLCPAFGCSG---DQCLPDDTANTLSEHGGMAQGAKIAAIDIFYGDYSYGDLAGNGLWETCADAGCKIHSNSYGVDLRCQLTALDVLYDEYMYENQEHLLLFSAGNTGWTTD-RDTCTIDSPGIAKNVLTVGSTSSGVTRLSTTDLDGRGYADGDELSTIDVVSEFSGYGFTEDGRIKPEVVAPGDMIYSASGNGGNS-SCELIAYAGTSFSTAVASGAAAMVRQYFRDSSFYGADVESRGFCDQGFTCDSFSPMATTVKAMLINSANVMGGGNEPDSERGFGRIHLEAGMPLGGAGDMVLFVADSSDHEVSSNGKLKFNFNVDPDAGLELRATLSWSDPAASSLSGDQLVNDLDLRVYAPDGTRYCMWDDNCWDTSNVNERVIVPAEVVAQFSATDEWEVRVRGRDFTVGDTVSFSLVVTGAIS 633          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10195.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K229_9PHAE6.350e-27363.59Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]
D8LNG4_ECTSI2.890e-27260.75Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JQT4_9PHAE1.450e-26360.39Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A6H5K365_9PHAE4.990e-25159.88Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LNG6_ECTSI9.560e-24859.84Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A2I6U1R2_SACJA5.170e-22858.35Subtilisin (Fragment) n=1 Tax=Saccharina japonica ... [more]
A0A6H5JKA8_9PHAE2.760e-22752.71Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A2I6U1S5_SACJA2.650e-22155.71Subtilisin n=1 Tax=Saccharina japonica TaxID=88149... [more]
A0A2I6U1Q9_SACJA3.020e-21755.68Subtilisin n=1 Tax=Saccharina japonica TaxID=88149... [more]
A0A6H5L2G3_9PHAE1.770e-21453.01Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10195contigA-nodosum_M_contig10195:2316..6126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNG5
PFAMsPeptidase_S8
Model size1908
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.2e-266
EggNOG OGsCOG1404@1|root,KOG1114@2759|Eukaryota
Descriptiontripeptidyl-peptidase activity
Cds size1908
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10195.1.1prot_A-nodosum_M_contig10195.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10195 2316..6126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866379.7671545-CDS-A-nodosum_M_contig10195:2315..24831680866379.7671545-CDS-A-nodosum_M_contig10195:2315..2483Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10195 2316..2483 +
1680866379.776907-CDS-A-nodosum_M_contig10195:2843..30081680866379.776907-CDS-A-nodosum_M_contig10195:2843..3008Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10195 2844..3008 +
1680866379.7874408-CDS-A-nodosum_M_contig10195:3360..39451680866379.7874408-CDS-A-nodosum_M_contig10195:3360..3945Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10195 3361..3945 +
1680866379.7954729-CDS-A-nodosum_M_contig10195:4318..45971680866379.7954729-CDS-A-nodosum_M_contig10195:4318..4597Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10195 4319..4597 +
1680866379.8039355-CDS-A-nodosum_M_contig10195:4829..49341680866379.8039355-CDS-A-nodosum_M_contig10195:4829..4934Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10195 4830..4934 +
1680866379.812698-CDS-A-nodosum_M_contig10195:5233..53471680866379.812698-CDS-A-nodosum_M_contig10195:5233..5347Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10195 5234..5347 +
1680866379.8216424-CDS-A-nodosum_M_contig10195:5634..61261680866379.8216424-CDS-A-nodosum_M_contig10195:5634..6126Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10195 5635..6126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10195.1.1

>prot_A-nodosum_M_contig10195.1.1 ID=prot_A-nodosum_M_contig10195.1.1|Name=mRNA_A-nodosum_M_contig10195.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=636bp
MDLVSFFAGRSEVLRVAPRHRIGLLNAAARANIQSATVTSSPLTDAGLDG
TGEVIQVIDTGLDETSCYFVDEDGEEIAHGHYFEELGFTSGSDVYAPFTG
GDFSYDLNRRKIIQYINLVKSDSEPGQYGDYFTTSSGRRFAWLSAADFEQ
DEATGHGTHTAGSAAGATLNAPAETVTCSGSDDLGCVGGCINPVSPTDDL
LSFSQFLYFDLDRLCPSFDCGGYGEEVCLGDDVDKTLTEHGGIAQGAKLA
IFDIFYDDFGLGSYAGNGLWEACLEAGCKIHSNSYGGDNVCEIGAADVEY
DDFMYNHPENLLIFAAGNDGDLDDGREVCTIGSPAIAKNVLAIGSTSSGK
TRLTLTGSDGEARTGSNGVADIDTVSYFSSYGPTQDNRIKPELVAPGDLI
YSAASDGTDSHSCRLWAHHGTSMSCPIVAGAAAMVRQYFMDDNFYATDVI
TRGLCDDGFVCESFSPSSATVKALLINSANLMGGSSEPNFSRGFGRVHME
AGMPLGGDGDLVVFVADAANTAISARTTQEYLFHVDGNAGLDLRATISWI
DPASTTFSAKQLVHDLDLTVTSPIGTTHTMWSTGVTDVYNVNERVIIDAA
DVESGTWTISVWANELGTDVQRYSLVVNGAISSAN*
back to top

mRNA from alignment at A-nodosum_M_contig10195:2316..6126+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10195.1.1 ID=mRNA_A-nodosum_M_contig10195.1.1|Name=mRNA_A-nodosum_M_contig10195.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3811bp|location=Sequence derived from alignment at A-nodosum_M_contig10195:2316..6126+ (Ascophyllum nodosum dioecious)
ATGGATCTCGTATCTTTCTTCGCGGGCAGGTCAGAGGTCCTCCGGGTCGC ACCGAGACATCGGATTGGTCTCCTCAACGCCGCGGCTAGGGCAAATATTC AATCAGCGACGGTAACGTCAAGTCCCCTAACTGATGCAGGCTTGGATGGC ACGGGCGAGGTCATCCAGGTAAGAGCTGTTTCGCTCGAACCAACCTGCTG TCAAGAATTTGACACTCTTCGCCAAGATTGTTATAAGCGTCAAGGCGAAA CACCTAACAAAAATGTTGTTTCAGCTGTACATCTAAAGGGGCACTATCTA CAGCAACTTAGGCACATCATGCCCACCAGGAACAAGGAATAAGTGACTTG CACTCGTACGGGGGCTGTTCGATCCACCTGATCCAACTCACGGTGGCTTG TGTTCACCATGATGGGAGTGAAATCCTGCTGCATGATGGTGATGAGAAGG ATGAGTAAGACGTTTGACGCTCCAACGAGCAACACATCCCCTCATCCCAC ATTTGGAATAACACGTATGTTTTTGCAGGTGATCGACACCGGGTTGGATG AGACGTCCTGTTATTTTGTGGACGAGGATGGCGAGGAGATTGCGCACGGA CATTACTTCGAGGAGTTGGGATTTACGAGCGGCTCCGACGTCTATGCGCC TTTCACTGGTGGGGATTTTTCGTACGACCTCAACAGGCGAAAGGTGAGGA GAACCTATGCTCCTCGTATAACCTGGGCTTGACGCTCTGCCGAGCAAGTG AGATTCTGCGCTTAGCATTTGGTCGTTGCTTATACGTAATCGTCTTGAAT AGTATCCATGACGTGTATTTATTGAAAAAACACAATATCATTAACTCCCC TACTATACTTGCTCTCCATTCCACACGAAGCTCTAGATGGAAATCGAGGG GACTCGTACCGAAGGATAACTAGATATTATGTACGCTCTATCCAGAGAAA GTCGTTCTGAAACATTTTTTGAACAGATTGTATCCGAACGCCATCGTGAC CTCAAAACCTGCTCTTCATTGTGCGTTGACGTATCGATTTTCCAGATCAT TCAGTACATCAACCTCGTGAAGTCAGACTCCGAGCCAGGTCAATATGGAG ACTACTTCACAACCTCTTCAGGCAGACGATTTGCGTGGCTCAGTGCCGCG GATTTTGAACAAGACGAGGCGACAGGTCATGGAACCCATACAGCTGGGAG TGCAGCTGGTGCAACGCTTAACGCCCCCGCGGAGACGGTAACTTGCTCCG GTTCAGATGACTTAGGTTGTGTTGGAGGGTGTATAAATCCTGTTTCACCC ACTGATGACCTTTTGAGTTTTTCCCAGTTTTTGTACTTCGACCTCGATCG GCTTTGCCCGAGCTTCGATTGTGGCGGATACGGTGAGGAGGTGTGCCTAG GTGATGACGTCGACAAGACCCTCACGGAGCACGGTGGAATAGCTCAGGGG GCAAAGCTCGCCATCTTCGACATATTTTACGACGATTTCGGTTTAGGCTC GTACGCTGGAAATGGATTATGGGAGGCATGCTTGGAGGCTGGGTGTAAGA TTCACTCGAACTCGTACGGCGGGGACAATGTGTGCGAGATAGGGGCGGCG GACGTCGAATACGACGACTTCATGTACAATGTAAGTGCTCTAACTCATGT ATCGTCACCTTTAGCCTGAACCACCAGTCATATGGCTTGGATATCACGCG CTATCAAAGCAGTCGGACACACTTCAAAATATCTTTTCAGCTCATAGGAT GACACTTTGCAACGCGGGCAGAAGCATCTTACCGGAGCGTAGCACTAGAC TAACCTGATTCGTAAGGTAGGAAATCTCTAAGTATCGCCTGCAACGCATG CAGTACTTCACCTATTTTGTCATAGAAAGTCAGGCGTTTCCAGGAGTAGA TTGTCAGAGACATCTTTGTGCAGGCCATTTGGATCCTCACTCCAAATCGG TTCCATGACTTCCTGCTCGGATTGAATACGTTTCGCTTTCGTTATCCGCC CAGCACCCGGAAAACCTGCTCATATTTGCGGCCGGCAATGACGGCGATCT CGATGACGGCCGGGAAGTGTGTACCATTGGAAGTCCCGCGATTGCCAAGA ATGTACTTGCAATTGGTTCCACGTCTTCGGGGAAGACGCGCCTAACTTTA ACCGGATCCGACGGCGAAGCGCGCACAGGTTCCAACGGAGTGGCCGATAT TGATACTGTATCTTACTTCAGCTCCTACGGTCCTACTCAAGACAATCGCA TTAAGCCGGAGCTTGTAGCCCCCGGCGACTTGGTACGTGCGTAGACTCGT TAATGTAACTACATTATCGTATTGACTTATTATCAAATATACAGATACAG GAATGAAGGCTGTTATTCTGTCAACTTGAGAAAATCACAGCTGTAAGTGC AATGTCGCAGTGCTTGTTGGGGGGATCTCAGTGAGAGCGTGCTATGTGTT TCGTGGTTGATAAGCCGGTACCCTTCCGTACCCACCTTCCTCTCTCGCGT GTATGCGGCGGTAGATCTATTCCGCAGCCTCTGATGGGACCGATTCTCAC TCCTGCAGATTGTGGGCACATCATGGGACTAGCATGTCTTGCCCAATCGT TGCAGGAGCAGCAGCTATGGTAAGCCAGTAGATCCTCTTACACATAGACA AAGTCTGATGAGGCGTCAAAGATACAGTCGATTAAAAGCCAAATCGATGG CATGGTTTTCGAAACTGCAAACGTGTACGCCTCGCGTCGGCTCGGTGCTT CAGGTCTGCCTTAGTACTGATGTCTTGTATTTTTCAGCGTTCCTAATCGG TACTAGGTGATTGACAAATTGCTGAAAAAGTCATTACCACATAGATTTGG AATCACTTACCGCTTCCCTGACACATACATACTATTGACTATACTTATTT TGCTAACTCGACCTGCAGGTACGGCAGTACTTCATGGACGACAACTTCTA CGCCACAGATGTAATCACGAGAGGATTATGCGACGACGGCTTTGTGTGTG AAAGCTTTTCGCCCTCTTCGGCAACTGTGAAGGTGAGAGCGCCTCCGAGG TGCCTAATGTACGCCCCATACAAAACACGTCGTATTTGCTTCTGCTGCAG CTATCCGACAATGAATATACCTGACTAGTACGCAGTCACACAACAGGCCA TCCCATTTTGCAAATACTCGAGGTTAAAAATCAGTCAACAACCTCGGCGC TTTGGACGATACTCTTGGTAGGTGATACATAGGTTTTAAGTTAGTAAGAA TTGGTCGCCGATCAGTCAGAAGATGGAGGAACCCTGAATGAAGGAGGTTT TCAATGTTTACATTCGCAGGCGTTACTCATCAACAGTGCAAACCTGATGG GAGGAAGCTCGGAACCCAACTTCTCCCGAGGGTTTGGGCGTGTCCACATG GAGGCAGGGATGCCTCTGGGTGGAGATGGAGATCTGGTAGTTTTTGTAGC GGACGCTGCCAACACCGCCATTTCCGCAAGAACGACGCAAGAATATCTCT TTCATGTTGATGGCAATGCGGGTTTAGATCTGCGCGCCACAATCTCGTGG ATCGATCCCGCCTCCACAACTTTCTCGGCGAAACAGCTGGTTCACGATTT AGACCTGACTGTGACCTCCCCAATTGGAACGACTCATACAATGTGGTCGA CGGGTGTAACTGACGTCTATAATGTCAACGAGAGGGTCATCATTGATGCA GCGGATGTTGAGAGCGGGACATGGACAATTTCGGTTTGGGCCAACGAACT TGGCACTGATGTCCAAAGGTATTCGCTTGTCGTTAACGGAGCAATTAGCT CTGCAAACTAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10195:2316..6126+

>mRNA_A-nodosum_M_contig10195.1.1 ID=mRNA_A-nodosum_M_contig10195.1.1|Name=mRNA_A-nodosum_M_contig10195.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1908bp|location=Sequence derived from alignment at A-nodosum_M_contig10195:2316..6126+ (Ascophyllum nodosum dioecious)
ATGGATCTCGTATCTTTCTTCGCGGGCAGGTCAGAGGTCCTCCGGGTCGC
ACCGAGACATCGGATTGGTCTCCTCAACGCCGCGGCTAGGGCAAATATTC
AATCAGCGACGGTAACGTCAAGTCCCCTAACTGATGCAGGCTTGGATGGC
ACGGGCGAGGTCATCCAGGTGATCGACACCGGGTTGGATGAGACGTCCTG
TTATTTTGTGGACGAGGATGGCGAGGAGATTGCGCACGGACATTACTTCG
AGGAGTTGGGATTTACGAGCGGCTCCGACGTCTATGCGCCTTTCACTGGT
GGGGATTTTTCGTACGACCTCAACAGGCGAAAGATCATTCAGTACATCAA
CCTCGTGAAGTCAGACTCCGAGCCAGGTCAATATGGAGACTACTTCACAA
CCTCTTCAGGCAGACGATTTGCGTGGCTCAGTGCCGCGGATTTTGAACAA
GACGAGGCGACAGGTCATGGAACCCATACAGCTGGGAGTGCAGCTGGTGC
AACGCTTAACGCCCCCGCGGAGACGGTAACTTGCTCCGGTTCAGATGACT
TAGGTTGTGTTGGAGGGTGTATAAATCCTGTTTCACCCACTGATGACCTT
TTGAGTTTTTCCCAGTTTTTGTACTTCGACCTCGATCGGCTTTGCCCGAG
CTTCGATTGTGGCGGATACGGTGAGGAGGTGTGCCTAGGTGATGACGTCG
ACAAGACCCTCACGGAGCACGGTGGAATAGCTCAGGGGGCAAAGCTCGCC
ATCTTCGACATATTTTACGACGATTTCGGTTTAGGCTCGTACGCTGGAAA
TGGATTATGGGAGGCATGCTTGGAGGCTGGGTGTAAGATTCACTCGAACT
CGTACGGCGGGGACAATGTGTGCGAGATAGGGGCGGCGGACGTCGAATAC
GACGACTTCATGTACAATCACCCGGAAAACCTGCTCATATTTGCGGCCGG
CAATGACGGCGATCTCGATGACGGCCGGGAAGTGTGTACCATTGGAAGTC
CCGCGATTGCCAAGAATGTACTTGCAATTGGTTCCACGTCTTCGGGGAAG
ACGCGCCTAACTTTAACCGGATCCGACGGCGAAGCGCGCACAGGTTCCAA
CGGAGTGGCCGATATTGATACTGTATCTTACTTCAGCTCCTACGGTCCTA
CTCAAGACAATCGCATTAAGCCGGAGCTTGTAGCCCCCGGCGACTTGATC
TATTCCGCAGCCTCTGATGGGACCGATTCTCACTCCTGCAGATTGTGGGC
ACATCATGGGACTAGCATGTCTTGCCCAATCGTTGCAGGAGCAGCAGCTA
TGGTACGGCAGTACTTCATGGACGACAACTTCTACGCCACAGATGTAATC
ACGAGAGGATTATGCGACGACGGCTTTGTGTGTGAAAGCTTTTCGCCCTC
TTCGGCAACTGTGAAGGCGTTACTCATCAACAGTGCAAACCTGATGGGAG
GAAGCTCGGAACCCAACTTCTCCCGAGGGTTTGGGCGTGTCCACATGGAG
GCAGGGATGCCTCTGGGTGGAGATGGAGATCTGGTAGTTTTTGTAGCGGA
CGCTGCCAACACCGCCATTTCCGCAAGAACGACGCAAGAATATCTCTTTC
ATGTTGATGGCAATGCGGGTTTAGATCTGCGCGCCACAATCTCGTGGATC
GATCCCGCCTCCACAACTTTCTCGGCGAAACAGCTGGTTCACGATTTAGA
CCTGACTGTGACCTCCCCAATTGGAACGACTCATACAATGTGGTCGACGG
GTGTAACTGACGTCTATAATGTCAACGAGAGGGTCATCATTGATGCAGCG
GATGTTGAGAGCGGGACATGGACAATTTCGGTTTGGGCCAACGAACTTGG
CACTGATGTCCAAAGGTATTCGCTTGTCGTTAACGGAGCAATTAGCTCTG
CAAACTAA
back to top