mRNA_A-nodosum_M_contig1016.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1016.4.1
Unique NamemRNA_A-nodosum_M_contig1016.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 6.050e-79
Identity = 175/489 (35.79%), Postives = 257/489 (52.56%), Query Frame = 2
Query:  155 IPEMENLFEEATVNAVIKKPNPQSAAGLSGLRYSHLQAA-LSDELVEDLAAFATLVFT-SRVLPHGFWTLKASANLCALGQKARPVACGDVLRRVIGAVFCSRYGRKLADYFQSWGPCGVAISGGVEIMGLTATLGFEEGYTTLSYDGANVFNSICHLRFLPALAEIVPLVVPYASNLYIREPPKL---------PVYIRWR--RFGSS*VSAGSTVRMLSRLFLLHRRLTEDTENVQGQSTGTRSESGFVHR*HCSHSTTGTLPRHGSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582
            + E +  FE   +   +KK NPQSA G  GLR+S+LQA  +SD   E LA F+  VF     LP  FW L  SANL ALG+K RP+A G VLRR+I   FC +Y   +A+ F++    G  + GGVEI+  TA L  ++G T LS+DG N +NS+     LPA+A   P +V Y  N+Y R   KL          V +  R  + G +    G  V +L  +   + +       + G     ++           H   G      +I  +T+W+QERL  +GI L+  KS+ L   G+    L  +++    + GL+V   GM VVG+PVGT  F+RNF+ ++  G+P + +  L  ++D QAS++ L LS   RL HLLRT+ PSIT  AA  ++  + WA+  I++    A +  +PT +EV  DPT  +   + +     Q HL +REGGLG+TS+  I+ +A++    LV   S    +G T
Sbjct:  113 VAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQA-----------HLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG-KMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 589          
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 1.380e-78
Identity = 176/489 (35.99%), Postives = 258/489 (52.76%), Query Frame = 2
Query:  155 IPEMENLFEEATVNAVIKKPNPQSAAGLSGLRYSHLQAA-LSDELVEDLAAFATLVFT-SRVLPHGFWTLKASANLCALGQKARPVACGDVLRRVIGAVFCSRYGRKLADYFQSWGPCGVAISGGVEIMGLTATLGFEEGYTTLSYDGANVFNSICHLRFLPALAEIVPLVVPYASNLYIREPPKL---------PVYIRWR--RFGSS*VSAGSTVRMLSRLFLLHRRLTEDTENVQGQSTGTRSESGFVHR*HCSHSTTGTLPRHGSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582
            + E +  FE   +   +KK NPQSA G  GLR+S+LQA  +SD   E LA F+  VF     LP  FW L  SANL ALG+K RP+A G VLRR+I   FC +Y   +A+ F++    G  + GGVEI+  TA L  ++G T LS+DG N +NS+     LPA+A   P +V Y  N+Y R   KL          V +  R  + G +    G  V +L  +   + +       + G     ++           H   G      +I  +T+W+QERL  +GI L+  KS+ L   G+    L  +++    + GL+VA  GM VVG+PVGT  F+RNF+ ++  G+P + +  L  ++D QAS++ L LS   RL HLLRT+ PSIT  AA  ++  + WA+  I++    A +  +PT +EV  DPT  +   + +     Q HL +REGGLG+TS+  I+ +A++    LV   S    +G T
Sbjct:  113 VAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQA-----------HLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG-KMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 589          
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 277 bits (708), Expect = 1.790e-77
Identity = 167/479 (34.86%), Postives = 256/479 (53.44%), Query Frame = 2
Query:  155 IPEMENLFEEATVNAVIKKPNPQSAAGLSGLRYSHLQAALSDELVEDLAAFATLVFTSRVLPHGFWTLKASANLCALGQKARPVACGDVLRRVIGAVFCSRYGRKLADYFQSWGPCGVAISGGVEIMGLTATLGFEEGYTTLSYDGANVFNSICHLRFLPALAEIVPLVVPYASNLYIREPPKLPVYIRWRRFGSS*VSAGSTVRM---------LSRLFLLHRRLTEDTENVQGQSTGTRSESGFVHR*HCSHSTTGTLPRH-----GSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVL 1549
            I  +E  F   TV A I++ NPQ + G SGLR+S LQ++L+ EL E +A   +++F    LP  FW L  SANL A+G K RP+A GD+ RR++G V C +YG  LA++F+  G  GVA+ GG E++   A L  ++G   L+YD  N FNS+     LPALA+++P ++PYA+N+Y REPPKL   +     G + + + + V+           + L  L R    +   V  Q      +   +            LP++      + E +T W+Q  +   G++LNR KS+ L   G   K   E+ R   + T L VA  GMR+VGVPVG   + +    ++  GEPT  ++ +  ++D QAS + L  SA++RL  LLR++ P +T +AA++++  VE  L +I+   +  S  G   P E   + +    +  L    +RQ  L +REGGLG+ S+  I   A++G   LVL
Sbjct: 1151 IEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKL---LYKTDSGMAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVL------------LPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPPDLTKEAASEFDKSVEQTLETIL---NGPSQPGEHAPHEPTEENSPSLPRLNLSPVGIRQARLPVREGGLGIPSTVDISGPAFIGGQALVL 1611          
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 3.040e-66
Identity = 156/449 (34.74%), Postives = 233/449 (51.89%), Query Frame = 2
Query:  272 LSDELVEDLAAFATLVFT-SRVLPHGFWTLKASANLCALGQKARPVACGDVLRRVIGAVFCSRYGRKLADYFQSWGPCGVAISGGVEIMGLTATLGFEEGYTTLSYDGANVFNSICHLRFLPALAEIVPLVVPYASNLYIREPPKL---------PVYIRWR--RFGSS*VSAGSTVRMLSRLFLLHRRLTEDTENVQGQSTGTRSESGFVHR*HCSHSTTGTLPRHGSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582
            +SD   E LA F+  VF     LP   W L  SANL ALG+K RP+A G VLRR+I   F  +Y   +A+ F++    G  + GGVEI+  TA L  ++G T LS+DG N +NS+     LPA+A + P +V Y  N+Y R   KL          V +  R  + G +    G  V +L  +   + +       + G     ++           H   G      +I  +T+W+QERL  +GI L+  KS+ L   G+    L  +++    + GL+VA  GM VVG+PVGT  F+RNF+ ++  G+P + +  L  ++D QAS++ L LS   RL HLLRT+ PSIT  AA  ++  + WA+  I++    A +  +PT +EV  DPT  +   + +     Q HL +REGGLG+TS+  I+ +A++    LV   S    +G T
Sbjct:    1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQA-----------HLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG-KMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 437          
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5KKJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ7_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 3.660e-35
Identity = 85/233 (36.48%), Postives = 132/233 (56.65%), Query Frame = 2
Query:  884 SHSTTGTLPRHGSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582
            +H   G      +I  +T+W+QERL  +GI L+  KS+ L   G+    L  +++    + GL+VA  GM VVG+PVGT  F+RNF+ ++  G+P + +  L  ++D QAS++ L LS   RL  LLRT+ PSIT  AA  ++  + WA+  I++    A +  +PT +EV  DPT  +   + +     Q HL +REGGLG+TS+  I+ +A++    LV   S    +G T
Sbjct:   24 AHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFQLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG-KMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 255          
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 9.650e-32
Identity = 138/471 (29.30%), Postives = 213/471 (45.22%), Query Frame = 2
Query:  167 ENLFEEATVNAVIKKPNPQSAAGLSGLRYSHLQAALSDELV-EDLAA-----FATLVFTSRVLPHGFWTLKASANLCALGQKARPVACGDVLRRVIGAVFCSRYGRKLADYFQSWGPCGVAISGGVEIMGLTATLGFEEGYTTLSYDGANVFNSICHLRFLPALAEIVPLVVPYASNLYIREPPKLPVYI-----RWRRFGSS*VSAGSTVR--MLSRLFLLHRRLTEDTENVQGQSTGTRSESGFVHR*HCSHSTTGTLPRHGSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHL-AEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVN-GEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQ-TQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLG 1531
            E  F+   +  VI   +  S AG  G R+SHL++  + ++  ED        +  LV      P  FWTL   ++L ALG+K RPV  G   RR+I A    ++  KL + F+     GVA++GGVE + + A L  + G   +  D +N FN+      +   A+ +P +V Y +  Y  E P   VY      R     +S V  G  +   + S + +      +D     G +     +   +H    +           S++ +TD + E L   GI +NR KS AL      P H+  ++QR   +  GLTVA +G+ VVGVP+GT ++ R F  +V+  G   K  R+L  M D Q +     LS   R  ++ R + P++T +A    +  V+WAL + +         G  + EE       CQ T   LR     QT L    GGLG++S+   + +A LG
Sbjct:  535 EEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGREDFCGAMSSLWRRLVNDPNTFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCY-DEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLKDLTEE---------SVQAMTDLVDE-LAEVGIVVNRAKSSAL----PPPGHMITDQQRRLLEGVGLTVAGEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERGIDPTLTKEACERLDNMVQWALETGM------GIEGTESEEEFFQQG--CQDTDLKLRPYQRAQTQLSTGAGGLGVSSAVMRRFSASLG 982          
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5L2W9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W9_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.680e-31
Identity = 79/217 (36.41%), Postives = 123/217 (56.68%), Query Frame = 2
Query:  932 LTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582
            +T+W+QER   +GI L+  KS+ L   G+    L  +++    + GL+VA  GM VVG+PVGT  F+RNF+ ++  G+P + +  L  ++D QAS++ L LS   RL HLLRT+ PSIT  AA  ++  + W +  I++    A++  + T +E   DPT  +           Q HL +REGGLG+TS+  I+ +A++    LV   S    +G T
Sbjct:    7 VTNWIQERFSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWTMRKIVLG-KMANSMRISTVKEERADPTKSEEVDSFNATARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 222          
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5KFL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL6_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 8.090e-27
Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 2
Query: 1091 MRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582
            M VVG+PVGT  F+RNF+ ++  G+P + +  L  ++D QAS++ L LS   RL HLLRT+ PSIT  AA  ++  + WA+  I++    A +  +PT +EV  DPT  +   + +     Q HL +REGGLG+TS+  I+ +A++    LV   S    +G T
Sbjct:    1 MPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG-KMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 163          
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A836CGN9_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGN9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.840e-24
Identity = 126/490 (25.71%), Postives = 195/490 (39.80%), Query Frame = 2
Query:  176 FEEATVNAVIKKPNPQSAAGLSGLRYSHLQAALSD-----ELVEDLAAFATLVFTSRV-LPHGFWTLKASANLCALGQ-------KARPVACGDVLRRVIGAVFCSRYGRKLADYFQSWGPCGVAISGGVEIMGLTATLGFEEGYTTLSYDGANVFNSICHLRFLPALAEIVPLVVPYASNLYIREPPKL---------PVYIRWRRFGSS*VSA-----GSTVRMLSRLFLLHRRLTEDTENVQGQSTGTRSESGFVHR*HCSHSTTGTLPRHGSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLA-EEQRTARDETGLTVA-------RQGMRVVGVPVGTVHFKRNFLQEVVN--GEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYL--RHEVLRQTHLRIREGGLGLTSSNSIKSAAYL 1528
             E  TV  +I++ +P S AGLSGLRYSHLQ AL       E    L  +   V      LP  FW L  +  L  L +       K RP+ CG+VL+R+  +V+ +     LA+  +  G  GVA+S G E   +   L +E G+     D  N FN +  L     +A  +P  + Y    Y+R  P+L          + +  R F     +A     G+  + L R             N    +   R   G  +    +  T         I+ +   L++     G+ LN  KS+AL     G  H+  + +R    + G+ +         +G  ++GVPVG   F   +L+      G   +       +   +A F  L      R+ + LRT+  + T  AA +++   +W L           + GL  P +            +L  R   L+Q  L  R GGLG+TS+  I  AAY+
Sbjct:  320 IEPETVAKLIQRASPYSGAGLSGLRYSHLQDALRTSWGRHEFAAVLTRWLQTVMREAARLPDAFWQLHGAGRLTPLAEQQEDGTAKQRPIVCGEVLQRLCTSVYVADRKDFLAELLEPDGQYGVAVSAGAEKAAMAGKLAYELGHWQFMLDLKNAFNMVFVLAAAEWVAAQLPDFLDYFIGTYVRTRPRLLFQHVDGSTRIIMSQRGFKQGDPAAPMLFCGAIAQCLKRF------------NEAAAAQRARRRMG-AYMDDANVRTGARTLTQDDIQAVAQ-LKQHFAEVGLELNLTKSRAL----PGRGHVVTDHERQLLQQLGVQLVGDTDENQNRGAVLLGVPVGHSSFVDAWLRREAGAGGAGARFAERCARLTSPRAMFRLLRYCVVPRMTYCLRTIPTTQTAPAAKEWDRVTQWVL---------EHSMGLQPPGQTWRQFEQSGAHFHLAARGPALQQARLPTRHGGLGITSACDIADAAYV 782          
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5KED8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED8_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.540e-23
Identity = 67/187 (35.83%), Postives = 104/187 (55.61%), Query Frame = 2
Query: 1031 LAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLR---IREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582
            L  +++    + GL VA  GM VVG+PVGT  F+RNF+ +   G+P   +  L  ++D QAS++ L LS   RL HLLRT+ PSI   AA +++  + WA+  I++    A +  + T +EV  +PT  +   + +     Q HL    +REGGLG+TS+  I+ +A++    LV   S    +G T
Sbjct:    4 LTNDEQQQLTKIGLPVAEGGMSVVGIPVGTEEFQRNFVSKFAGGDPADLILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSIANSAARNHDN-LMWAMSKIVLG-KMADSMRISTEKEVRANPTKREEVEFFKGTARAQVHLPXLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 188          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JCM0_9PHAE6.050e-7935.79Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE1.380e-7835.99Reverse transcriptase domain-containing protein n=... [more]
A0A6P0N5L4_9CYAN1.790e-7734.86Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5K1H0_9PHAE3.040e-6634.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKJ7_9PHAE3.660e-3536.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE9.650e-3229.30Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L2W9_9PHAE2.680e-3136.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFL6_9PHAE8.090e-2739.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGN9_9STRA3.840e-2425.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KED8_9PHAE2.540e-2335.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1016contigA-nodosum_M_contig1016:6323..7987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400682.PAC_15702057
PFAMsRVT_1,zf-RVT
Model size1665
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.86e-05
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size582
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866375.4054484-UTR-A-nodosum_M_contig1016:6322..72421680866375.4054484-UTR-A-nodosum_M_contig1016:6322..7242Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1016 6323..7242 -
1680866375.4284236-UTR-A-nodosum_M_contig1016:7824..79871680866375.4284236-UTR-A-nodosum_M_contig1016:7824..7987Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1016 7825..7987 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866375.414644-CDS-A-nodosum_M_contig1016:7242..78241680866375.414644-CDS-A-nodosum_M_contig1016:7242..7824Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1016 7243..7824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1016.4.1prot_A-nodosum_M_contig1016.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1016 7243..7824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1016.4.1

>prot_A-nodosum_M_contig1016.4.1 ID=prot_A-nodosum_M_contig1016.4.1|Name=mRNA_A-nodosum_M_contig1016.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=194bp
MENLFEEATVNAVIKKPNPQSAAGLSGLRYSHLQAALSDELVEDLAAFAT
LVFTSRVLPHGFWTLKASANLCALGQKARPVACGDVLRRVIGAVFCSRYG
RKLADYFQSWGPCGVAISGGVEIMGLTATLGFEEGYTTLSYDGANVFNSI
CHLRFLPALAEIVPLVVPYASNLYIREPPKLPVYIRWRRFGSS*
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mRNA from alignment at A-nodosum_M_contig1016:6323..7987-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1016.4.1 ID=mRNA_A-nodosum_M_contig1016.4.1|Name=mRNA_A-nodosum_M_contig1016.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1665bp|location=Sequence derived from alignment at A-nodosum_M_contig1016:6323..7987- (Ascophyllum nodosum dioecious)
ACTGGTAACGCTACGCAGCAAGCACACCGCAAAGAACCCTACAGCAATTA CCACTGGTAAGGCGCGGGTGGAACAACGTGCAGAAGTTACAGCAAATGGT GAGCAGGAGCAGCGGCCGAACGTGACAACTGGGCTATTGAACGCACAAGG CCAGATCCCGGAGATGGAGAACCTCTTTGAAGAGGCCACGGTGAACGCTG TCATCAAGAAACCCAACCCACAGAGCGCGGCAGGTCTGTCTGGACTACGC TACAGCCATCTGCAGGCTGCGCTTTCCGATGAACTGGTCGAGGATCTCGC AGCGTTTGCGACACTTGTCTTTACCAGCCGTGTTTTGCCCCACGGGTTTT GGACACTGAAGGCGAGCGCTAATCTTTGCGCGTTGGGGCAAAAGGCGAGA CCAGTGGCGTGCGGTGATGTATTGCGGAGAGTTATTGGCGCCGTTTTCTG CAGCCGATACGGCAGGAAGCTGGCAGATTACTTCCAGTCCTGGGGCCCGT GCGGCGTAGCAATTTCAGGTGGAGTAGAGATTATGGGGCTTACAGCAACA CTGGGTTTCGAAGAGGGTTACACCACTCTCTCGTACGACGGAGCAAATGT TTTCAACAGTATATGCCACCTCAGGTTCCTGCCAGCGCTAGCGGAAATCG TTCCCTTAGTGGTTCCCTACGCATCAAACCTGTACATACGAGAACCCCCA AAACTCCCTGTTTACATTAGATGGAGGAGGTTTGGAAGTAGTTGAGTCAG CGCGGGAAGTACAGTAAGGATGCTATCTAGGCTCTTTTTGCTACATCGCA GGCTCACTGAAGATACTGAAAACGTTCAAGGGCAATCCACCGGTACCAGG AGTGAGAGCGGTTTCGTTCATCGATGACATTGCAGTCATTCTACCACCGG AACTCTCCCTCGGCATGGCAGCATAGAGAAACTTACGGACTGGCTGCAAG AACGCCTAGGGGTAGAAGGCATATCGTTGAACCGCAGGAAATCGCAGGCC TTGCTATTATATGGAGTGGGGCCAAAACATCTGGCGGAAGAGCAGCGTAC GGCGAGGGATGAAACAGGGCTCACGGTGGCCCGACAGGGGATGAGGGTAG TGGGAGTACCCGTTGGAACAGTACACTTCAAGCGGAATTTCTTACAGGAG GTAGTTAATGGAGAGCCAACTAAACCTGTAAGGGTGCTTGTCCCGATGGA GGATGGCCAAGCGAGCTTTGAGAGCTTGCATCTATCTGCCTCTTCCCGCC TGCCCCACCTACTTCGCACAGTCCTGCCCTCCATCACGTACCAAGCTGCT GCAGATTACGAAGGTTGAGTGGAGTGGGCGTTGATGTCTATAATAATAGC TTGTGACGAAGCTTCCGCGGCAGGGTTACCAACCCCAGAGGAAGTAGTCC ACGATCCCACCGTGTGCCAAACTCAGACTTACCTGAGACATGAGGTCCTA CGGCAGACCCACCTGCGCATCCGAGAAGGCGGCCTTGGACTTACCAGCAG CAACTCCATCAAAAGTGCTGCCTACCTTGGTTGCCACACCTTGGTTCTGC TCGCATCGTCGCCACCTCCGTCCGGGGGAACCTTCCATCCCTTCTTGAAC GGCTGCCTGAGCGACCCATGGCATCAGCGCTCCTTCAAGAGCTGAAGACC GTCGCCACCGAAGTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1016:6323..7987-

>mRNA_A-nodosum_M_contig1016.4.1 ID=mRNA_A-nodosum_M_contig1016.4.1|Name=mRNA_A-nodosum_M_contig1016.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at A-nodosum_M_contig1016:6323..7987- (Ascophyllum nodosum dioecious)
ATGGAGAACCTCTTTGAAGAGGCCACGGTGAACGCTGTCATCAAGAAACC
CAACCCACAGAGCGCGGCAGGTCTGTCTGGACTACGCTACAGCCATCTGC
AGGCTGCGCTTTCCGATGAACTGGTCGAGGATCTCGCAGCGTTTGCGACA
CTTGTCTTTACCAGCCGTGTTTTGCCCCACGGGTTTTGGACACTGAAGGC
GAGCGCTAATCTTTGCGCGTTGGGGCAAAAGGCGAGACCAGTGGCGTGCG
GTGATGTATTGCGGAGAGTTATTGGCGCCGTTTTCTGCAGCCGATACGGC
AGGAAGCTGGCAGATTACTTCCAGTCCTGGGGCCCGTGCGGCGTAGCAAT
TTCAGGTGGAGTAGAGATTATGGGGCTTACAGCAACACTGGGTTTCGAAG
AGGGTTACACCACTCTCTCGTACGACGGAGCAAATGTTTTCAACAGTATA
TGCCACCTCAGGTTCCTGCCAGCGCTAGCGGAAATCGTTCCCTTAGTGGT
TCCCTACGCATCAAACCTGTACATACGAGAACCCCCAAAACTCCCTGTTT
ACATTAGATGGAGGAGGTTTGGAAGTAGTTGA
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