mRNA_A-nodosum_M_contig1015.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1015.12.1
Unique NamemRNA_A-nodosum_M_contig1015.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1015.12.1 vs. uniprot
Match: D7FNX7_ECTSI (TatD DNase domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX7_ECTSI)

HSP 1 Score: 378 bits (970), Expect = 1.770e-126
Identity = 192/269 (71.38%), Postives = 219/269 (81.41%), Query Frame = 2 
Query:   47 MFDCHAHLTDPSLRDRLDERLVEAEAAGVRGIVVVSESLDDALQVVELCARVNCDPQH--RIRLHPSLGLHPEKADLAALEGMLELIDAHADDIACVGEVGLDYSRHLIGEAGTEAAERAKEVQRQCFAKQARRADELGLPVNVHSRSAGHHAIRLLQDEGVKRAVFHAFDGKPKYAVEAAKAGYFFSVPPIVCRSRGFQSLVQAVPLESLLLETDSPALAPVKAETNEPKNLTVACEWVARLKNVPVADVVEVTNSNARRLFSRAFLR 847
            MFDCHAHLTD SL + L + L+EAEAAGV GIV VSESLDDA  VVELCA +N D     ++RLHPS+G+HPEKADL  ++ +LELID HAD I CVGEVGLD+SRHLIGE+G E AERAKEVQR+ F +QARRA ELGL VNVHSRSAGHHAI LLQ+EG+ RAV HAFDGKPKYAV+AAKAGYFFSVPPIVCRS GFQSLV+A+PLESL+LETDSPAL P K   N P NL+++ +W+A LK VP   V E T +NARRLF RAF R
Sbjct:    1 MFDCHAHLTDSSLAEGLQQTLLEAEAAGVTGIVAVSESLDDATPVVELCASINDDASRCRKLRLHPSIGMHPEKADLHKVDDVLELIDKHADTIVCVGEVGLDFSRHLIGESGGERAERAKEVQREVFRRQARRAKELGLAVNVHSRSAGHHAISLLQEEGITRAVLHAFDGKPKYAVQAAKAGYFFSVPPIVCRSPGFQSLVKALPLESLVLETDSPALGPEKGVRNVPGNLSISRDWIASLKGVPADVVAETTTANARRLFPRAFDR 269
[Close]
BLAST of mRNA_A-nodosum_M_contig1015.12.1 vs. uniprot
Match: A0A6H5KIS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS3_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 4.940e-119
Identity = 192/297 (64.65%), Postives = 219/297 (73.74%), Query Frame = 2 
Query:   47 MFDCHAHLTDPSLRDRLDERLVEAEAAGVRGIVVVSESLDDALQVVELCARVNCDPQH--RIRLHPSLGLHPEKADLAALEGMLELIDAHADDIACVGEVGLDYSRHLIGEAGTEAAERAKEVQRQCFAKQARRADELGLPVNVHSRSAGHHAIRLLQDEGVKRAVFHAFDGKPK----------------------------YAVEAAKAGYFFSVPPIVCRSRGFQSLVQAVPLESLLLETDSPALAPVKAETNEPKNLTVACEWVARLKNVPVADVVEVTNSNARRLFSRAFLR 847
            MFDCHAHLTD SL + L + L+EAEAAGV GIV VSESLDDA  VVELCA +N D     ++RLHPS+G+HPEKAD+  ++ +LELID HAD I CVGEVGLD+SRHLIGE+G E AERAKEVQR+ F +QARRA ELGL VNVHSRSAGHHAI LLQ+EG+ RAV HAFDGKPK                            YAV+AAKAGYFFSVPPIVCRS GFQSLV+A+PLESL+LETDSPAL P K   N P NL+V+ +W+A LK VP   V E T +NARRLF RAF R
Sbjct:   46 MFDCHAHLTDSSLAEGLHQTLLEAEAAGVTGIVAVSESLDDATPVVELCASINDDASRCRKLRLHPSIGMHPEKADVHKVDDVLELIDKHADTIVCVGEVGLDFSRHLIGESGGERAERAKEVQREVFRRQARRAKELGLAVNVHSRSAGHHAISLLQEEGITRAVLHAFDGKPKDNGLITAEIQQTFRVQEYLATAGGEKERYAVQAAKAGYFFSVPPIVCRSSGFQSLVKALPLESLVLETDSPALGPEKGVGNVPGNLSVSRDWIASLKGVPADVVAETTTANARRLFPRAFDR 342
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BLAST of mRNA_A-nodosum_M_contig1015.12.1 vs. uniprot
Match: A0A7S2UWP9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP9_9STRA)

HSP 1 Score: 229 bits (585), Expect = 1.890e-68
Identity = 123/263 (46.77%), Postives = 177/263 (67.30%), Query Frame = 2 
Query:   47 MFDCHAHLTDPSLRDRLDERLVEAEAAGVRGIVVVSESLDDALQVVELCARVNCDPQHRIRLHPSLGLHPEKADLAALEGMLELIDAHADDIACVGEVGLDYSRHLIGEAGTEAAERAKEVQRQCFAKQARRADELGLPVNVHSRSAGHHAIRLLQDEGVKRAVFHAFDGKPKYAVEA-AKAGYFFSVPPIVCRSRGFQSLVQAVPLESLLLETDSPALAPVKAETNEPKNLTVACEWVARLKNVPVADVVEVTNSNARRLFS 832
            +FDCHAH+TD    + L+  L    A GV+G+V VS  + D+ +V++L ++          + PS+GLHPE A+++ L  ++  I  + D +A VGEVGLDYS H++GE   EA ER K +QR+ F++Q  +A EL LP+NVHSR+AGHH + LL++ G  R V HAFDG+  YA  A +++GY+FSVPP + RS   Q LV+ +PL+ LLLE+DSPALAPVK E N P N+ V+CE +A++K V V +V  +T +NA +L +
Sbjct:   16 VFDCHAHMTDTEFSNDLENVLEMCNATGVQGLVCVSSGVHDSEKVLQLGSK-------HPSVIPSVGLHPEFANISDLPTIITQITQYHDQLASVGEVGLDYSPHILGEG--EAEER-KAIQREVFSQQVLKAVELDLPLNVHSRAAGHHTLDLLRELGATRVVMHAFDGRAHYAERAVSESGYYFSVPPCIVRSPQLQKLVRRLPLDHLLLESDSPALAPVKGERNCPSNIIVSCEEIAKIKQVSVQEVAAITYANAMKLLN 268
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BLAST of mRNA_A-nodosum_M_contig1015.12.1 vs. uniprot
Match: A0A0T6A292_9BACT (TATDN3, TatD DNase domain containing 3, TatD DNase family protein n=1 Tax=candidate division NC10 bacterium CSP1-5 TaxID=1640516 RepID=A0A0T6A292_9BACT)

HSP 1 Score: 220 bits (560), Expect = 5.410e-65
Identity = 121/266 (45.49%), Postives = 162/266 (60.90%), Query Frame = 2 
Query:   44 KMFDCHAHLTDPSLRDRLDERLVEAEAAGVRGIVVVSESLDDALQVVELCARVNCDPQHRIRLHPSLGLHPEKADLAALEGMLELIDAHADDIACVGEVGLDYSRHLIGEAGTEAAERAKEVQRQCFAKQARRADELGLPVNVHSRSAGHHAIRLLQDEGVKRAVFHAFDGKPKYAVEAAKAGYFFSVPPIVCRSRGFQSLVQAVPLESLLLETDSPALAPVKAETNEPKNLTVACEWVARLKNVPVADVVEVTNSNARRLFSRAF 841
            ++ D HAH++D +    L+  L  A  AGV GIV VSE+LDDA  V+EL  R          L P  GL+P+  DL A E M+  I AH D +  +GEVGLD+   ++ E          EVQ Q  AK    ++EL LP+N+HSRSAG H +R LQ  G ++ + HAFDGK   A+E  +AGY+FS+PP V RSR  Q L++ +PL+ L+LETDSP L P  A  NEP+N+ V+C+ +A  K V + +V  VT  NARRLF +AF
Sbjct:    2 ELIDAHAHMSDRAFGTDLETVLQAAAEAGVVGIVTVSENLDDARTVLELAERFPL-------LKPCAGLYPDVLDLEAAEAMVAFIRAHEDRVVGIGEVGLDH--WVVKETN------GWEVQEQALAKFVALSEELDLPLNIHSRSAGGHTVRFLQQHGARKVLLHAFDGKASAALEGIEAGYYFSIPPSVVRSRQKQKLLERLPLDRLILETDSPVLGPDPAARNEPRNVLVSCQAIAAAKGVSIEEVARVTTENARRLFPKAF 252
[Close]
BLAST of mRNA_A-nodosum_M_contig1015.12.1 vs. uniprot
Match: A0A7C2EBA5_9BACT (TatD family deoxyribonuclease n=1 Tax=candidate division NC10 bacterium TaxID=2072417 RepID=A0A7C2EBA5_9BACT)

HSP 1 Score: 218 bits (554), Expect = 5.740e-64
Identity = 126/266 (47.37%), Postives = 158/266 (59.40%), Query Frame = 2 
Query:   44 KMFDCHAHLTDPSLRDRLDERLVEAEAAGVRGIVVVSESLDDALQVVELCARVNCDPQHRIRLHPSLGLHPEKADLAALEGMLELIDAHADDIACVGEVGLDYSRHLIGEAGTEAAERAKEVQRQCFAKQARRADELGLPVNVHSRSAGHHAIRLLQDEGVKRAVFHAFDGKPKYAVEAAKAGYFFSVPPIVCRSRGFQSLVQAVPLESLLLETDSPALAPVKAETNEPKNLTVACEWVARLKNVPVADVVEVTNSNARRLFSRAF 841
            ++FD HAHLT       L   L  AEAAGVRGIV VSE+  +A + + L  R      H + + P+ GL+P   D  A EG+   I  HAD +  +GEVGLD+         T  AE   +VQ +  A+    + EL LP+NVHSRSAG H I  L++ G +R + HAFDGK   A+E  +AGYFFS+PP V RS   Q L + VPLE LLLETDSP L P  A  NEP+N+TVAC  VA LK +   +V  +T  NARRLF RAF
Sbjct:   19 ELFDAHAHLTSADFAQDLPGVLARAEAAGVRGIVAVSETQAEAERALALSRR------HPL-VKPAAGLYPTVLDREAAEGLATFIRQHADRLVALGEVGLDH--------WTVKAEADWKVQEEILARFVTLSTELDLPLNVHSRSAGRHTIAFLRERGARRVLMHAFDGKASAALEGVRAGYFFSIPPSVVRSAQKQKLARQVPLECLLLETDSPVLGPDPAVRNEPQNVTVACRAVADLKGIAPDEVARITTENARRLFPRAF 269
[Close]
BLAST of mRNA_A-nodosum_M_contig1015.12.1 vs. uniprot
Match: UPI0018653474 (tatD DNase domain containing 3-like isoform X1 n=2 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI0018653474)

HSP 1 Score: 214 bits (546), Expect = 8.820e-63
Identity = 110/264 (41.67%), Postives = 167/264 (63.26%), Query Frame = 2 
Query:   47 MFDCHAHLTDPSLRDRLDERLVEAEAAGVRGIVVVSESLDDALQVVELCARVNCDPQHRIRLHPSLGLHPEK---ADLAALEGMLELIDAHADDIACVGEVGLDYSRHLIGEAGTEAAERAKEVQRQCFAKQARRADELGLPVNVHSRSAGHHAIRLLQDEGVKRAVFHAFDGKPKYAVEAAKAGYFFSVPPIVCRSRGFQSLVQAVPLESLLLETDSPALAPVKAETNEPKNLTVACEWVARLKNVPVADVVEVTNSNARRLF 829
              DCH H++     + +++ + +++  G+ G+V V+E   +  ++++L  R        + +HP  G+ PE    A L  L+  L LI+ H D +  +GEVGLD++   +      ++++ KE QR+   +QA  A  L LP+NVHSRSAG   I LL+++GV++A+ HAFDGKP  A+E  KAGY+FS+PP + RS   Q LV+ +PLES+ LETDSPAL P K   NEP+N+TV+ E++A++K VP+  V+EVT  NA RLF
Sbjct:    4 FIDCHCHISATEFDNDIEDVIEKSKQVGILGLVAVAEHAGEFEKIIQLSERFPGFVFPCLGVHPVQGVPPEPQRGATLEDLDAALPLIEKHKDRLLAIGEVGLDFTPRFL------SSDKGKEEQREVLIRQAEIAKRLDLPLNVHSRSAGRPTIHLLKEQGVEKALLHAFDGKPSVAIEGVKAGYYFSIPPSIVRSEQKQKLVKQLPLESICLETDSPALGPEKQVRNEPRNITVSAEFIAKVKGVPLEQVIEVTTRNALRLF 261
[Close]
BLAST of mRNA_A-nodosum_M_contig1015.12.1 vs. uniprot
Match: A0A1Y1VVX4_9FUNG (Mg-dependent DNase n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1VVX4_9FUNG)

HSP 1 Score: 214 bits (546), Expect = 1.130e-62
Identity = 116/281 (41.28%), Postives = 167/281 (59.43%), Query Frame = 2 
Query:   38 ASKMFDCHAHLTDPSLRDRLDERLV-EAEAAGVRGIVVVSESLDDALQVVELCARVNCDPQHRIRLHPSLGLHP----------------EKADLAALEGMLELIDAHADDIACVGEVGLDYSRHLIGEAGTEAAERAKEVQRQCFAKQARRADELGLPVNVHSRSAGHHAIRLLQDEGVKRAVFHAFDGKPKYAVEAAKAGYFFSVPPIVCRSRGFQSLVQAVPLESLLLETDSPALAPVKAETNEPKNLTVACEWVARLKNVPVADVVEVTNSNARRLF 829
            ++  FDCHAH+  PS      E +V +A+   V+GI+ V+E+ +D L V+      N   Q+   + P +GLHP                  + L  +  +L+LI  H  +I C+GEVGLDYS   +     +  E  K +Q+Q F KQ   A+EL +P+NVHSRSAGH+AI  L ++  K  V HAFDGKP YA +  +AG++FS+PP + RS   Q LV  +PL+ +LLETDSPAL+P K   NEP N+ ++CE +AR+KN+ + +V  +TN NA +LF
Sbjct:    2 SNTFFDCHAHINSPSFSKENIEIIVNKAKEKNVKGIISVAETYEDCLDVL------NVAKQYSKIILPGIGLHPIQPLVDENGQRLDKGGRSSTLDEVYPVLDLIKEHQKEIVCIGEVGLDYSPQFL-----KNVEEEKIIQKQIFEKQIELANELNIPLNVHSRSAGHYAIETLIEKNAKNVVLHAFDGKPGYAQKGLQAGFYFSIPPSIKRSPQKQKLVNILPLDRILLETDSPALSPEKNTINEPSNVIISCEEIARIKNISIEEVARITNENALKLF 271
[Close]
BLAST of mRNA_A-nodosum_M_contig1015.12.1 vs. uniprot
Match: UPI001ABE454F (putative deoxyribonuclease TATDN3 isoform X1 n=6 Tax=Bufo TaxID=8383 RepID=UPI001ABE454F)

HSP 1 Score: 214 bits (546), Expect = 1.570e-62
Identity = 121/272 (44.49%), Postives = 167/272 (61.40%), Query Frame = 2 
Query:   47 MFDCHAHLTDPSLRDRLDERLVEAEAAGVRGIVVVSESLDDALQVVELCARVNCDPQHRIRLHPSLGLHP---------EKADLAALEGMLELIDAHADDIACVGEVGLDYSRHLIGEAGTEAAERAKEVQRQCFAKQARRADELGLPVNVHSRSAGHHAIRLLQDEGVKRAVFHAFDGKPKYAVEAAKAGYFFSVPPIVCRSRGFQSLVQAVPLESLLLETDSPALAPVKAETNEPKNLTVACEWVARLKNVPVADVVEVTNSNARRLFSR 835
              DCH HL+       +D  L EA+AAGV+ +V V+E   +  +V++L  R    P+    + P LG+HP           A+L  LE  L LI+ + DD+  +GEVGLD++  +   A T+     KE QRQ F +Q + A +LGLP+NVHSRSAG   I LL+++G +  + HAFDGKP  A+E  KAGY+FS+PP + RS   Q LV+ +PLE+L LETDSPAL P K   NEPKN+T A E++A++K + + +V  VT  NA RLF R
Sbjct:   23 FVDCHCHLSAAEFSHDIDNVLDEAKAAGVQALVAVAEHSAEFEKVIQLSRRY---PE---LVFPCLGVHPVQASNAEQQRSANLKDLEDALPLIEHYKDDLLAIGEVGLDFTPRI---ANTDDQ---KEEQRQVFIRQIQLAKQLGLPLNVHSRSAGRPTINLLKEQGAEHVLLHAFDGKPSVAMEGVKAGYYFSIPPSIIRSEQKQKLVKQLPLENLCLETDSPALGPEKQIRNEPKNITYAAEYIAKVKGISLEEVTRVTTENALRLFPR 282
[Close]
BLAST of mRNA_A-nodosum_M_contig1015.12.1 vs. uniprot
Match: A0A1Y3N0C6_PIRSE (Uncharacterized protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3N0C6_PIRSE)

HSP 1 Score: 213 bits (543), Expect = 3.040e-62
Identity = 113/280 (40.36%), Postives = 168/280 (60.00%), Query Frame = 2 
Query:   41 SKMFDCHAHLTDPSL-RDRLDERLVEAEAAGVRGIVVVSESLDDALQVVELCARVNCDPQHRIRLHPSLGLHP----------------EKADLAALEGMLELIDAHADDIACVGEVGLDYSRHLIGEAGTEAAERAKEVQRQCFAKQARRADELGLPVNVHSRSAGHHAIRLLQDEGVKRAVFHAFDGKPKYAVEAAKAGYFFSVPPIVCRSRGFQSLVQAVPLESLLLETDSPALAPVKAETNEPKNLTVACEWVARLKNVPVADVVEVTNSNARRLF 829
            +  FDCHAH+  PS  ++ + + + +A+   V+GI+ V+E+ +D L V+      N   Q+   + P LGLHP                  + L  +  +L+LI  H D+I C+GEVGLDYS   +     +  E  KE+Q+Q F KQ   A+E  +P+NVHSRSAGH+AI  L  +  K  + HAFDGKP YA++  +AGY+FS+PP + RS   Q LV+ +PL+ ++LETDSPAL+P K   NE  N+ ++CE +A++K + V +V  +TN NA +LF
Sbjct:    2 ASYFDCHAHINSPSFSKEAISDLVKKAQEKNVKGIISVTETYEDCLDVL------NVVMQYPNIILPGLGLHPIQPLVDENGQRLDKGGRSSTLDEVYPILDLIKEHKDEIVCIGEVGLDYSPQFL-----KNVEEEKEIQKQIFQKQIELANEYNIPLNVHSRSAGHYAIETLISKNAKNVLLHAFDGKPGYALKGLQAGYYFSIPPSIRRSPQKQKLVKNLPLDRIILETDSPALSPEKNTINESSNVVISCEEIAKIKGISVEEVARITNENAIKLF 270
[Close]
BLAST of mRNA_A-nodosum_M_contig1015.12.1 vs. uniprot
Match: I2CPC6_NANGC (Dnase domain containing 3 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CPC6_NANGC)

HSP 1 Score: 214 bits (544), Expect = 3.110e-62
Identity = 133/290 (45.86%), Postives = 166/290 (57.24%), Query Frame = 2 
Query:   47 MFDCHAHLTDPSLRDRLDERLVEAEAAGVRGIVVVSESLDDALQVVELCARVNCDPQHRIRLHPSLGLHPEKADLAALEGMLELIDAHADDIACVGEVGLDYSRHLIGEAGTEAAERAKEVQRQCFAKQARRADELGLPVNVHSRSAGHHAIRLLQD--------------------------EGVKRAVFHAFDGKPKYAVEAA---KAGYFFSVPPIVCRSRGFQSLVQAVPLESLLLETDSPALAPVKAETNEPKNLTVACEWVARLKNVPVADVVEVTNSNARRLF 829
            MFD HAHLT   L   LD  L EA + GVR IVVVSE++ DA  V+ L     C  Q+ +RLH SLGLHPE A L +L  +L LI  +   +ACVGE+GLD+S H++G    EA    K +QR+C  +Q   A EL LPVNVHSR AGHHA+ LL++                          EG  RAV HA+DGK KYA  AA   +   +FSVPP   RS      ++ +PLESLLLETD PALA VK E N P+NL ++ + +   K V +  V E+T  NA  LF
Sbjct:    1 MFDVHAHLTAQELLPDLDRLLTEAYSVGVRDIVVVSENVRDAALVLNLPP---C--QNGVRLHKSLGLHPEHACLKSLSTVLNLIRENHTKLACVGEIGLDFSPHILGHDDAEAV---KALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELF 282
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1015.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNX7_ECTSI1.770e-12671.38TatD DNase domain containing 3 n=1 Tax=Ectocarpus ... [more]
A0A6H5KIS3_9PHAE4.940e-11964.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UWP9_9STRA1.890e-6846.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0T6A292_9BACT5.410e-6545.49TATDN3, TatD DNase domain containing 3, TatD DNase... [more]
A0A7C2EBA5_9BACT5.740e-6447.37TatD family deoxyribonuclease n=1 Tax=candidate di... [more]
UPI00186534748.820e-6341.67tatD DNase domain containing 3-like isoform X1 n=2... [more]
A0A1Y1VVX4_9FUNG1.130e-6241.28Mg-dependent DNase n=1 Tax=Anaeromyces robustus Ta... [more]
UPI001ABE454F1.570e-6244.49putative deoxyribonuclease TATDN3 isoform X1 n=6 T... [more]
A0A1Y3N0C6_PIRSE3.040e-6240.36Uncharacterized protein n=1 Tax=Piromyces sp. (str... [more]
I2CPC6_NANGC3.110e-6245.86Dnase domain containing 3 n=3 Tax=Monodopsidaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1015contigA-nodosum_M_contig1015:90522..97675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNX7
Preferred nameTATDN3
PFAMsTatD_DNase
Model size1481
Max annot lvl2759|Eukaryota
KEGG koko:K03424
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.41e-130
EggNOG OGsCOG0084@1|root,KOG3020@2759|Eukaryota
Descriptionhydrolase activity, acting on ester bonds
Cds size804
COG categoryL
BRITEko00000,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1015.12.1prot_A-nodosum_M_contig1015.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1015 91153..97629 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866374.3075852-UTR-A-nodosum_M_contig1015:90521..911521680866374.3075852-UTR-A-nodosum_M_contig1015:90521..91152Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1015 90522..91152 -
1680866374.3834698-UTR-A-nodosum_M_contig1015:97629..976751680866374.3834698-UTR-A-nodosum_M_contig1015:97629..97675Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1015 97630..97675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866374.3245301-CDS-A-nodosum_M_contig1015:91152..913021680866374.3245301-CDS-A-nodosum_M_contig1015:91152..91302Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1015 91153..91302 -
1680866374.3349524-CDS-A-nodosum_M_contig1015:91787..919231680866374.3349524-CDS-A-nodosum_M_contig1015:91787..91923Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1015 91788..91923 -
1680866374.3472667-CDS-A-nodosum_M_contig1015:92501..926171680866374.3472667-CDS-A-nodosum_M_contig1015:92501..92617Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1015 92502..92617 -
1680866374.3593342-CDS-A-nodosum_M_contig1015:92835..931051680866374.3593342-CDS-A-nodosum_M_contig1015:92835..93105Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1015 92836..93105 -
1680866374.3722124-CDS-A-nodosum_M_contig1015:97497..976291680866374.3722124-CDS-A-nodosum_M_contig1015:97497..97629Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1015 97498..97629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1015.12.1

>prot_A-nodosum_M_contig1015.12.1 ID=prot_A-nodosum_M_contig1015.12.1|Name=mRNA_A-nodosum_M_contig1015.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=268bp
MFDCHAHLTDPSLRDRLDERLVEAEAAGVRGIVVVSESLDDALQVVELCA
RVNCDPQHRIRLHPSLGLHPEKADLAALEGMLELIDAHADDIACVGEVGL
DYSRHLIGEAGTEAAERAKEVQRQCFAKQARRADELGLPVNVHSRSAGHH
AIRLLQDEGVKRAVFHAFDGKPKYAVEAAKAGYFFSVPPIVCRSRGFQSL
VQAVPLESLLLETDSPALAPVKAETNEPKNLTVACEWVARLKNVPVADVV
EVTNSNARRLFSRAFLR*
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mRNA from alignment at A-nodosum_M_contig1015:90522..97675-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1015.12.1 ID=mRNA_A-nodosum_M_contig1015.12.1|Name=mRNA_A-nodosum_M_contig1015.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7154bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:90522..97675- (Ascophyllum nodosum dioecious)
GGCAGCAGGTCAAAGTACGAGGGGCGAAGAGCGCGCAGCCTCAAAAATGT
TCGATTGCCACGCGCACCTGACGGATCCTTCCCTGCGGGATAGATTAGAT
GAACGTTTGGTAGAGGCCGAGGCAGCCGGCGTGAGGGGTATTGTTGTGGT
GTCTGAATCTCTCGATGATGCCTTGCAGGTAAGTAGTCTTCCGTAATCTT
CATCTTTACATGGAGAACGATTAATTCGTTAGTACACAAAATTCGACTTC
ACGGTCGACGAGGGAAAGGAATGGCTGAATCCTTCTCGCGACAAAAATCA
AGGCACGCACCGCAGAAGGAAGGTGGATTAAAAATCCTGTGTGACCTTCC
TCCTGTGTGACCCCGGCTGGTACGTCCAACGAACTTGATGTCCAGAATGG
ATGGGAAGAAAACACAAACACACAACACAGTAAATGTAGCCTACTCCTGT
ATTTTGCAATGAAGACCACTATACATAATTTTTGTGCCGGTCGCTCCGGT
GGTTTGGTTGGTAACCTCGAAACCTTCTGACGTTGGGACGTGAGTTCGAA
TCTCGATGCAGTCACACGAACTGGGATTTTTCCTCACAAAAAAAAGAAAG
AAAAGAAGAAGAAGAAAAAAACAAAAGAAAAGCCCAACAAGTGGAGAACG
ATAAATCGTTGGTACACAAAATTCGACTTCGCGGTCGACGAGGGAAAGGA
TCGGCCGAATCCTTCTCGCTAGAAAAAATTAAGGCAAGCACCGCAGAAGG
AAGGTGGATGAGGAATCCTGTGTGACCTTCCTCCTGTGTGACCGGCTGGT
TCGTCCACCAACCTGACGTCCAGAATAAATGGGATGCCAGCACACAGACA
CACAATACAGTGTGAGCAGACTGCTTACTGAACTTTAGTGCGACACGTGT
GTGTGTTTTTGCCGCCCTATTCTTCCTTCATTTCCACTCTATAACACTAT
GGTTTTGATCGACTGATTGAAATCTCACATTGTACTTTCAACATGCCCAC
TTCAAACCAATAGTGGGTGTGGGAAAGAGAGGCATATTAATTGGTCCATG
GTGACTTGCCAAGGCAGCAGCCGTTTGGAACTGCCTTGAGGTTTATTGGC
CCTGTGCCGGCGTACTCTCGGCAGCGAACGCCATCGATACGCAATTGCGT
GACCCGATAAACTCGGGACTGACCCGATGGCGTCTGGAGGTTTAAATAAA
TAAATGGACGCCGCCGCGGAAATCGGGAGGAATTCCGTAAGTAAGCACCA
GATTCAGCCTGAGTATGGAGATGAACAGGCTGACGCGGGCCGGGACTGCC
GAACCCATCTCGTGAGACCAAACTCTCTGGCGCGAACGGGGACAGGGAAA
ATTCTAGGGCTCTTCTCGGTAACGATTTTTGAGGTTGGTAACATTTACCG
CGGTATTCAGACATCACGGTAATGCACGGTATTTTTGGATGGTAATCGGC
CACTCTGGTATACATACTACCGTGGTGCTCAGCCCCCACGGTAATGCACG
GTATTTCTTGGATGGTAATCGGCCACTCTGGTACATTTTACTGCGGTATT
CAGCCACCACGGTAGGTAATGTATGGTATATTTTATATTTTATATTTTTT
GGGGTTTCTCCCGCGTGCGTGTGGTGTTGCGATGCCAGTACGGTCACAGA
ACACGAAAATCACCAGACCTCGAACTTAAATATGAAGTACTGTACAGATC
TCCGGAGAACACAATAAAAGGCAGTGTCCAGATCACAATAAAAGGCAGAC
ATTCGCAGCCAACAGACAACGATCACAAGCAAGAGCTACGCCCCCCGATA
TCAACTGCTTCATCACCAGACCAAATCCGTTAAAGAACCTTCCTCCCCCT
TACAAACTACGGTTTCGTACGGTATATTATTGTCACATGGACACAAGTCC
ACAGCAACTTCTGCAAAACGGCAGTTCAACACATCCGTACTGTACACCAC
AAAATTACAGATTCATAGGTTCAAGACAAGAGCGACCAAACTCTTCACCA
TCTTAGAGTCAAGGGCATTGCGAACGATTCACCATTGCCCCCCCCACTTG
CGCAACTTTCTCTTTGCACCGAGCTGCCGCTGCTTTGTTGGCTTCGATGG
CGTCGTGGAGAGCCTTGACCTGCGGGAACGACACCCATTGTAATGGCCTA
GTCGACTGGGCCGATGGGTGTTACCAACCTCGAAAATCGTTACCGAGAAG
AACCCTGGAATTTTGTGTACTACGTAACGATTTAATCTATGAAACAACAG
TTTCGCTGTACACGTTTTAGAATATCTCTGTGGACTCGTTGTAAAGTGTA
AATATTTTCGCAGTACAAGCATAGCTACATGTAACACGTAGTATGAAATC
GAAACACGTACTGAATATAAAGCATGGTAAAAAATGTATTTGTACATAAC
GTTATATTGTACAGTATACAATAACTTCATGTTGTAATATAGATTATCTT
ATATTATTACATTGGTACTAAACTGTATTATCACTGTACGTACTTGTGGC
TCCCAACAGAAAAAGAAAGTTCGCCAAACTCTTCTTCTACCATCTGCTGC
AAACTGAGCTCCGCCGCCTCCTCGCCGACCGCCCAGAAGTGGGCTTGATG
CCGTCTTCTGTCCAAGTGCAGTTGCCGGTGTCTGTGCATCGGCTGACTTG
TGCGACACTATGCTCGTTCTCTTCTTTGCTCAGGGCGCCAAAGCTTACTC
GCCTGGGTATTTTTTCGTGCCTTCTTCGAAACTCTTCCTCATCTCCCGAC
ATTACGCAAACATTCGTCGTTGGTGCTATGGAGTGGCTCCGTGGTGGATG
ATATCAGAGACTTTGTAGCCACGTGTTGGTAATTTTTTCTCTTATTTTTT
AGTGAGGAAAAATCCCAGTTACCGGGATTCGAACTCACGTCTTAACGTGT
CAGAAGGTTACGAGGTTACCAACTGAGCTACCGGGAAAAAAAAGGAAAGA
AAAAGAGAAAAAGAGCAATAGAAAAAAAATAAAAAAATAAAAGAAAAACA
CTTGACGGTCGTTGACCCAGAGACTCTGTTCATGCGCAACTCTAAACTAA
TATATTGGTAGTTGACCCAGAGACTTTTTAAAGAAAAATCGGAATGCACC
TAGACCTTCTGAGCATCCCCCGGTTAGGGGGGAAAACAGGTCAAAACGTT
TAGGTGGGGTCAAAGGCTGCAAATACAAAACCTCTTCATGGCATTTAAAC
GGGTTCCCCTATGGTGGTACCATTGGGTTTACAGTATAATATCGGGGAGA
AGCCCGCCGTTATACTGTACTCTTACATTAATCGCCATGCAGGGACACCA
GAAAAACAGCAAAGACAAAACAGTTGTTGTTGTGTTTGACATCATCAAAC
AATAAAGACCAATCCAATACCATCATTGCAACGAGAACAGAGGACCATGA
TGATGTAGAATCTTCATACCATGTACACGACCCCGTTATTCACCTGGAAG
TAGACGAAGAGCAGTATGCATAGGCGATCACACAAGGCGGTAAGAGGCAA
GCGGAAAGAACTAGGTTCCTCGCTCCATACTTGTCAGGGCTACGACACAC
AGATGCTCCTCATGCATGGACTTAGCTATGGTCCCGCGTTGACCAGAAAC
ACAAAGGAAAGAGCATCTGTCTGTCAAAGTGACCAAGTAGGCCTCAGGCC
ACCTCGTGTAACCTCCCATACGATCCTGACCCGAACTATCTTCAGCTCCA
TGTCTTTTATTCCGAACTGTCGTGCCGAATATCATCAGTTCCTTGAATCT
TCTTGCAGAACGTACACCAGCTCCATTTTATCAATCGTTTCTCCAATCTT
CTTGCAGAGCGGGACTGTATGATTGTACTTTGGTTTCAGTAAAAATGATC
TAATTAGCTAGTCAGGAAAAACGATTGTCTCAGGCACTTGACAATATTTT
TTCATGATCTAGATAGGGGTTTTTTATACAGGATAATAAAGAAGAACACA
TAACCTTGTTCATGCGCAACTCTAAACTAATCTATTGCCCCACCGACATG
CATTGCGTAATACCGAAATTTCAGTAATAGATGTGTAACACAGTAACAGT
AATTGGTAGTTTGATATTTTCGCGGTAACAGTTACCATGATATCGAGATA
TCACGGAAATTTCAATATTTGCGTGGTGACGTTTTGGATGGGAACGGAAT
AATGCAATTTCTTTGGTAACGGTTAAGATGGGATTGGTAATTCCTATTTC
TCACGGTAACCTACGAATCACCAATTACCGGGGAAAATGCCGCGGTATTT
TACCGTGGTAATTTTACGGAGAAGAGCCCTGGAAAATTTAGACGGGGACA
GGGAAAAAAACATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAAC
CTTACCCGGTTGATCCATACTCTTGCAATATGTGATGACGATACATACAT
ACATACATAAGCTGAAGTAAAAAAATCCAGCCCGTCGTCACAAGGTAGAA
AAACACCATCCGGAAGGAAAAAACGTACGACGTACTCTCCATACAAAGAG
AAAACTGCAATATAGCTATACAACTGATTTATCTTGTCCCCGCTTTCACG
AACGGTCTCCATATCTCTAGGTGGTGGAGTTGTGCGCGCGCGTCAACTGC
GACCCGCAGCACAGGATACGCCTGCACCCGTCTCTCGGCTTGCACCCAGA
GAAGGCTGATCTGGCAGCTCTCGAGGGCATGCTGGAACTGATCGACGCTC
ACGCGGACGATATAGCCTGCGTCGGCGAGGTGGGACTAGACTATAGTCGC
CACCTGATCGGAGAGGCCGGGACGGAGGCGGCCGAGAGGGCGAAGGAGGT
GCAGCGGCAGTGCTTCGCCAAGCAGGCTCGTCGAGCAGATGTGGGTCGGT
GTTTCACGTTTTAGAGCCAGGCCTATTTTTTTTTTTGACACAGCGGCGAT
GCGTGGTGCTCCATTTTGTCGAGATTCCCAGAACTTTTTGGAAACCTCGG
GTGCTGTACTCCCTGAACTTTTCCGGGGCGCGTGTTCTCTGACTCGATCC
TTCATCGGAGTGCACCTGACTGATCATTGATCCGACGGCACGCGTACGCG
GATCGAAGGAGCTGGGGCTTCCAGTGAACGTGCACAGCCGCTCGGCGGGA
CATCACGCCATACGACTCCTGCAAGATGAAGGCGTCAAACGTGCAGTCTT
CCATGCCTTCGACGGAAAGCCCAAGTGAGTACAACTGAGCGACTTGGTCG
GACCTCGCCGCCAACCCGCTTCCGTCCACCTCCGCCCCCCCCCCCCCGCC
TCGAGCCTAGTTATGATAATTCGCTTCTTTCCCAAATGTAGAGAGAGTAC
GATGGATACGGCGACATCTGAACTTTCTGGGCGAAAATAATCGCGACGCT
GCTTTTTCACCGGAGCGCTATGCGAACTTTCAGCAGAACACAGAACGTGA
TGCGTTTGTGAAGATCCGTCAGCGATCGAATCTCTTCAATTTTTCGATCA
ATCCATATTAATAGCATTCGTGCGAAGCTGCCCATTTTTACCCATAAATT
TGAGTGGGGGGCGGGTAGGTATCGTTAGCTTGCTCCCGCATCCTTTCGAT
AGATCTACGCAGGCGTATACCGCGCTACCCCCGGTCGCTCAAGGAAATGA
AGGGGCTCATAATAATGCATCAAGGAACAGAGGCATGAGGTTTCCGTCGA
GCACCGGATCGAGCGCGATCTCCCCGCGGAGAGACGGTAGTCGGGAGACA
CCTCGGACGATGCCGTGCCCCTTACACCCACCCCGCGACGGATACGCGGC
AGGTACGCGGTGGAGGCGGCAAAAGCGGGATACTTCTTCTCGGTCCCCCC
GATCGTCTGCCGCTCACGAGGTTTCCAAAGTCTCGTGCAGGCGGTTCCTT
TGGAGTCGCTGCTGCTTGAGACCGATTCGCCGGCGTTGGTGAGTGAGAGC
CTTGTGCCCGTCATGCTGTTGCCAGTCAGGCGCAGAGGGCGCAGGTAATT
GATCTTTATGTAGAACGCTTCATTTTAAAAGTTTCAATGATAAATTATTT
TTAGCCTTGAGGTGGAATCGCGGATATCTGAACTTGGCCAACCCGCGAAC
CACACTATTAAATAGTATCTAAGTTATAGATCGCCCGCGAAGGGGAGAAT
CTTCGTGGACTGGGTAATGAGGTGGAGTAAAACAGAGTTCATCAACCGAG
CTACTTTCCCCTCATAGTGTCGCTTCTTATCTTGAAGAAAACCGTTGGCT
CTTGGTTTGCCTGCTCTGCTGGTAACCGTAGTTTCCACGTGTCCTCAACT
CTTGCGACCGTTGACTGCGCGCATCTATGCGCGCGCTCTGCGTCAAGTTC
CGCCCAACCCAGCGTGCGCTCTTTTGCTTCAATAGCGAAAGAAACAGAGG
AAATGCTAATGCTTGAACCACAGGCCCCCGTGAAAGCGGAGACGAACGAG
CCGAAGAACCTCACCGTCGCGTGTGAATGGGTCGCGAGGTTGAAGAACGT
TCCCGTTGCCGACGTCGTCGAGGTCACCAATTCCAATGCTCGCCGACTTT
TCTCACGCGCCTTCCTGAGATAGCAGCATTCGTTCGCACCAGCGACAAGG
GAGGCGCGGAAATAGCGACAGCAAAAAAGAGACGGCATGGTTTTTGTACG
ACTAAGGGTTTATGACGACGAACGAGCGGTTTTGCGACCGAAATGCGTGG
GAGCCGAGTAGCTTGTTGCGTATAAAGAAACCTGTATGGACTTGGTTTCT
TTAGCGATCCAAAGAGGTGGGTGGCCCAAAGTTCGACGATGACACGGGGC
CTTACAAGCGGGAAGGGACGTTGAATACCCGGCTTACTTTCAGCGGACAC
GAGCTCCTGGGGTGTCCCATGCAGGCCCGGCTACAAAAAGTATACGGGAG
TGTTAAGCTAGCGACGGTTATAAACGGGACGGGTGATGATTGCTCCCTTG
TGCTCCCGCACCCCCCCCGGCGAAAGCCATACTAAACCCCGGTGGGATAT
CCCTGCTGGAGGCGTTTACGCTCACCCGGGGAGCGATCAAAGCACCTTAG
ATAGAGAGATCTTCGGCCGTGTCGTGTAGGTACGGAAACATATGCCGTGG
ATATAGAAGGATAAAGGTATTACCGTACTGTAATCCAGCATATTATTAGT
ATATTAATCGTAATAGTAAGAAGTACCGCACGTACAGTACCTGGCAACCC
GTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1015:90522..97675-

>mRNA_A-nodosum_M_contig1015.12.1 ID=mRNA_A-nodosum_M_contig1015.12.1|Name=mRNA_A-nodosum_M_contig1015.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:90522..97675- (Ascophyllum nodosum dioecious)
ATGTTCGATTGCCACGCGCACCTGACGGATCCTTCCCTGCGGGATAGATT
AGATGAACGTTTGGTAGAGGCCGAGGCAGCCGGCGTGAGGGGTATTGTTG
TGGTGTCTGAATCTCTCGATGATGCCTTGCAGGTGGTGGAGTTGTGCGCG
CGCGTCAACTGCGACCCGCAGCACAGGATACGCCTGCACCCGTCTCTCGG
CTTGCACCCAGAGAAGGCTGATCTGGCAGCTCTCGAGGGCATGCTGGAAC
TGATCGACGCTCACGCGGACGATATAGCCTGCGTCGGCGAGGTGGGACTA
GACTATAGTCGCCACCTGATCGGAGAGGCCGGGACGGAGGCGGCCGAGAG
GGCGAAGGAGGTGCAGCGGCAGTGCTTCGCCAAGCAGGCTCGTCGAGCAG
ATGAGCTGGGGCTTCCAGTGAACGTGCACAGCCGCTCGGCGGGACATCAC
GCCATACGACTCCTGCAAGATGAAGGCGTCAAACGTGCAGTCTTCCATGC
CTTCGACGGAAAGCCCAAGTACGCGGTGGAGGCGGCAAAAGCGGGATACT
TCTTCTCGGTCCCCCCGATCGTCTGCCGCTCACGAGGTTTCCAAAGTCTC
GTGCAGGCGGTTCCTTTGGAGTCGCTGCTGCTTGAGACCGATTCGCCGGC
GTTGGCCCCCGTGAAAGCGGAGACGAACGAGCCGAAGAACCTCACCGTCG
CGTGTGAATGGGTCGCGAGGTTGAAGAACGTTCCCGTTGCCGACGTCGTC
GAGGTCACCAATTCCAATGCTCGCCGACTTTTCTCACGCGCCTTCCTGAG
ATAG
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