mRNA_A-nodosum_M_contig996.32.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig996.32.1
Unique NamemRNA_A-nodosum_M_contig996.32.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig996.32.1 vs. uniprot
Match: A0A6H5JJZ4_9PHAE (Metallophos domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJZ4_9PHAE)

HSP 1 Score: 487 bits (1254), Expect = 6.640e-172
Identity = 235/298 (78.86%), Postives = 254/298 (85.23%), Query Frame = 1 
Query:   19 RSHVAESPSSRSRS--RRFEGRQPPRAGAEEQAVSSDGSTIFALRAPDVVFCGDKSRGRKLRMVCISDTHGKHHAIRHKIPDGDILVHCGDFSTKLYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNATYLEDSSARVEGLKFYGTPWTNSSHMASFEGRRGGAEGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGSWSLTDRVARLKPKVHVFGHVHNSHGIVRRDETIYINAAQDLNPQPIFLDIWV 906
            RSHVA   S+ SR   RR EGR  PRAGAEE AV+SDGSTIFALRAPD+V CGDKSRGRKLR+VC+SDTHGKHHA+RH IPDGDIL+HCGDFSTKL QRDFEA VEDFDRFLGSLGH HKLVI GNHEIAFN+YTREQIQRR+SNATYLEDS   VEGLKFYGTPWTNSSHM           GFSC+G  LEGVWSAIPE VD+LLTHMPP+N LDLAFD G+ ++ DPC VCGE HRS+AHWGSWSLTDRVA LKPKVHVFGHVHNSHGI+R+DET+YINAAQD N QPIF DIWV
Sbjct:   31 RSHVASPTSTPSRGGRRRLEGRSVPRAGAEEPAVTSDGSTIFALRAPDIVCCGDKSRGRKLRVVCLSDTHGKHHAMRHTIPDGDILIHCGDFSTKLQQRDFEAAVEDFDRFLGSLGHPHKLVIAGNHEIAFNNYTREQIQRRISNATYLEDSETTVEGLKFYGTPWTNSSHM-----------GFSCRGAQLEGVWSAIPEGVDILLTHMPPFNRLDLAFDRGSNAKADPCPVCGETHRSFAHWGSWSLTDRVAELKPKVHVFGHVHNSHGIIRKDETVYINAAQDENQQPIFFDIWV 317
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BLAST of mRNA_A-nodosum_M_contig996.32.1 vs. uniprot
Match: D7FHZ7_ECTSI (Metallophos domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ7_ECTSI)

HSP 1 Score: 372 bits (956), Expect = 4.880e-128
Identity = 173/219 (79.00%), Postives = 187/219 (85.39%), Query Frame = 1 
Query:  250 IPDGDILVHCGDFSTKLYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNATYLEDSSARVEGLKFYGTPWTNSSHMASFEGRRGGAEGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGSWSLTDRVARLKPKVHVFGHVHNSHGIVRRDETIYINAAQDLNPQPIFLDIWV 906
            + DGDIL+HCGDFSTKL QRDFEA VEDFDRFLGSLGHRHKLVI GNHEIAFN YTREQIQRR+SNATYLEDS   VEGLKFYGTPWTNSSHM           GFSC+G  LEGVWSAIPE VD+LLTHMPP+N LDLAFD G+ ++ DPC VCGE HRS+AHWGSWSLTDRVA LKPKVHVFGHVHNSHGI+R+D+T+YINAAQD N QPIF DIWV
Sbjct:   14 LQDGDILIHCGDFSTKLQQRDFEAAVEDFDRFLGSLGHRHKLVIAGNHEIAFNHYTREQIQRRISNATYLEDSETTVEGLKFYGTPWTNSSHM-----------GFSCRGAQLEGVWSAIPEGVDILLTHMPPFNRLDLAFDRGSHAKADPCPVCGETHRSFAHWGSWSLTDRVAELKPKVHVFGHVHNSHGIIRKDDTVYINAAQDENQQPIFFDIWV 221
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BLAST of mRNA_A-nodosum_M_contig996.32.1 vs. uniprot
Match: A0A7S4MMV8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MMV8_9EUKA)

HSP 1 Score: 243 bits (620), Expect = 1.110e-76
Identity = 111/228 (48.68%), Postives = 151/228 (66.23%), Query Frame = 1 
Query:  190 KLRMVCISDTHGKHHAIRHKIPDGDILVHCGDFSTKLYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNATYLEDSSARVEGLKFYGTPWTNSSHMASFEGRRGGAEGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGSWSLTDRVARLKPKVHVFGHVHNSHGIVRRDETIYINAAQDL 873
            ++R+V ISDTH  H+     IPDGDIL+H GDF+ ++    FE  +EDF+ FLG+L H+HK+ + GNHEIA N+YT+++IQ+ L N  YL+DSS ++ G+KFYG+PWT SS M           GFSC   +++  W  IP   D+L+THMPP+N+LDLAF       N  CS CG+ H  Y HWGS SL +RV  +KPK H+FGHVH+  G  R  +T ++N+A DL
Sbjct:   19 RVRIVHISDTHKSHNRYLSSIPDGDILIHSGDFAQRMKTEGFEEKMEDFNNFLGALPHKHKIFVAGNHEIALNNYTKKEIQKMLPNCVYLQDSSVKLMGIKFYGSPWTTSSRM-----------GFSCPRAEIKKKWKKIPRSTDILITHMPPFNILDLAFSSKALD-NSTCSTCGKSHERYRHWGSNSLLERVETVKPKFHLFGHVHDDPGFKRVGDTTFVNSAVDL 234
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BLAST of mRNA_A-nodosum_M_contig996.32.1 vs. uniprot
Match: A0A817R4F3_9BILA (Hypothetical protein n=6 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817R4F3_9BILA)

HSP 1 Score: 190 bits (483), Expect = 7.860e-56
Identity = 100/253 (39.53%), Postives = 145/253 (57.31%), Query Frame = 1 
Query:  181 RGRKLRMVCISDTHGKHHAIRHKIPDGDILVHCGDFSTK-----LYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRL-SNATYLEDSSARVEGLKFYGTPWTNSSHMASFEGRRGGAEGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGER-HRSYAHWGSWSLTDRVA-RLKPKVHVFGHVHNSHGIV---RRDETIYINAAQDLNPQPIFLDIWV 906
            R + + +V +SDTH  H  I   IPDGDI +HCGDF+ K     L        + DF+++LG L H+HK+VI GNHEI F  Y++E+IQ  L +N  YL+D   +VEG+  YG+PW+   H  +                     W +IP ++D+L+TH+PP  +LDLAF     +  +PCS+C +  H SY HWGS SL   +  R++P++H FGHVH+ +G        ET++INAA DL  Q   L+ ++
Sbjct:   21 RYKSISVVIVSDTHKNHEVIN--IPDGDIFLHCGDFTNKGDWRSLTNDQIPQSIIDFNQWLGRLKHKHKIVICGNHEIGFQKYSKEEIQSNLLTNCIYLKDELIQVEGITIYGSPWSFKEHYRT--------------------KWLSIPSNIDILMTHIPPKFILDLAFQPKKVASTEPCSMCNDTVHGSYGHWGSKSLIKEIRERIQPRIHCFGHVHDDNGYKYDQHESETLFINAATDLTGQVFKLNFYL 251
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BLAST of mRNA_A-nodosum_M_contig996.32.1 vs. uniprot
Match: A0A1S3JYP0_LINUN (UPF0046 protein C25E10.12-like isoform X1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JYP0_LINUN)

HSP 1 Score: 187 bits (476), Expect = 1.580e-54
Identity = 99/262 (37.79%), Postives = 147/262 (56.11%), Query Frame = 1 
Query:  172 DKSRGRKLRMVCISDTHGKHHAIRHKIPDGDILVHCGDFSTKLYQR------DFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNATYLEDSSARVEGLKFYGTPWTNSSHMASFEGRRGGAEGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLG---TTSRNDPCSVCGERHR--SYAHWGSWSLTDRVARLKPKVHVFGHVHNSHGIVRRDE-------TIYINAAQDLNPQPIFLDIW 903
            ++S  R LR+V ISDTH KH      IP GD+LVH GDFS   + R      D+   ++  D+F GSL H+HK+ + GNH++    +T ++I+  + N TYL+D    +EGLKFYG+PWT S   +        A+ F+    +L+  WS +P+D+DVL+THMPP  + D  +       T   DPC  C  R    S  ++GS  L D + R++PK+HVFGHVH ++G+ R          T   NA+ + +P P+  D++
Sbjct:   25 ERSDARVLRIVHISDTHNKHREYAPHIPGGDVLVHSGDFSNFNFFRKWFKEIDYRYELKALDKFFGSLPHKHKIFVAGNHDLNLEKHTSQEIRNNVKNFTYLQDDWIEIEGLKFYGSPWTASRSSSR-------ADAFTEPIEELDSKWSKLPDDIDVLVTHMPPLGIRDKEYIYRGRFKTMSFDPCKFCESRAHPLSVHYFGSKGLLDALKRIRPKIHVFGHVHGTNGVTRLKHNQDGTANTFCSNASMEGHPTPVVYDLF 279
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BLAST of mRNA_A-nodosum_M_contig996.32.1 vs. uniprot
Match: A0A814A372_9BILA (Hypothetical protein n=3 Tax=Rotaria sordida TaxID=392033 RepID=A0A814A372_9BILA)

HSP 1 Score: 186 bits (473), Expect = 2.480e-54
Identity = 104/253 (41.11%), Postives = 146/253 (57.71%), Query Frame = 1 
Query:  181 RGRKLRMVCISDTHGKHHAIRHKIPDGDILVHCGDFSTK-----LYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRL-SNATYLEDSSARVEGLKFYGTPWTNSSHMASFEGRRGGAEGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGER-HRSYAHWGSWSLTDRVA-RLKPKVHVFGHVHNSHGIV---RRDETIYINAAQDLNPQPIFLDIWV 906
            R + + +V +SDTH  H  I   IPDGDI +HCGDF+ +     L        V DF+++LG L H+HK+VI GNHEI F  ++ E+IQ +L SN+ YL+D   +VEG+  YG+ W        F  R        C+       WS+IP D+D+L+THMPP  +LDLAF     +  +PCS+C    H SY HWGS SL   +  R+KP++H FGHVH+ +G       + T++INAA DL  Q   L+ ++
Sbjct:   21 RYKTISVVIVSDTHKNHEKIN--IPDGDIFLHCGDFTNRGDWLNLTNDQIPQSVIDFNQWLGRLTHKHKIVICGNHEIGFEKFSTEEIQSKLLSNSIYLKDDLIQVEGITIYGSSW-------HFNER--------CRAK-----WSSIPSDIDILMTHMPPKFILDLAFQPRKVASTEPCSICNNTVHGSYGHWGSKSLIKEIRQRIKPRIHCFGHVHDDNGYKYDQHENGTLFINAAADLTRQCFKLNFYL 251
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BLAST of mRNA_A-nodosum_M_contig996.32.1 vs. uniprot
Match: A0A816D1C4_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A816D1C4_ADIRI)

HSP 1 Score: 186 bits (472), Expect = 3.610e-54
Identity = 100/252 (39.68%), Postives = 145/252 (57.54%), Query Frame = 1 
Query:  178 SRGRKLRMVCISDTHGKHHAIRHKIPDGDILVHCGDFSTK------LYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRL-SNATYLEDSSARVEGLKFYGTPWTNSSHMASFEGRRGGAEGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGER-HRSYAHWGSWSLTDRVA-RLKPKVHVFGHVHNSHGIVRRDETIYINAAQDLNPQPIFLDIWV 906
            +R +K+ +V +SDTH  H  +   IP+GDIL+HCGDFS +        +      + DF+++LG+L H+HK VIGGNHEI F   + E IQ +L +N  YL+D    VEG+  YG+PW  +    S                     WS+IP+ +DVL+TH+PP  +LDLA+        +PC++C ++ H SY HWGS SL   V  R++P+VH FGHVH+  G    + T++INAA +L  Q   L+ +V
Sbjct:   23 ARYKKVSVVIVSDTHKNHRRLA--IPNGDILLHCGDFSNRHDWYNLSDENPIPKSIVDFNQWLGTLPHQHKFVIGGNHEIGFAQLSLEDIQSKLLTNCKYLQDELVEVEGITIYGSPWPFTQSYRS--------------------KWSSIPDHIDVLMTHVPPQYILDLAYQPKKAPITEPCAMCDDKVHGSYGHWGSRSLKRAVLERIQPRVHCFGHVHDDPGYKYENNTLFINAAANLTHQSFKLNFYV 252
[Close]
BLAST of mRNA_A-nodosum_M_contig996.32.1 vs. uniprot
Match: UPI001E1D9459 (UPF0046 protein C25E10.12-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9459)

HSP 1 Score: 184 bits (468), Expect = 1.400e-53
Identity = 94/258 (36.43%), Postives = 141/258 (54.65%), Query Frame = 1 
Query:  172 DKSRGRKLRMVCISDTHGKHHAIRHKIPDGDILVHCGDFSTKLY-------QRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNATYLEDSSARVEGLKFYGTPWTNSSHMASFEGRRGGAEGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDL-----GTTSRNDPCSVCGERHRSYAHWGSWSLTDRV-ARLKPKVHVFGHVHNSHGIVRRDETIYINAAQDLNPQPIFLDIWV 906
            +K   + +R+V ISDTH +H   +  IPDGDIL+H GDFS           +RD E+V+ + + F   L  +HK+++ GNHE++F+   ++ ++ +L+  TYL+D S  +EGL  YGTPW+ +    S+      A GF+     L   W  IP   D+L+THMPP  +LDL            S NDPC++CG+ H    HWG   L   +  RL+P +H+FGHVH  +G+   D   + NAA  L  +    D ++
Sbjct:   10 EKGEAKVVRIVHISDTHMRHDQYQESIPDGDILIHSGDFSAFSVGRYFGNKERDRESVIREINSFFQKLQFKHKVLVAGNHELSFSDKNKDFVEEQLTEVTYLQDKSITLEGLNIYGTPWS-AKRAVSY------ARGFAKPRQHLHRYWDKIPSQTDILVTHMPPEGILDLGTKTCAGIRNLFSSNDPCNICGDMHEMNEHWGCKELKKTIFKRLRPTLHLFGHVHEGNGVTVADGITFSNAAMKLEEKINVFDYYL 260
[Close]
BLAST of mRNA_A-nodosum_M_contig996.32.1 vs. uniprot
Match: A0A8B8DZA7_CRAVI (UPF0046 protein C25E10.12-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DZA7_CRAVI)

HSP 1 Score: 179 bits (454), Expect = 1.800e-51
Identity = 92/233 (39.48%), Postives = 132/233 (56.65%), Query Frame = 1 
Query:  187 RKLRMVCISDTHGKHHAIRHKIPDGDILVHCGDFSTKLYQRDF------EAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNATYLEDSSARVEGLKFYGTPWTNSSHMASFEGRRGGAEGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGSWSLTDRVAR-LKPKVHVFGHVHNSHGIVRRDETIYINAA 864
            RKLR+V ISDTH +H  I H IP+GD++VH GDFS   ++  F        ++   + F   L HR K+ + GNH+     +++E+I   L    YL+DS    +G+KFYG+PWT SS           ++ F+  G  L   W A+  D DVL+TH PPY VLD +  LG T     C  CG+ H    H G +SL + V + ++PK+H+FGH+H S G+  +D+ I+ NAA
Sbjct:   20 RKLRVVHISDTHMEHDDIIHSIPEGDVIVHSGDFSKMRFKNFFFKDHSDSEMLRKVNSFFEQLPHRFKIFVAGNHDTFLTRFSKEEITESLPAVRYLQDSFTVCDGVKFYGSPWTISSRKIKT------SKAFTAAGEVLRERWGAVDGDTDVLITHTPPYGVLDYSRHLGDTPPKAVCQFCGKGHPDRGHAGCYSLREAVLQTIRPKMHLFGHLHGSAGLTEQDDIIFSNAA 246
[Close]
BLAST of mRNA_A-nodosum_M_contig996.32.1 vs. uniprot
Match: A0A814F8R4_9BILA (Hypothetical protein n=7 Tax=Adineta steineri TaxID=433720 RepID=A0A814F8R4_9BILA)

HSP 1 Score: 179 bits (453), Expect = 2.190e-51
Identity = 96/251 (38.25%), Postives = 139/251 (55.38%), Query Frame = 1 
Query:  187 RKLRMVCISDTHGKHHAIRHKIPDGDILVHCGDFSTK-----LYQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRR-LSNATYLEDSSARVEGLKFYGTPWTNSSHMASFEGRRGGAEGFSCKGTDLEGVWSAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGER-HRSYAHWGSWSLTDRVA-RLKPKVHVFGHVHNSHGIVRRDE---TIYINAAQDLNPQPIFLDIWV 906
            +K+ +V +SDTH  H  +   IPDGDI +HCGDF+ +     L        V DF+++LG L H HKLVI GNHE+ F   + E+IQ + L+N  YL+D   ++E +  YG PWT + H  +                     W +IP  +D+L+TH+PP  +LDLA+     S  +PCS+C    H  Y HWGS SL   +  R++P+VH FGHVH+  G     +   T++INAA DL+ +P   + +V
Sbjct:   23 KKVSIVVVSDTHKNHEKL--SIPDGDIFLHCGDFTNRHDWLNLSPDQIPQSVIDFNQWLGKLSHPHKLVICGNHELGFGKLSHEEIQSKYLTNCKYLKDELIQIEDISIYGCPWTFTEHYRT--------------------KWPSIPSHIDILMTHVPPQFILDLAYQPKALSSTEPCSMCNNTVHGCYGHWGSASLIKEIRQRIQPRVHCFGHVHDDPGHKYDQDDTGTLFINAATDLSNRPFKFNFYV 251
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig996.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJZ4_9PHAE6.640e-17278.86Metallophos domain-containing protein n=1 Tax=Ecto... [more]
D7FHZ7_ECTSI4.880e-12879.00Metallophos domain-containing protein n=1 Tax=Ecto... [more]
A0A7S4MMV8_9EUKA1.110e-7648.68Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A817R4F3_9BILA7.860e-5639.53Hypothetical protein n=6 Tax=Rotaria sp. Silwood2 ... [more]
A0A1S3JYP0_LINUN1.580e-5437.79UPF0046 protein C25E10.12-like isoform X1 n=1 Tax=... [more]
A0A814A372_9BILA2.480e-5441.11Hypothetical protein n=3 Tax=Rotaria sordida TaxID... [more]
A0A816D1C4_ADIRI3.610e-5439.68Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
UPI001E1D94591.400e-5336.43UPF0046 protein C25E10.12-like n=1 Tax=Mercenaria ... [more]
A0A8B8DZA7_CRAVI1.800e-5139.48UPF0046 protein C25E10.12-like n=1 Tax=Crassostrea... [more]
A0A814F8R4_9BILA2.190e-5138.25Hypothetical protein n=7 Tax=Adineta steineri TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig996contigA-nodosum_M_contig996:226251..234870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FHZ7
PFAMsMetallophos
Model size909
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons8
Evalue8.01e-129
EggNOG OGsKOG3947@1|root,KOG3947@2759|Eukaryota
Ec32 ortholog descriptionCalcineurin-like phosphoesterase domain, lpxH type
Ec32 orthologEc-12_006490.2
DescriptionCalcineurin-like phosphoesterase
Cds size909
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig996.32.1prot_A-nodosum_M_contig996.32.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig996 226251..234870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870540.8795977-CDS-A-nodosum_M_contig996:226250..2263701680870540.8795977-CDS-A-nodosum_M_contig996:226250..226370Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 226251..226370 -
1680870540.895284-CDS-A-nodosum_M_contig996:226708..2267661680870540.895284-CDS-A-nodosum_M_contig996:226708..226766Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 226709..226766 -
1680870540.9061384-CDS-A-nodosum_M_contig996:227148..2273181680870540.9061384-CDS-A-nodosum_M_contig996:227148..227318Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 227149..227318 -
1680870540.920434-CDS-A-nodosum_M_contig996:227639..2277571680870540.920434-CDS-A-nodosum_M_contig996:227639..227757Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 227640..227757 -
1680870540.933464-CDS-A-nodosum_M_contig996:228511..2285821680870540.933464-CDS-A-nodosum_M_contig996:228511..228582Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 228512..228582 -
1680870541.023247-CDS-A-nodosum_M_contig996:228861..2289771680870541.023247-CDS-A-nodosum_M_contig996:228861..228977Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 228862..228977 -
1680870541.0369043-CDS-A-nodosum_M_contig996:229267..2293781680870541.0369043-CDS-A-nodosum_M_contig996:229267..229378Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 229268..229378 -
1680870541.0493274-CDS-A-nodosum_M_contig996:234725..2348701680870541.0493274-CDS-A-nodosum_M_contig996:234725..234870Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 234726..234870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig996.32.1

>prot_A-nodosum_M_contig996.32.1 ID=prot_A-nodosum_M_contig996.32.1|Name=mRNA_A-nodosum_M_contig996.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=303bp
DEHARHRSHVAESPSSRSRSRRFEGRQPPRAGAEEQAVSSDGSTIFALRA
PDVVFCGDKSRGRKLRMVCISDTHGKHHAIRHKIPDGDILVHCGDFSTKL
YQRDFEAVVEDFDRFLGSLGHRHKLVIGGNHEIAFNSYTREQIQRRLSNA
TYLEDSSARVEGLKFYGTPWTNSSHMASFEGRRGGAEGFSCKGTDLEGVW
SAIPEDVDVLLTHMPPYNVLDLAFDLGTTSRNDPCSVCGERHRSYAHWGS
WSLTDRVARLKPKVHVFGHVHNSHGIVRRDETIYINAAQDLNPQPIFLDI
WV*
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mRNA from alignment at A-nodosum_M_contig996:226251..234870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig996.32.1 ID=mRNA_A-nodosum_M_contig996.32.1|Name=mRNA_A-nodosum_M_contig996.32.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8620bp|location=Sequence derived from alignment at A-nodosum_M_contig996:226251..234870- (Ascophyllum nodosum dioecious)
GATGAGCACGCCCGTCACCGAAGCCACGTCGCGGAATCTCCGAGCAGTCG
GTCTCGAAGCAGAAGGTTTGAGGGACGGCAGCCGCCGCGAGCAGGAGCAG
AGGAGCAGGCGGTGTCGTCTGATGGTTCGACTATTTTTGCCCTGCGTGAG
TGTTGCGTTTTGAACCCAGTATGACGATCAAGCAGCTGCCGCAACGCGCT
CCATCGTGTCCTGTTCGACTCACTGAGTTTTTTTTTGCGCACAGTTTTTG
TACATGTTTAGCTGTTTTTATTTGCTCTATAATGTCTATAAATGAAGTTC
AACGAAGCCATGCGCACCTTCTTCTGTCTGCGTTTCTGTTTTTCTGTTTT
TCTGTTTTTCGTTTGCTGCTTTTTCTACGCCTCCGCGTGGCACAGAAAAC
TTGCACAAGTATTTATCTGTATTCTGTATACTCCTAGGCCCGACTACATA
TCGCAAAGACCACTTCTCCCTCACACCCACAAAAGTAAAGCCTTAGCCTT
CGACACAACAAAGCGTTAGCCTACATTCCATCAGCTAGAAGCTCACTGTT
GCAACACACAACAAGCAATGCTCGTGAAGGTTGCCAGCCTGTTCGGCAGA
CCAGTTCTCTTCCCGGTCCTCCTCCTGCAGATGGATCCGTCGGACACGTT
TCTCGTGGCGAGCAGAAAGCACAGACCGCATCTCCGCAGTGTCCAGGCAC
CGCCAGTACCTGCGAGGGCCTCATTGAGCCAGGGAGTTGTGATCGGGTAC
CTCGGAACAATGGTGTAGAGGCTGACAGAGGTTTTTCTCGTATGCCGACA
ACAGACATCTTGTACATCGATGCACAAATACGATGAACTACTAAAATACC
AGGCGGGGGCTGATCTTTCGTTAAATACGTAGCTCTATAACAAAAGGTAT
TGTACAATTTCCCAGGATTACGTCTACATCTATACCTACCTGTACATCCC
CTTCAGTTGTTGTTGTTGTTGATTCACACATTCAGCGTATTGTCCTTGCA
ACTGAAGAAACTACGGTGACACAACAAGTCAGCCATAGACCTATCAAATG
CCAATCCCGCTTGTGGTCACAAAGAGGTACGAAGGTCAACGGGTCACATC
ATGGTGACAACCCGCTACTCAGACCAACAGGGATCCAAATCGCGACAAAA
AGTTATGCGGCTCTACAAGCAATGGCACCGACCAATATCAAAACGGTTCA
TCAAACCTCCTTACTCCATATCGAGAGCAACCTCGATCGACTCGGAATGT
TGTCGCCTACCCACGACCAGCGTTCTCAGCAAAAAACCGGAAAAATTACG
CTCCAACCAGTTTTGATCAACAATTCCAAGTTTCTCAAGGCCACACATTT
TGTACAGAAATAAGGAAAATTGAAATACCGAGGTCCATGGTGGTGGAGGC
CTTGAACTGGTGAAGCCGGCGCGCGAGCCAGCCTCCAGCCGTCCAAAGCC
CTGTGCATTCTTGAAAAAACCCACGAATCTTGCCCGTTCGCCGCTCCTTG
TGGTCCTCGTAGGAAGAAAAATGACCGTGGTCAGAGATCAGCTTTTCCCT
CAGAAACCTCCCGGTTCAAGCCTGTGATTCTCGCGCACAGGGGTTCAGCC
CTCCCCTGGCTCGTCAACGATCGAGCTGCCCTCCGCCTTCGCCGAATCTG
GTGCGTACCCACCCGATAGTAGAGTACTACCAGGCTCTCCGCGACAGTGC
TCCCTGCCTCTCGCGTGCCGCCACCCTCCCGAAGGGCCCCAAATTGGGGC
TCGGGAAGAGGCGCGCACCTGGGAACACCATCATCCTCAGCCAACCATAC
CGCCGCCGCGTCTCAACCGACAGGCTGAATCGCGAAGGCAGCCAGTTGGC
TGCATCTCTTGAGGGTGAGCCCGGCCCTACACCCGCCGGAAAGACCCTCC
CACACTCATTCCCCGAAACCAGCAGGTTTCGGAGGGAGCGGGCACGAGAT
GTGACACCCATCCGATCCTAGATGTAATGTAACAAACAGAGTGTAACCCA
AGCTTCCCGTGTATTCTGTGTTTGTGCGATATCCTTGCATGGCAGTTAAT
GATATTGTACAGTATACTAGTGGATTTCTCCCCTACATTTTACTGTTTAC
CCAAGCCCCTATTCTTGTATGGCTCGATGGTATTATTATCGACATTAGTA
CTATCCTCGTAACTATGTACCACAGACAGTGGTTATGTTGGGTTATGATT
GGTGGCTGTGCATGGTGATTAATATAAGTGTACAGCGGTACTTTCAACAT
GCCCACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGAATATTAATT
GGTCCATGGTGATCTGCCAAGGCAGCACCCGTTCGGAACTACCTTGAGGT
TTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGC
AACTGCGTGACCCGATAAACTCGGGACTGACCCGATGGCGTATGGCGGTT
TCATATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACC
AGATTCAGCCTGAGTATGGAGATGAGCAGACTGACGCGGGACGGGACGGC
TGAACCCGTCTCGCGAGACCAAATTCTCAGGCACGCACGGGGACAGGGGA
ACGTTCATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTAC
CCGGTTGATCCATACTCTGCTATATGTGATGACCATACATACATACATAA
CGTTGGGCTTCTCCCCGACATTATACTGTTGACCCAAGGTTACTACCATT
GGGGAACCCGTTTAAATACCATGTAGTGGCTTTGTATTTATAACCTATGT
AATAGTATATTACTACTACCATATGTGATGGTGTACTACATTGTTTCTGG
TTTGTTTTTACTGTTTTTCTGGTGTCCCTTCATGGCGATTAATGTAAATG
TACAGTATAACGGTGGGCTTCTCCCCGACATTATGCTGTTGACCCAATGT
TATTTCCATCGGGGAACCCGTTTGAATGCCGTGAAGAGGTTTTGTATTTG
CAGCCTTTGATCCCACCTAAACGTTTTGACATTTTTTCCCCCATAACTGG
GGTATGCTCAGAAGATCTAGGTCCGTTCTGATTTTTCTTTAAAAGTCAAA
CGTTGTGTTGATTTATCTATTTAGTTGAATTTTTGATCAATTACCGACCA
ATTACCGGTTACAATACAAAATACACTGTATTACTGTAAACGTAACGGAT
TGACTTTTTCGTTCACGGTACGCACCAAAAATAGTACGTCATCGTTATTG
TTACTGTACTTATTTGACTGTATACTTCAACAGTAATCAAACTATATTCA
AAGTGAACACCGAAAAACCGAAAACCGAAAAAATCAGAGGTACTTAGGGC
TTAAGAAAGAGAAGGTACTAGATAGAGGTCACATCGGTTTTTATGTGACA
ACAACAATATTTTAAACATTTAAAACGTCTAGATGCGTTCAGATTTTTCT
TCAAACAGACGCAGCAGTCCTTTTTGCGCTGGTGTTTCAACTTATCGAAA
ATGTAAAGGGAGATACATCATGGAAGAACATTGTAGGATTAATACACACC
TCGTACTGGTACAAGTACAATTCAGTAGTTTTTACAGATTCAGCCTGAGT
ATGGGGATGAGCAGGCTGACGCGGGACGGGACAGCTGAACCCGTCTCGCG
AGACCAAATTCTCAGGCACGCACGGGGACAGGGGAATATTATTTTCCCTG
TTCAGCTGACCACGTGCAGGATTGGCAACCTTACCCGGTTGATCCATACT
CTGCAATATGTGATGACCATACATACATACATACATACTCATGTGTCTTG
AAGCATCCAGTCGAACTCTAATCTAGATTTTTCTCTTTTTCCTGCTCAGC
AGACAGCGAGCGGGATTGACCACCGTGTAAAATAGTTTAATCGGGTTGGC
GACCAATACGCTGAATATGAGAAACATCAACAGTCTAAAGACGACATTCC
ATGGTAGGTACGTGATACAACGGCGCCTTCACCAAGCGTCTGTGAGTTTC
CACACGCCAAAGTTCCAAGAGCTGGCACTACCCTGGAATGAGGAGTAAGA
GTTTTATTTTCTACCTTACCGATTAGAAGTATTCCGACTGCTTGCAGTGT
TCTGTATTACTATAAATAGGGTTGTTACCGCACTGCCTTTTAGTTTTTTA
TACCTGGTATAGACTACAACACGGATAAACTGCCTTTTAGTTTTTTATAC
TTGTACCTGGTATACGGTTCAACACGGAGGAATCCCGTGAGTAAGCACCG
GATTCAGCCTGAGTATGGAGAATGAGCAGGCTGACGCGGGACGGGACGGC
CGAACCCGTCTCGCGAGACGAAATCCTCAGGGGCAGACGGGGGCAGGCAA
CAAATATTTTCCCGTGTTCAGCTGACCACGAGCAGGATTGGCAATTTTAC
CCGGTTGATCCACACTCTCCTATAAATGATGACCATAGTGGGTTGGGCCC
GCCACCAAACATGAAGACCGGAATGCGACGTGTAATGTCACCATCTGCAC
GGGCAGCGCAAAACAACTCTTAATTTACTCCGTAAGTAGTGCTGTCAAGC
CTGCAGGTCTCTCTCTAGCTTGCTCACGCCGGTAGTATTAGTTGCCAGGT
GGCAAAAGTATCAGAATGGGAGTTGTGACCCTGGTTAGTACAGAGCAGTT
CCTCCTAACGAACACCACCATATCTCGGGAATGTGGGCATTATCTACTTC
AAAAGTTGTTTGCTTTTCTCCCCTCAGATATGGAGACGATTCGCCTATTT
ATACGCAGGGCTGCTATGAGCTCCAGCTCCAAGGCGCTCCGACGATCTGA
AGTATGATCGTTAGTCGCAGGGGTCACCCGTATCCCCGGCCTATCTTCTG
CAAAAAAAACACTCATTTTAGGTCCTTTTTTTTTTCTTCTTTCCTACCAT
CGGTGTTAATAGCTCGATACAAATCCGCGATCAATCGGCAACTAAACCAG
CCATCCTGCCTTTCAATGGTAAACTACAACACAGTCAGTGCACATGTACT
TCGTATAATATTATTCTATGATGTTAGTCTATAATGTTAGCTCTATTACA
ACAGTAGCACAAGAAGAATGATGAAGCCCTACCACAGTCAGCATTACATG
CCTCTACAGCGTACCGGGACATATTTGAACGAGGTCGGCTTTATCAGAAA
ACACAGTAGTAGCTTCATTCAGGTCGTATCCTACACAAAATATTTTGCGT
AACCGACTTCAAGACTGACTGTGGTGCAAAGCTTTCACTGCTGATCTAAT
TACCTCTATTCACATGTAAACTCCCGAGGCTCAACTGGTGAAAGAGTTTG
CACAGCTATCCTGAGTTCGATTCTCGAGATAAAACAACGGTTTGGCTTCA
AAACTGCCTCGGAGCCGTTGTTCGCCGGTCTCGTGGTCGCGCACCGCAAC
TTCTTGCCTTCCATATTTTACTGAATTTTGGTTGGTCCCGTTTTGCGACT
TATTCCTGCCCTATCGATTTGACCTATTAATACCTAATTTAGGGGCACCC
GACGTGGTGTTCTGCGGCGACAAGTCTCGCGGGCGTAAGCTGAGGATGGT
ATGCATATCTGACACCCACGGGAAGCACCACGCGATCCGGCACAAGATCC
CAGGTGAAATCGGGCGCAGCTGACGCGGTCAGTGTGAGGGAGTGTGAGTG
AGTCTGCAGTCGGTCAAAAGAGTGTACAAAATTTGACACAGTAGGTTGCA
CTGGCGCCAACTTCACCGTCCGAACCTTTATTCAGTATTGCGGGGACGAA
ATCACGAGCGCGCCTTACCGGCACGCTGCGACCTGGCGCTCGATATAGCT
TGGATAATATTTCGAAATAAAGGGTAGTTTTTAACTTCCCCGAACACTCT
TATTCGTTTAACTTCCGCTGCGCCGCTCGCGCGGAACGTGCAGACGGAGA
TATTCTCGTCCACTGCGGAGACTTTTCCACGAAGCTCTACCAGCGCGACT
TTGAGGCCGTCGTGGAGGACTTCGATCGATTCCTCGGGTCCTTAGGGCAC
AGACACAAGGTAAATGGAGAGGTCCCCGTGGCGTCTTGACGCTGCCGCCT
TGGTGCCCTACCGGACGGGAACTATCTTCCTAGACCTGCGGGACGAGCGC
GTAATACTGAGAGCGGGTTACAGCTGGCTTCCCCATAGATGTCCCATGAG
ATGACGTTTCTTTACGTCCTCGCCCCCACCCCCCGTTCTGGTTGGGCTGG
CGTTTCTTTGCTCTATACGATATTCGTACGTACGTCTCTTGCTGTCTGTT
CTTCACATACGATGCCCTTCTCGCGCGTGGCGCCTCAGCTGGTCATCGGC
GGCAACCACGAGATCGCGTTTAACTCCTACACAAGAGAGCAGATACAGCG
CCGTTTAAGGTGACAGACCCGTGGCCCCGACCGCCTCCACGCTGAGGTTA
CGGCTGCGAACAAGCGCGCGTCCCCCCCCCCATTTGGACGAATCTAACTA
TCGACAGGTCTCCCTACACACTTAAGCTCCATACCTGGTATGTATTTTAT
ACACCTTGACCACCTCCTGATTATGGGAGTGGCTTAGTCCTGCTGAAGTC
TCTCCCTTGCTGAGGACGGTGAACGACAATGACAATCGTGAGGTGCATAG
TACCCGCATGACATGATTTTTTTTTCCAATCATGCGCGTCGATGGTCTCG
TATGGGGCGACTCGAGCACTCTAATACGGGCACGACTCGCAAAACTCTTG
AAACCACAGAGACTGCATACCACCCCGACTGTACCTCTACCGGTCAAAGA
TTTCCAAGATTTATTTTCATCAACAAAGACCGTCCCGAGGAAGCCAGCCA
GCCAGCCAAAGACTTGTACGTGACAGTACTGGCGTCTACCTACCCCGCCG
TCGCTGGCCTTACGGCGAGCGGCGCATCGGCGTCGTCGTCGAGCACATCA
CCGCTCGCGCTGAGTGGAATGCGAACAGTCAAACCCCGGCAGCAGCGCTC
CCTTCACCAGTGCACCAGGGTTGCAAGAGTACCCACCGCGGTCTTGCACA
GGAGCACGCGAAGGAGCGAGATGTGGGGGTGAAGGGTTTTTGCCGCCCTG
TTTTGCACGCCCTCACACTCCGCTTTTGCTTCCATTTTATTTTTCGCCTC
TTTCTACGTGCAGTAACGCCACCTACCTTGAAGATTCGAGCGCCAGGGTC
GAGGGGCTCAAGTTTTACGGGACTCCTTGGACGAATTCCTCCCACATGGC
GAGTTTCGAGGGGAGGAGGGGGGGGGCAGAGGTTGACCGCCAAATTATCG
TGTTTTTTCGCTCGAACAAACGCGCTGATAAATTGTCCGTGGTTACATGG
GTGGAAAAACCAAGCAACTTGTGTATGGTGAATGAATCGCGCGTGCCGGC
GTACAGCCGCCGTGATCTTGCCCGCGCCTTTGCTGTCAGTGTTTGGTGCG
GTCATCAGTGGGAACCTCTGACCGATCCAACGCCGCGCGCAGCCAGATCT
CGCTTCACCCAACTACACAATTTAGTCGCCCGAACCATAATGGGCACATT
CGCCGTCCCTCGCTTCCGCCCACTTGTCGACGCCTTTCCCTCGGTACGGC
AGGGTTTCAGCTGCAAAGGAACAGATCTGGAAGGCGTGTGGTCCGCGATT
CCAGAAGACGTTGACGTTCTGTTGACCCATATGCCGCCCTACAACGTGCT
CGACCTCGCCTTCGACCTTGGCACCACGTCGAGGAACGACCCCTGCTCAG
TCTGCGGGGAGAGACACCGGAGGTCATCCCCCGCGCCACAAGAAGCGAAA
CTTTAGCTAATCTCGTTAGTTGGGCAGAAAGTGAAAACCTCCGACTTTAC
CCGGTGACGTTCGCGGTGTCAGAGAAGGGCGAAGAGCCCCACCCGTGAAG
ATCATATTCTTCGGTCGATGCAGTATTTTGGCCATCTCCGGTAATGAGCT
GTGGTGCTCGTCATCGTAACGGTCACGATGGCTTCACACGCTGCGCTGAC
AGCACACAGCAAACACTTTGATGTGCGGGCCATGACAAAAAAATCTCACC
CTAAAAAAACCGCGCGCCCCTCGCCCGTCTCTGCACCGCACATTTTTATA
CTCGCCCAACAACACTCGGTCGGGGCATGATCGGCTCGTCGTGATGCTGT
GCAGCTATGCTCACTGGGGAAGCTGGAGCCTGACGGACCGTGTCGCGAGG
TTGAAACCAAAGGTGCGTCTTTCCGAACTGTGTGAATATAAGATATCTGA
TCGTGATCGCGGATCCATCCGGGCTTCGTCTTTCAACAGACAGCACACAG
GAATAACGATCGTCGTTTCTTGCAACGAAGGAAACTGGTAAATCAGCTAC
ACAGACAGTTCCTGCCTGCGGGCTGCACGCGTGACGCCGGTTGCAGATTT
GAAAGTTTTTTTGTGCCTGAGAGTAGACCCCTGGTTGCGGGTTATTTGCC
CTCATCCAGACCGTCCAGATGGTGTGCACTCTACCGCTCATTACTTTTGG
CACGTGCGTTGTCTCAAGGGGATGTTCGTATGCCGCCCCCCCCCCCGCAG
GTTCACGTATTTGGTCACGTGCACAATTCCCACGGAATCGTCAGGAGGGA
CGAAACGATATACATAAACGCCGCGCAAGACTTGAACCCCCAACCCATTT
TTTTAGATATTTGGGTCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig996:226251..234870-

>mRNA_A-nodosum_M_contig996.32.1 ID=mRNA_A-nodosum_M_contig996.32.1|Name=mRNA_A-nodosum_M_contig996.32.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=909bp|location=Sequence derived from alignment at A-nodosum_M_contig996:226251..234870- (Ascophyllum nodosum dioecious)
GATGAGCACGCCCGTCACCGAAGCCACGTCGCGGAATCTCCGAGCAGTCG
GTCTCGAAGCAGAAGGTTTGAGGGACGGCAGCCGCCGCGAGCAGGAGCAG
AGGAGCAGGCGGTGTCGTCTGATGGTTCGACTATTTTTGCCCTGCGGGCA
CCCGACGTGGTGTTCTGCGGCGACAAGTCTCGCGGGCGTAAGCTGAGGAT
GGTATGCATATCTGACACCCACGGGAAGCACCACGCGATCCGGCACAAGA
TCCCAGACGGAGATATTCTCGTCCACTGCGGAGACTTTTCCACGAAGCTC
TACCAGCGCGACTTTGAGGCCGTCGTGGAGGACTTCGATCGATTCCTCGG
GTCCTTAGGGCACAGACACAAGCTGGTCATCGGCGGCAACCACGAGATCG
CGTTTAACTCCTACACAAGAGAGCAGATACAGCGCCGTTTAAGTAACGCC
ACCTACCTTGAAGATTCGAGCGCCAGGGTCGAGGGGCTCAAGTTTTACGG
GACTCCTTGGACGAATTCCTCCCACATGGCGAGTTTCGAGGGGAGGAGGG
GGGGGGCAGAGGGTTTCAGCTGCAAAGGAACAGATCTGGAAGGCGTGTGG
TCCGCGATTCCAGAAGACGTTGACGTTCTGTTGACCCATATGCCGCCCTA
CAACGTGCTCGACCTCGCCTTCGACCTTGGCACCACGTCGAGGAACGACC
CCTGCTCAGTCTGCGGGGAGAGACACCGGAGCTATGCTCACTGGGGAAGC
TGGAGCCTGACGGACCGTGTCGCGAGGTTGAAACCAAAGGTTCACGTATT
TGGTCACGTGCACAATTCCCACGGAATCGTCAGGAGGGACGAAACGATAT
ACATAAACGCCGCGCAAGACTTGAACCCCCAACCCATTTTTTTAGATATT
TGGGTCTGA
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