mRNA_A-nodosum_M_contig984.2.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig984.2.2 vs. uniprot
Match: D8LHS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS6_ECTSI) HSP 1 Score: 334 bits (856), Expect = 3.660e-107 Identity = 203/350 (58.00%), Postives = 233/350 (66.57%), Query Frame = 3
Query: 6 GGQDFNEILEEMHPCCQKDVAERTRAAELREELDRVDPSKVAERARKEAFSTSGALSNAQLPQCRRGGRDYPALEEARRAAAAAKAPCWKGKESDERDGCLGEG-----------DSHSDEXXXXXXXXLMYLLDDPELLRMEKVRVEAMQTHAARLKSLRALGFGLHLEVQPSELETVVEGQFRGAGVVVHAYSADSPLCASLDLFLEGKAASYMGTRFVRCLVRPDSTVASKMRIRRVPSLGCYQGGVRVAYTEGLAQFGEGDRVEPGAVQRWLEASGTLEFDPPSLDALRHSGGSA--GHDDAGDEETDGEGGWYDCGLQGCRKSFAHDHFLAAGGEGRGLPPDFDK 1016
G +DF+E LEE HPCCQKD + RA +LR LD+VD S++AERARK AFS+ A P R GG DYPAL EAR AAA + R G+G DS XXXXXXXXL YLLDDPE+ RM ++RVEAM A RL++LRALGFGLH+EV S +E GQFRGAGVV+H Y ADS L ASLDL LE KA SYMGTRFVRC + P+S VA+ MRIRRVP+L CY+GGVR AYTE L+QFG D V+PGAV+RWL ASGTLEFDPP +AL GG G D GD+E E YDCGL GC K+F HDHFLAAGG G LP F +
Sbjct: 26 GEEDFHEFLEETHPCCQKDSEAKARALKLRSALDKVDLSQIAERARKAAFSSGLAGP----PASRSGGGDYPALREAR-AAAXXXXXXDSRNDGAARGAGYGDGIVEGHNNHSRVDSXXXXXXXXXXXXLDYLLDDPEITRMAQMRVEAMHADATRLQNLRALGFGLHIEVPESGVEEASRGQFRGAGVVLHLYDADSELGASLDLLLEAKAGSYMGTRFVRCRLGPESAVAATMRIRRVPALACYKGGVRTAYTEQLSQFGNSDGVDPGAVERWLVASGTLEFDPPDANALCEGGGLGVVGDDGDGDDEESAEAR-YDCGLDGCHKAFKHDHFLAAGGGG--LPKGFGE 367
BLAST of mRNA_A-nodosum_M_contig984.2.2 vs. uniprot
Match: B8C7A0_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7A0_THAPS) HSP 1 Score: 112 bits (279), Expect = 3.530e-23 Identity = 100/338 (29.59%), Postives = 147/338 (43.49%), Query Frame = 3
Query: 102 LDRVDPSKVAERARKEAFSTSGALSNAQLPQCRRGGRDYPALEEARR-----AAAAAKAPCWKGKESDERDGCLGEGDSHSDEXXXXXXXXLMYLLDDP----ELLRMEKVRVEAMQTHAARLKSLRALGFGLHLEVQPSELETVVEGQFRGA--------GVVVHAYSADSPLCASLDLFLEGKAASYMGTRFVRCLVRP------DSTVASKMRIRRVPSLGCYQGGVRVAYTEGLAQFGEGDRVEPGAVQRWLEASGTLEFDPPSLDAL----------------RHSGGSAGHDDAGDEETDGEGGWYDCGLQGCRKSFAHDHFLAAGGEGRGL 998
L + DP AE+ RK+ TS L GR+Y L EA+R ++A G E + + S SD+ YLLD+ + M+ R ++ A + + LR G+G+H ++ PS + + F G+ G VVH Y A SPL SLDL LEG A+ Y GT+FVR L + D + + + +P L + G V+++ GL F +VE GAV++WL +G L PP + A+ H G S + D++ + Y+CG+ GC KSF H H G GL
Sbjct: 57 LHQHDPVAKAEQLRKQQQDTSKISGIYNLDYTDEDGREYELLAEAKREMQMTVEGESEAIIHLGYE-------MKDAGSDSDDEFD-------YLLDEDISNSSEIDMQAQRRAELEAKAEQYQILRQYGYGVHRQIHPSRV--LASAGFGGSCEDGVVPRGAVVHLYDAYSPLSVSLDLCLEGMASRYPGTKFVRGLGKASLLSVNDDDTSHRWKNGHLPMLLALKEGAVVSFSSGLRDFNNAGQVESGAVEQWLGIAGVLSDTPPPMGAVCRVRSEEELRLDNVINLHGGLSCDGMASTDKDAEIVNDRYNCGVDGCNKSFFHQHVGVKNGVQDGL 378
BLAST of mRNA_A-nodosum_M_contig984.2.2 vs. uniprot
Match: A0A7S2UEH1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEH1_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.600e-18 Identity = 105/375 (28.00%), Postives = 155/375 (41.33%), Query Frame = 3
Query: 3 LGGQDFNEILEEMHPCCQKDVAERTRAAELREELDRVDPSKVAERARKEAFSTSGALSNAQLPQC----RRGGRDYPALEEARRAAAAAKAPCWKGKESDERDGCLGEGDSHSDEXXXXXXXXLMYLLD---------------DPELLRMEKVRVEAMQTHAARLKSLRALGFGLHLEVQPSELETVVE---GQFRGAG---VVVHAYSADSPLCASLDLFLEGKAASYMGTRFVRCLVRP----DSTVASKMRIRRV------PSLGCYQGGVRVAYTEGLAQFGE--GDRVEPGAVQRWLEASGTLEFDPPSLD-----------------ALRHSGGSAGHDDAGDEETDGEGGWYDCGLQGCRKSFAHDH 965
L DF I + CC++D + R L L R D +AER R+ LS +C G +YPAL +AR + + K ER+ SD+ YLLD D L ++E R ++ +S G+G+H + P+ + + Q RGA VV+H Y +S L ASLDLFLE A + GT+F+R R +S VA K+ ++V P+L + GV VA+ L + R+EP AVQ WL+ +G L + P +D AL G + + D + Y+CG+ GC K+F+H+H
Sbjct: 16 LDTTDFGGIDPALEDCCRRDAEDTRRKDALTTTLRRHDRVALAERRRRIGRHLLPDLSFGAGCRCCYDPNGDGGEYPALVDARSSNFVTNS--LTEKTDLERENQAHHQPEESDKNDSDDDSEFDYLLDEDLPGSGEGGEANKGDSLLQQLEDDRRAELELAMLHRESAMQHGYGVHRQFAPARVFRAADLMVSQGRGAAAPAVVLHLYETNSMLSASLDLFLEELAMDFGGTKFMRADGRSTIILESDVADKVFPKKVRPSDDLPALVAIRDGVVVAFCPSLNGLADRSSQRIEPRAVQEWLDRAGVLRTELPRIDDLCRIRPEEDALYESMLALSAVGQQIPFQGKNELQGDDDVNIYNCGVPGCNKAFSHEH 388
BLAST of mRNA_A-nodosum_M_contig984.2.2 vs. uniprot
Match: B8C799_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C799_THAPS) HSP 1 Score: 87.4 bits (215), Expect = 9.210e-15 Identity = 74/244 (30.33%), Postives = 106/244 (43.44%), Query Frame = 3
Query: 366 YLLDDP-------ELLRMEKVRVEAMQTHAARLKSLRALGFGLHLEVQPSEL-------ETVVEGQFRGAGVVVHAYSADSPLCASLDLFLEGKAASYMGTRFVRCLVRPDSTVAS------KMRIRRVPSLGCYQGGVRVAYTEGLAQF------GEGDRVEPGAVQRWLEASGTLEFDPPSLDA-----------------LRHSGGSAGHD-DAGDEETDGEGGWYDCGLQGCRKSFAHDH 965
YLLD+ ++ + +E+M H + +R G+G+H ++ P + + + G VVH Y A SPL SLDL LE A+ Y GT+F+R L A K + +P + + G VA++ GL F +RVEP AV++WLE +G L PP +DA L GG + D E YDCG+ GC KSF H+H
Sbjct: 167 YLLDEDIPSSSEYDMQAQRRAELESMAHH---YEVIRFHGYGVHRQMHPKRVFASAGYGSSTDRDRVTVKGSVVHLYDAYSPLSVSLDLCLEDMASRYPGTKFLRGLGVTSLLFAEGDGGDQKWKKGDLPMVVALKEGRVVAFSSGLRDFYNAGGDQHNERVEPRAVEQWLEHAGVLFDTPPQMDAVCRIRPEEEMLLENLMKLNMQGGLINAEAPTRSRVEDMEEQRYDCGVNGCNKSFFHEH 407
BLAST of mRNA_A-nodosum_M_contig984.2.2 vs. uniprot
Match: A0A1E7FG97_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FG97_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 7.510e-7 Identity = 89/366 (24.32%), Postives = 139/366 (37.98%), Query Frame = 3
Query: 39 MHPCCQKDVAERTRAAELREELDRVDPSKVAERARKEAFSTSGALSNAQLPQC--RRGGRDYPALEEARRAAAAAKAPCW-----------------------KGKESDERDGCLGEGDSHSDEXXXXXXXXLMYLLDDPELLRMEKVRVEAMQTHAARLKSLRALGFGLHLEVQPSELETVVEGQFRGAG-------------VVVHAYSADSPLCASLDLFLEGKAASYM-GTRFVRC----LVRPDSTVASKM-------RIRRVPSLGCYQGGVRVAYTEGLAQFGEGDR--VEPGAVQRWLEASGTLEFDPPSLDALRHSGGSAGHDD-----AGDEETDGEGGWYDCGLQGCRKSFAHDH 965
+ CC+++V R L L R D S +AER R+ G+ S+A C G +Y AL E + + KG + +G L + D + + ++D + +E+ R ++ + G+G+H ++ P+ + + G R + VV+H DS ASLD +LE + A GT F+R ++ DS++A K R +P+L + GV V L G +EP AV+ WL+ SG L D P D H D + E Y+CG+ GC KSF H+H
Sbjct: 22 LEDCCRREVEGNRRYNALSSTLRRHDVSALAERRRRHLVKMPGS-SDACRCSCDPESDGGEYRALIEFKEQKLRERQXXXXXXXXXXXXXXXXGGKEEPDIALKGGNKSKNEGPLDDDDGXXSDDEFDYLLDEDFGMEDEMVRELEEQRRAELEYQILMRQIAGYHGYGVHRQMDPNRVLRIA-GLGRDSASNKASSFLPPPSAVVLHLVDPDSTASASLDYYLETELAKECAGTIFLRSGGRSVLLMDSSLAQKSFPSSILDPDRDMPALIAIRDGVVVNACPRLLGLTSGTDGIIEPHAVRHWLDRSGVLLSDAPIQDICMIRPEQEAHMDFVLSNQQKQAPPPEEKRYNCGIDGCHKSFKHEH 385 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig984.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig984.2.2 >prot_A-nodosum_M_contig984.2.2 ID=prot_A-nodosum_M_contig984.2.2|Name=mRNA_A-nodosum_M_contig984.2.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=329bp MHPCCQKDVAERTRAAELREELDRVDPSKVAERARKEAFSTSGALSNAQLback to top mRNA from alignment at A-nodosum_M_contig984:4770..11566- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig984.2.2 ID=mRNA_A-nodosum_M_contig984.2.2|Name=mRNA_A-nodosum_M_contig984.2.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6797bp|location=Sequence derived from alignment at A-nodosum_M_contig984:4770..11566- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig984:4770..11566- >mRNA_A-nodosum_M_contig984.2.2 ID=mRNA_A-nodosum_M_contig984.2.2|Name=mRNA_A-nodosum_M_contig984.2.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=987bp|location=Sequence derived from alignment at A-nodosum_M_contig984:4770..11566- (Ascophyllum nodosum dioecious)back to top |