mRNA_A-nodosum_M_contig98.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig98.16.1
Unique NamemRNA_A-nodosum_M_contig98.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig98.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig98contigA-nodosum_M_contig98:192653..193469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size817
Hectar predicted targeting categoryother localisation
Exons1
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870506.8877616-UTR-A-nodosum_M_contig98:192652..1927371680870506.8877616-UTR-A-nodosum_M_contig98:192652..192737Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig98 192653..192737 -
1680870506.919787-UTR-A-nodosum_M_contig98:193202..1934691680870506.919787-UTR-A-nodosum_M_contig98:193202..193469Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig98 193203..193469 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870506.898739-CDS-A-nodosum_M_contig98:192737..1932021680870506.898739-CDS-A-nodosum_M_contig98:192737..193202Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig98 192738..193202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig98.16.1prot_A-nodosum_M_contig98.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig98 192738..193202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig98.16.1

>prot_A-nodosum_M_contig98.16.1 ID=prot_A-nodosum_M_contig98.16.1|Name=mRNA_A-nodosum_M_contig98.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=155bp
MASSTLAVGAEIFDIGTRKRAATGPVERGQAGHHMPEAFGLPNVTNVRVF
LVEMNNSRKKPLRFHPSVSLHFSAVGCVLVVWLVARNQRVVLQLVLIEVS
NIVLNLIFRSEPLRAQHFTIVRSIPYSKQDVWSAPQSENMFKSFFLPSSP
TGSY*
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mRNA from alignment at A-nodosum_M_contig98:192653..193469-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig98.16.1 ID=mRNA_A-nodosum_M_contig98.16.1|Name=mRNA_A-nodosum_M_contig98.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=817bp|location=Sequence derived from alignment at A-nodosum_M_contig98:192653..193469- (Ascophyllum nodosum dioecious)
AAGTATTTTAACGCCGACTGGGAAGACGTTCAGTTGCCGAGATGCGAGAG
CAAAGATATATATTTCTCGCACCGTTCTCGCACCCGCTAGAGGCACGCCT
CCTGATATACTTGGAACATATCCCACAATCGCGCCGCTTTGAAGGCTGTT
CGAAAGAACTCAGCAACATTTCTGCAGGCCGGCAGAGTAGCGTTCCCTGC
CAAAGAGGGACTTGGGAGAGGGTATTTGTCTCTGGAGAAAAGCAAGCCGC
AGACTAATAGCAGAAAGATGGCATCGTCGACACTCGCAGTGGGAGCAGAA
ATCTTTGACATTGGTACGAGGAAGCGCGCAGCAACAGGTCCTGTAGAACG
AGGACAAGCAGGGCACCACATGCCCGAGGCCTTCGGATTGCCCAATGTGA
CGAATGTGAGAGTATTTCTTGTTGAAATGAATAATTCTAGGAAAAAGCCC
CTCCGGTTTCACCCTTCTGTGAGTCTTCATTTCTCAGCGGTCGGTTGTGT
TCTGGTTGTCTGGTTGGTCGCCAGGAATCAGAGAGTTGTCCTACAGTTAG
TACTAATAGAGGTAAGTAATATTGTCCTAAACTTAATCTTTAGATCTGAG
CCGCTCAGAGCGCAGCATTTTACCATTGTTCGCTCCATCCCGTACTCAAA
GCAAGATGTCTGGAGCGCACCTCAGTCTGAAAACATGTTTAAATCGTTTT
TTCTGCCGTCTTCGCCTACCGGATCGTATTAATCTGTCGAGCCACCCCTG
CAAGTCACGCGCCGAGGTTAGCTCTTACGCGTGAGCTTCAGATGTGGAGA
GCTTGCTCTACCCCTGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig98:192653..193469-

>mRNA_A-nodosum_M_contig98.16.1 ID=mRNA_A-nodosum_M_contig98.16.1|Name=mRNA_A-nodosum_M_contig98.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=465bp|location=Sequence derived from alignment at A-nodosum_M_contig98:192653..193469- (Ascophyllum nodosum dioecious)
ATGGCATCGTCGACACTCGCAGTGGGAGCAGAAATCTTTGACATTGGTAC
GAGGAAGCGCGCAGCAACAGGTCCTGTAGAACGAGGACAAGCAGGGCACC
ACATGCCCGAGGCCTTCGGATTGCCCAATGTGACGAATGTGAGAGTATTT
CTTGTTGAAATGAATAATTCTAGGAAAAAGCCCCTCCGGTTTCACCCTTC
TGTGAGTCTTCATTTCTCAGCGGTCGGTTGTGTTCTGGTTGTCTGGTTGG
TCGCCAGGAATCAGAGAGTTGTCCTACAGTTAGTACTAATAGAGGTAAGT
AATATTGTCCTAAACTTAATCTTTAGATCTGAGCCGCTCAGAGCGCAGCA
TTTTACCATTGTTCGCTCCATCCCGTACTCAAAGCAAGATGTCTGGAGCG
CACCTCAGTCTGAAAACATGTTTAAATCGTTTTTTCTGCCGTCTTCGCCT
ACCGGATCGTATTAA
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