mRNA_A-nodosum_M_contig9672.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9672.7.1
Unique NamemRNA_A-nodosum_M_contig9672.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9672.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9672contigA-nodosum_M_contig9672:5680..6242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size564
Hectar predicted targeting categoryother localisation
Exons1
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870485.9829967-CDS-A-nodosum_M_contig9672:5679..62221680870485.9829967-CDS-A-nodosum_M_contig9672:5679..6222Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9672 5680..6222 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870485.995473-UTR-A-nodosum_M_contig9672:6222..62421680870485.995473-UTR-A-nodosum_M_contig9672:6222..6242Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9672 6223..6242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9672.7.1prot_A-nodosum_M_contig9672.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9672 5680..6222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9672.7.1

>prot_A-nodosum_M_contig9672.7.1 ID=prot_A-nodosum_M_contig9672.7.1|Name=mRNA_A-nodosum_M_contig9672.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=181bp
MKDDEAIKNSSSDDREAGSIEDGEASVPSDTCADDMDEEDSDEFFEAREA
FEDPQDRTEASFSGTVDDAPAVEATVDDVTDYCKVGGGAAAEDPREAASS
SNGDPAVDARNVNAHNVSPSTRTWFEARGLHPQTVTQPPHSLVPGDDHDH
DCTKSTVKTKKPRDNKAEFRAVFGELGDDDK
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mRNA from alignment at A-nodosum_M_contig9672:5680..6242-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9672.7.1 ID=mRNA_A-nodosum_M_contig9672.7.1|Name=mRNA_A-nodosum_M_contig9672.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=563bp|location=Sequence derived from alignment at A-nodosum_M_contig9672:5680..6242- (Ascophyllum nodosum dioecious)
AGGCCAACAACTCCGCCCCGATGAAGGACGACGAGGCTATCAAAAATAGC
AGTAGTGATGATCGTGAGGCGGGCAGCATTGAAGACGGAGAGGCCTCGGT
TCCATCCGACACGTGTGCTGATGACATGGACGAAGAGGATTCGGACGAAT
TCTTCGAAGCCAGAGAAGCTTTTGAGGACCCTCAAGACCGTACCGAGGCG
TCTTTTTCTGGCACTGTCGACGATGCTCCTGCTGTTGAGGCCACAGTTGA
CGATGTAACTGATTACTGTAAAGTTGGTGGTGGTGCAGCTGCTGAGGATC
CGCGAGAAGCTGCTTCAAGTTCCAATGGTGATCCTGCTGTTGATGCGAGG
AATGTGAATGCCCACAACGTGTCGCCTAGTACGCGCACTTGGTTTGAGGC
TCGGGGTCTTCACCCTCAGACTGTTACCCAACCTCCTCACTCGTTGGTAC
CCGGCGATGACCATGACCATGACTGCACAAAAAGTACCGTCAAGACTAAG
AAACCTAGAGACAACAAGGCGGAATTTAGGGCCGTGTTCGGTGAGCTGGG
CGATGATGACAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9672:5680..6242-

>mRNA_A-nodosum_M_contig9672.7.1 ID=mRNA_A-nodosum_M_contig9672.7.1|Name=mRNA_A-nodosum_M_contig9672.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=543bp|location=Sequence derived from alignment at A-nodosum_M_contig9672:5680..6242- (Ascophyllum nodosum dioecious)
ATGAAGGACGACGAGGCTATCAAAAATAGCAGTAGTGATGATCGTGAGGC
GGGCAGCATTGAAGACGGAGAGGCCTCGGTTCCATCCGACACGTGTGCTG
ATGACATGGACGAAGAGGATTCGGACGAATTCTTCGAAGCCAGAGAAGCT
TTTGAGGACCCTCAAGACCGTACCGAGGCGTCTTTTTCTGGCACTGTCGA
CGATGCTCCTGCTGTTGAGGCCACAGTTGACGATGTAACTGATTACTGTA
AAGTTGGTGGTGGTGCAGCTGCTGAGGATCCGCGAGAAGCTGCTTCAAGT
TCCAATGGTGATCCTGCTGTTGATGCGAGGAATGTGAATGCCCACAACGT
GTCGCCTAGTACGCGCACTTGGTTTGAGGCTCGGGGTCTTCACCCTCAGA
CTGTTACCCAACCTCCTCACTCGTTGGTACCCGGCGATGACCATGACCAT
GACTGCACAAAAAGTACCGTCAAGACTAAGAAACCTAGAGACAACAAGGC
GGAATTTAGGGCCGTGTTCGGTGAGCTGGGCGATGATGACAAG
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