mRNA_A-nodosum_M_contig958.29.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig958.29.1 vs. uniprot
Match: D7FWI4_ECTSI (Histone H2A n=3 Tax=Ochrophyta TaxID=2696291 RepID=D7FWI4_ECTSI) HSP 1 Score: 236 bits (601), Expect = 9.980e-75 Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 1
Query: 193 SGKGXXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKRI 591
SGKG XXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKRI
Sbjct: 2 SGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKRI 134
BLAST of mRNA_A-nodosum_M_contig958.29.1 vs. uniprot
Match: A0A7S2GSD6_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GSD6_9STRA) HSP 1 Score: 214 bits (544), Expect = 7.340e-66 Identity = 120/134 (89.55%), Postives = 125/134 (93.28%), Query Frame = 1
Query: 181 SSAQSGKGXXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTK 582
S A SGKG XXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGR+HRFLK V QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK +K
Sbjct: 13 SCAMSGKGGXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKHSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKQSK 146
BLAST of mRNA_A-nodosum_M_contig958.29.1 vs. uniprot
Match: A0A7S2LGK2_9STRA (Histone H2A n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGK2_9STRA) HSP 1 Score: 213 bits (542), Expect = 1.130e-65 Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 1
Query: 193 SGKGXXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTK 582
SGKG XXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGR+HRFLK+ V S QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK+ K
Sbjct: 2 SGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKTSVMSSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSNK 131
BLAST of mRNA_A-nodosum_M_contig958.29.1 vs. uniprot
Match: F0XY44_AURAN (Histone H2A n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0XY44_AURAN) HSP 1 Score: 211 bits (537), Expect = 4.930e-65 Identity = 116/132 (87.88%), Postives = 126/132 (95.45%), Query Frame = 1
Query: 193 SGKGXXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKR 588
SGKG XXXXXXXXXAPTSKKAPQ++S KAGLQFPVGR+HRFLK RV + QRVGAT+AVYTAAILEYLTAEVLELAGNACKDLK+KRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK++KK+
Sbjct: 2 SGKGGKXXXXXXXXXAPTSKKAPQTKSLKAGLQFPVGRLHRFLKLRVTASQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKMKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSKKK 133
BLAST of mRNA_A-nodosum_M_contig958.29.1 vs. uniprot
Match: B7G2A5_PHATC (Histone H2A n=4 Tax=Bacillariophyta TaxID=2836 RepID=B7G2A5_PHATC) HSP 1 Score: 210 bits (534), Expect = 1.490e-64 Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 1
Query: 193 SGKGXXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKK 585
SGKG XXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGR+HRFLK+ VH RVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSL+NK+ K
Sbjct: 2 SGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKNSVHQGHRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLINKSQGK 132
BLAST of mRNA_A-nodosum_M_contig958.29.1 vs. uniprot
Match: B8BS24_THAPS (Histone H2A (Fragment) n=9 Tax=Bacillariophyta TaxID=2836 RepID=B8BS24_THAPS) HSP 1 Score: 207 bits (526), Expect = 1.840e-63 Identity = 104/116 (89.66%), Postives = 109/116 (93.97%), Query Frame = 1
Query: 238 APTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKK 585
APT KKAPQSRSSKAGLQFPVGR+HRFLK V QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK+T K
Sbjct: 10 APTIKKAPQSRSSKAGLQFPVGRVHRFLKKSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSTGK 125
BLAST of mRNA_A-nodosum_M_contig958.29.1 vs. uniprot
Match: K0TER1_THAOC (Histone H2A n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER1_THAOC) HSP 1 Score: 209 bits (531), Expect = 1.840e-63 Identity = 118/131 (90.08%), Postives = 124/131 (94.66%), Query Frame = 1
Query: 193 SGKGXXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKK 585
SGKGXXXXXXXXXXXAPT KKAPQSRSSKAGLQFPVGR+HRFLK+ V QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK+ K
Sbjct: 47 SGKGXXXXXXXXXXXAPTIKKAPQSRSSKAGLQFPVGRVHRFLKNSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSQGK 177
BLAST of mRNA_A-nodosum_M_contig958.29.1 vs. uniprot
Match: A0A835Z1F5_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F5_9STRA) HSP 1 Score: 206 bits (525), Expect = 5.360e-63 Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 1
Query: 250 KKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKK 585
KKAPQSRS +AGLQFPVGRIHRFLKSRV + QRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL++KT KK
Sbjct: 28 KKAPQSRSQRAGLQFPVGRIHRFLKSRVQTQQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLISKTQKK 139
BLAST of mRNA_A-nodosum_M_contig958.29.1 vs. uniprot
Match: A0A482SNT5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNT5_9ARCH) HSP 1 Score: 206 bits (525), Expect = 5.540e-63 Identity = 102/112 (91.07%), Postives = 109/112 (97.32%), Query Frame = 1
Query: 241 PTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKT 576
P SK+APQSRSS+AGLQFPVGRIHRFLK+RVHS QRVGAT+AVYT+AI+EYLTAEVLELAGNACKDLKVKRITPRHL LAIRGDEELDTLIKATIAGGGVIPHIHKSL+NKT
Sbjct: 25 PASKRAPQSRSSRAGLQFPVGRIHRFLKARVHSQQRVGATAAVYTSAIMEYLTAEVLELAGNACKDLKVKRITPRHLLLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKT 136
BLAST of mRNA_A-nodosum_M_contig958.29.1 vs. uniprot
Match: A0A7S3PQG1_9STRA (Histone H2A n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PQG1_9STRA) HSP 1 Score: 203 bits (517), Expect = 4.470e-62 Identity = 103/116 (88.79%), Postives = 109/116 (93.97%), Query Frame = 1
Query: 241 PTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKR 588
PTSKKAPQSRSS+AGLQFPVGR+HRFLK+R+ S RVGAT+AVYTAAILEYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNK K +
Sbjct: 15 PTSKKAPQSRSSRAGLQFPVGRVHRFLKARISSKNRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKGKKTK 130 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig958.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig958.29.1 >prot_A-nodosum_M_contig958.29.1 ID=prot_A-nodosum_M_contig958.29.1|Name=mRNA_A-nodosum_M_contig958.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=143bp MHFVTSSAQSGKGGKGGKGGKGGKAPTSKKAPQSRSSKAGLQFPVGRIHRback to top mRNA from alignment at A-nodosum_M_contig958:258060..259809+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig958.29.1 ID=mRNA_A-nodosum_M_contig958.29.1|Name=mRNA_A-nodosum_M_contig958.29.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1750bp|location=Sequence derived from alignment at A-nodosum_M_contig958:258060..259809+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig958:258060..259809+ >mRNA_A-nodosum_M_contig958.29.1 ID=mRNA_A-nodosum_M_contig958.29.1|Name=mRNA_A-nodosum_M_contig958.29.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=429bp|location=Sequence derived from alignment at A-nodosum_M_contig958:258060..259809+ (Ascophyllum nodosum dioecious)back to top |