mRNA_A-nodosum_M_contig9557.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9557.1.1
Unique NamemRNA_A-nodosum_M_contig9557.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9557.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9557contigA-nodosum_M_contig9557:6176..7442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size998
Hectar predicted targeting categoryother localisation
Exons3
Cds size555
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870460.1804097-UTR-A-nodosum_M_contig9557:6175..62641680870460.1804097-UTR-A-nodosum_M_contig9557:6175..6264Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9557 6176..6264 -
1680870460.2916825-UTR-A-nodosum_M_contig9557:6982..72331680870460.2916825-UTR-A-nodosum_M_contig9557:6982..7233Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9557 6983..7233 -
1680870460.3051107-UTR-A-nodosum_M_contig9557:7339..74421680870460.3051107-UTR-A-nodosum_M_contig9557:7339..7442Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9557 7340..7442 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870460.195757-CDS-A-nodosum_M_contig9557:6264..65111680870460.195757-CDS-A-nodosum_M_contig9557:6264..6511Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9557 6265..6511 -
1680870460.2098973-CDS-A-nodosum_M_contig9557:6674..69821680870460.2098973-CDS-A-nodosum_M_contig9557:6674..6982Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9557 6675..6982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9557.1.1prot_A-nodosum_M_contig9557.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9557 6265..6982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9557.1.1

>prot_A-nodosum_M_contig9557.1.1 ID=prot_A-nodosum_M_contig9557.1.1|Name=mRNA_A-nodosum_M_contig9557.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=185bp
MQQPCERDRCHVIDVHHKFDTQGSVVNFPLPFLCDTCTAAAFVWHYTSLE
VVVFLAHGLQEAQIKPDAEVVYRSRVEEESENTLPSAVDRRCTLMAGPGT
ACCPCLLSCLRYKYYRAEDVSKRRGEDTLPFAVGRRCTVMAGPGMACYVF
LRIRLPGLLFHPSCLFAYKYNRGRVVCLWTRLVR*
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mRNA from alignment at A-nodosum_M_contig9557:6176..7442-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9557.1.1 ID=mRNA_A-nodosum_M_contig9557.1.1|Name=mRNA_A-nodosum_M_contig9557.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1267bp|location=Sequence derived from alignment at A-nodosum_M_contig9557:6176..7442- (Ascophyllum nodosum dioecious)
GCCCTTGCCGCTGTCGGCGATAACGATGAAGAAGAAGACGTCCCTGCCCT
TGCCGCTGGCGGCGATAACGATGAAGAAGAAGACGTCCCTGCCCTTGCCG
CAGGCGGGATGACGATGAAGAAGAAGACATCCCTGCCCTTGCCGCTGGCA
ACGATAACGATGAAGAAGAAAGGGAATAACGATGAAGAAGAAGACGTCCC
TGTCCGCAGGCGGGGATGACGATGAAGAAGAAGACATCCCTGCCCCAGCC
GCTGGCGGGGATCGATGGAGAGGATGAGAGAAGATGTCCACAGATGGCAC
TTCCTGTGGCATCCGCAGCATCTTCGGAACGATCATACGTCTGTATGGTT
TCCTTACATAGATCTCCGATGGATTCGTAGACATTGTAGGCCTTAGTTGG
AGATTTGTTTTTACTCTATCCTGTGAAAGGGAGGCTTTTTACTCTCACTC
TGTAATTTAGATGCAGCAGCCGTGTGAACGGGACCGTTGTCATGTTATTG
ATGTGCATCACAAGTTCGACACTCAGGGGTCTGTAGTAAATTTTCCTTTG
CCTTTTTTATGCGACACGTGCACGGCGGCGGCTTTCGTATGGCATTACAC
TTCCCTAGAAGTAGTTGTGTTTCTTGCTCACGGATTGCAAGAGGCTCAGA
TTAAGCCGGATGCGGAAGTCGTGTACCGAAGTCGTGTCGAAGAGGAGAGC
GAGAATACTCTACCGTCTGCTGTTGATCGACGATGCACCTTGATGGCCGG
TCCTGGCACGGCGTGTTGATGTATTTTTGCCGATTCGTTTGCCCGGTCTT
TTTGTTCCATCCGTCTTGCTTGCTTGCGGTACAAGTACAACAGAGACGCG
TTGTTTGCCTCGACAAGACTTGTTCGATAAGATGGTAATAATATATATGG
CGTGTGATGGAACTGTTTTTTCTTTGTTCCATCCGTGTTTGCTTTCTTGC
TTGCGGTACAAGTACTATAGAGCGGAAGACGTGTCGAAGAGGAGAGGCGA
GGATACTCTACCGTTTGCTGTTGGTCGACGATGCACCGTGATGGCCGGTC
CTGGCATGGCGTGTTATGTATTTTTGCGGATTCGTTTGCCTGGCCTTTTG
TTCCATCCGTCTTGCTTGTTTGCGTACAAGTACAACAGAGGACGCGTTGT
TTGCCTCTGGACAAGACTTGTTCGATAAGATGGTAATAATATATATGGCG
TGTGTGATGGAACTGTTTTTCTTTGTTCCATCCGTGTTGCTTTCTTGCTT
GCGGCACAAGTAGCATA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9557:6176..7442-

>mRNA_A-nodosum_M_contig9557.1.1 ID=mRNA_A-nodosum_M_contig9557.1.1|Name=mRNA_A-nodosum_M_contig9557.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=555bp|location=Sequence derived from alignment at A-nodosum_M_contig9557:6176..7442- (Ascophyllum nodosum dioecious)
ATGCAGCAGCCGTGTGAACGGGACCGTTGTCATGTTATTGATGTGCATCA
CAAGTTCGACACTCAGGGGTCTGTAGTAAATTTTCCTTTGCCTTTTTTAT
GCGACACGTGCACGGCGGCGGCTTTCGTATGGCATTACACTTCCCTAGAA
GTAGTTGTGTTTCTTGCTCACGGATTGCAAGAGGCTCAGATTAAGCCGGA
TGCGGAAGTCGTGTACCGAAGTCGTGTCGAAGAGGAGAGCGAGAATACTC
TACCGTCTGCTGTTGATCGACGATGCACCTTGATGGCCGGTCCTGGCACG
GCGTGTTGTCCGTGTTTGCTTTCTTGCTTGCGGTACAAGTACTATAGAGC
GGAAGACGTGTCGAAGAGGAGAGGCGAGGATACTCTACCGTTTGCTGTTG
GTCGACGATGCACCGTGATGGCCGGTCCTGGCATGGCGTGTTATGTATTT
TTGCGGATTCGTTTGCCTGGCCTTTTGTTCCATCCGTCTTGCTTGTTTGC
GTACAAGTACAACAGAGGACGCGTTGTTTGCCTCTGGACAAGACTTGTTC
GATAA
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