mRNA_A-nodosum_M_contig953.33.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig953.33.1
Unique NamemRNA_A-nodosum_M_contig953.33.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig953.33.1 vs. uniprot
Match: A0A6H5L2J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J7_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.660e-9
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 3 
Query:    3 VKHLYTMYSGPLGNLMTLRGLLKIFRDADLRRRAGLTSAEIKEVFSQANASLKSHAG 173
            V  LY +YSGPL   MTLRGLL++ RDA L+ R GLTS ++K +F QANA L+S  G
Sbjct:  676 VSSLYRIYSGPLLVPMTLRGLLRMARDAGLQERVGLTSEDVKRIFKQANAFLQSRDG 732
[Close]
BLAST of mRNA_A-nodosum_M_contig953.33.1 vs. uniprot
Match: D7FIY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY9_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.910e-8
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 3 
Query:    3 VKHLYTMYSGPLGNLMTLRGLLKIFRDADLRRRAGLTSAEIKEVFSQANASLKSHAG 173
            V  LY  +SGP    MTLRGLL++ RDA L+ R GLTS ++K++F QANA L+S  G
Sbjct:  647 VSSLYRDFSGPSLEPMTLRGLLRMARDAGLQERVGLTSEDVKKMFKQANAFLQSRDG 703
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig953.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2J7_9PHAE1.660e-957.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIY9_ECTSI6.910e-854.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig953contigA-nodosum_M_contig953:279592..280751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIY9
Preferred nameRSPH10B
PFAMsMORN
Model size344
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.07e-07
EggNOG OGsCOG4642@1|root,KOG0231@2759|Eukaryota
DescriptionMORN repeat-containing protein
Cds size324
COG categoryDZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870455.0721025-CDS-A-nodosum_M_contig953:279591..2798041680870455.0721025-CDS-A-nodosum_M_contig953:279591..279804Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 279592..279804 -
1680870455.1535678-CDS-A-nodosum_M_contig953:280620..2807311680870455.1535678-CDS-A-nodosum_M_contig953:280620..280731Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 280621..280731 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870455.1689887-UTR-A-nodosum_M_contig953:280731..2807511680870455.1689887-UTR-A-nodosum_M_contig953:280731..280751Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig953 280732..280751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig953.33.1prot_A-nodosum_M_contig953.33.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig953 279592..280731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig953.33.1

>prot_A-nodosum_M_contig953.33.1 ID=prot_A-nodosum_M_contig953.33.1|Name=mRNA_A-nodosum_M_contig953.33.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=108bp
MYSGPLGNLMTLRGLLKIFRDADLRRRAGLTSAEIKEVFSQANASLKSHA
GAESQGVPQSYSCIYEAPSEDKDVEASSETSDSTRLAEPGRSTTTTAPAV
DLELLDQE
back to top

mRNA from alignment at A-nodosum_M_contig953:279592..280751-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig953.33.1 ID=mRNA_A-nodosum_M_contig953.33.1|Name=mRNA_A-nodosum_M_contig953.33.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1160bp|location=Sequence derived from alignment at A-nodosum_M_contig953:279592..280751- (Ascophyllum nodosum dioecious)
AGGTCAAGCATCTGTATACCATGTACTCGGGTCCGTTAGGCAACCTTATG
ACGCTGAGGGGCCTGTTGAAGATATTCCGCGACGCTGACTTGAGACGACG
AGCGGGATTAACATCCGCGGAGATCAAGGAGGTATCATACCATGCTCCAC
GAGATACCACGGAGTTTCTAGATTTGCTCCGGTGCTTGCCGCGGCCGACG
AATGGTACCATAATATGATAAGTGGAAAGGTCGAGCGCTGCGGCCGTATT
CGCACTGCAACCCCGAAAGCTGACAAGCTGGCAAGTTGAAAAGGAACGTG
ATAACAGGTACTACATTTTCCCCCTGACTGGCGGATGCTCAGAAGATCTA
GATGCGTTCAGATTTCTCTTTAAACAGCATAATCTGTACTGTGCGTATCT
TGGCGACAAGAACAGACTCTCATACCAGCGGGGAACCGAACCTTACCAAA
TCCCATGTGAAGTTTTTGTCCTTAATATATATATACTTCGGTACACGTTA
GCAACTAAACGCTTCGACACATTTCCCGGGATGGTATGGATGCTCGGGAG
GTTTGTGGTGTATGCATCGGGTATGTCCATAGCGCCTAATTTTTTTCTAA
ACCTACTGCTGCTGGTGTGAGCTACGTGTACAGTCCTCTTTCCGAGCACT
GCACGTGTGTGTATGTGGTTGCGAACCCGACGCGTGGTCAGCTGAACACG
AAAAAAAAAAATCCCCGTTCGCGCATGAGAATTTGGTCTCGCGGGACAGA
TGCGTATGGACGTATCCTGTAGTCGTATAAGAAGAGTTTGCGTCCCCGAC
TCACCTTGCGATTTACACGTACTTATACTGTTATACGAACATAGCGTCGC
TATAATAATATACGAAGTAGCTATTATTAACAATGTATACGTCAGAGTCT
TGAGAGTCGAGATCATTCCTTATTCGCTGAATATCACGCACGATCAGGTC
TTCTCGCAAGCGAATGCGTCCCTAAAGAGTCACGCGGGTGCAGAGAGCCA
GGGCGTGCCTCAAAGTTACTCTTGTATTTATGAGGCGCCGTCGGAAGATA
AAGATGTAGAAGCATCATCGGAGACATCGGATTCTACTAGGCTGGCAGAG
CCCGGACGTTCGACGACGACAACAGCACCTGCTGTGGACCTCGAGTTGCT
GGATCAGGAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig953:279592..280751-

>mRNA_A-nodosum_M_contig953.33.1 ID=mRNA_A-nodosum_M_contig953.33.1|Name=mRNA_A-nodosum_M_contig953.33.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at A-nodosum_M_contig953:279592..280751- (Ascophyllum nodosum dioecious)
ATGTACTCGGGTCCGTTAGGCAACCTTATGACGCTGAGGGGCCTGTTGAA
GATATTCCGCGACGCTGACTTGAGACGACGAGCGGGATTAACATCCGCGG
AGATCAAGGAGGTCTTCTCGCAAGCGAATGCGTCCCTAAAGAGTCACGCG
GGTGCAGAGAGCCAGGGCGTGCCTCAAAGTTACTCTTGTATTTATGAGGC
GCCGTCGGAAGATAAAGATGTAGAAGCATCATCGGAGACATCGGATTCTA
CTAGGCTGGCAGAGCCCGGACGTTCGACGACGACAACAGCACCTGCTGTG
GACCTCGAGTTGCTGGATCAGGAG
back to top