mRNA_A-nodosum_M_contig9410.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9410.1.1
Unique NamemRNA_A-nodosum_M_contig9410.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9410.1.1 vs. uniprot
Match: D8LL75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL75_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 5.860e-77
Identity = 108/129 (83.72%), Postives = 121/129 (93.80%), Query Frame = 1
Query:   22 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIPDWHLNERCYGALVGREKKECVRHYGAQQVKVWRRSYDVPPPPIDRSSKLWPGNNPRYKFLAKDGESLVPVHESLKDVMKRSSVYWDEV 408
            Q+LL++ FEFDV+YTSMLKRAIKTAWVVLDEL+QQHVPV  DWHLNERCYGALVGREKKECVR +GA+QVK+WRRS+D+PPPPID+SSKLWPGNNPRYKFL +DGES VP+HESLKDVM RSS YWDEV
Sbjct:   61 QLLLSQEFEFDVIYTSMLKRAIKTAWVVLDELNQQHVPVTTDWHLNERCYGALVGREKKECVRSFGAEQVKIWRRSWDIPPPPIDKSSKLWPGNNPRYKFLMQDGESQVPLHESLKDVMSRSSAYWDEV 189          
BLAST of mRNA_A-nodosum_M_contig9410.1.1 vs. uniprot
Match: A0A6H5L2H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H5_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 5.940e-76
Identity = 110/129 (85.27%), Postives = 121/129 (93.80%), Query Frame = 1
Query:   22 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIPDWHLNERCYGALVGREKKECVRHYGAQQVKVWRRSYDVPPPPIDRSSKLWPGNNPRYKFLAKDGESLVPVHESLKDVMKRSSVYWDEV 408
            Q+LL++ FEFDVVYTSMLKRAIKTAWVVLDEL+QQHVPV  DWHLNERCYGALVGREKKECVR +GA+QVK+WRRS+D+PPPPID+SSKLWPGNNPRYKFL K+GES VPVHESLKDVM RSS YWDEV
Sbjct:  170 QLLLSQEFEFDVVYTSMLKRAIKTAWVVLDELNQQHVPVTADWHLNERCYGALVGREKKECVRSFGAEQVKIWRRSWDIPPPPIDKSSKLWPGNNPRYKFLMKNGESQVPVHESLKDVMSRSSAYWDEV 298          
BLAST of mRNA_A-nodosum_M_contig9410.1.1 vs. uniprot
Match: A0A836CGX1_9STRA (Histidine phosphatase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGX1_9STRA)

HSP 1 Score: 181 bits (460), Expect = 4.510e-54
Identity = 84/127 (66.14%), Postives = 98/127 (77.17%), Query Frame = 1
Query:   22 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIPDWHLNERCYGALVGREKKECVRHYGAQQVKVWRRSYDVPPPPIDRSSKLWPGNNPRYKFLAKDGESLVPVHESLKDVMKRSSVYWD 402
            QVLLA G+EFD++YTS+LKR+IKTAWVV+DEL   HVPV+ DW LNERCYGALVGR KKECVR YG  QVK+WRRS+DV PPPI   S LWPGNN +Y FL +   +L+P  ESL+D   RS   WD
Sbjct:   48 QVLLAAGYEFDIIYTSLLKRSIKTAWVVMDELGLHHVPVVTDWRLNERCYGALVGRNKKECVRVYGEDQVKLWRRSFDVRPPPISEDSSLWPGNNRKYDFLER---ALIPRTESLQDTQARSVDCWD 171          
BLAST of mRNA_A-nodosum_M_contig9410.1.1 vs. uniprot
Match: A0A4R5JU76_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=3 Tax=Candidatus Cloacimonetes TaxID=456828 RepID=A0A4R5JU76_9BACT)

HSP 1 Score: 151 bits (381), Expect = 3.910e-43
Identity = 68/127 (53.54%), Postives = 91/127 (71.65%), Query Frame = 1
Query:   28 LLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIPDWHLNERCYGALVGREKKECVRHYGAQQVKVWRRSYDVPPPPIDRSSKLWPGNNPRYKFLAKDGESLVPVHESLKDVMKRSSVYWDEV 408
            LL  GF+FDV +TS+LKRAI+T W++LDE+ + ++P+  DW LNER YGAL G  K E    YG +QVK+WRRSYDVPPPP+D+    +PG +PRY  L+ +    +PV ESLKD  KR+  +W+EV
Sbjct:   43 LLEAGFDFDVCWTSVLKRAIRTLWIILDEMDRMYLPIHNDWRLNERHYGALQGLNKAETAAKYGEEQVKLWRRSYDVPPPPLDKDDPRYPGKDPRYAHLSPE---QIPVGESLKDTCKRTMPFWEEV 166          
BLAST of mRNA_A-nodosum_M_contig9410.1.1 vs. uniprot
Match: A0A2N2P610_9CHLR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Chloroflexi bacterium HGW-Chloroflexi-10 TaxID=2013724 RepID=A0A2N2P610_9CHLR)

HSP 1 Score: 148 bits (373), Expect = 6.120e-42
Identity = 70/129 (54.26%), Postives = 89/129 (68.99%), Query Frame = 1
Query:   22 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIPDWHLNERCYGALVGREKKECVRHYGAQQVKVWRRSYDVPPPPIDRSSKLWPGNNPRYKFLAKDGESLVPVHESLKDVMKRSSVYWDEV 408
            +VL  EG+ FD+ YTS+LKRAI+T W+VLDEL Q  VPVI DW LNER YGAL G  K E    YG  QVK+WRRSYD+ PPP+++S   +PG++PRYK L+   E  +P  E LKD + R    W++V
Sbjct:   41 EVLKKEGYVFDIAYTSVLKRAIRTLWIVLDELDQMWVPVIRDWRLNERHYGALQGLNKAETAAKYGEDQVKIWRRSYDITPPPLEKSDPRFPGHDPRYKSLS---EEQLPATECLKDTVARFLPMWNDV 166          
BLAST of mRNA_A-nodosum_M_contig9410.1.1 vs. uniprot
Match: I0ANS2_IGNAJ (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=4 Tax=Ignavibacteriaceae TaxID=795749 RepID=I0ANS2_IGNAJ)

HSP 1 Score: 144 bits (363), Expect = 1.960e-40
Identity = 66/127 (51.97%), Postives = 90/127 (70.87%), Query Frame = 1
Query:   22 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIPDWHLNERCYGALVGREKKECVRHYGAQQVKVWRRSYDVPPPPIDRSSKLWPGNNPRYKFLAKDGESLVPVHESLKDVMKRSSVYWD 402
            +VL +EG+ FD+ YTS+LKRAI+T W+VLDE+    +PVI  W LNER YGAL G  K E  + YG +QVK+WRRSYD+ PP +++S   +PG++PRYK L+   ES +P+ E LKD + R   YW+
Sbjct:   41 EVLKSEGYTFDIAYTSVLKRAIRTLWIVLDEMDLMWIPVIRHWRLNERHYGALQGLNKAETAKKYGEEQVKIWRRSYDIQPPALEKSDPRYPGHDPRYKDLS---ESELPLTECLKDTVARFVPYWE 164          
BLAST of mRNA_A-nodosum_M_contig9410.1.1 vs. uniprot
Match: A0A7V2TTS0_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2TTS0_9BACT)

HSP 1 Score: 144 bits (362), Expect = 2.780e-40
Identity = 68/128 (53.12%), Postives = 91/128 (71.09%), Query Frame = 1
Query:   22 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIPDWHLNERCYGALVGREKKECVRHYGAQQVKVWRRSYDVPPPPIDRSSKLWPGNNPRYKFLAKDGESLVPVHESLKDVMKRSSVYWDE 405
            ++L  EGFEFD+VYTS+LKRAI+T  +V+DEL Q  VPVI  W LNER YGAL G  K E    YG +QVK+WRRSYD+PPP ++ S   WPG++ RY+ L+++    +P+ ESLKD + R   YW++
Sbjct:   41 KLLREEGFEFDLVYTSVLKRAIRTMQIVMDELDQMWVPVIRHWRLNERHYGALQGLNKAETAAKYGEEQVKIWRRSYDIPPPALEPSDPRWPGHDRRYRGLSREE---LPLTESLKDTVARFVPYWEQ 165          
BLAST of mRNA_A-nodosum_M_contig9410.1.1 vs. uniprot
Match: F3QHD3_9BURK (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=8 Tax=Proteobacteria TaxID=1224 RepID=F3QHD3_9BURK)

HSP 1 Score: 144 bits (362), Expect = 2.850e-40
Identity = 66/127 (51.97%), Postives = 90/127 (70.87%), Query Frame = 1
Query:   22 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIPDWHLNERCYGALVGREKKECVRHYGAQQVKVWRRSYDVPPPPIDRSSKLWPGNNPRYKFLAKDGESLVPVHESLKDVMKRSSVYWD 402
            ++L AEG+EFD+ YTS+LKRAI+T W+ LD+L   ++PVI DW LNER YGAL G  KKE   ++G +QV +WRRSYDVPPP +++ + +WPG +PRYK +    E L P+ E L D + R   YW+
Sbjct:   41 EILKAEGYEFDLCYTSVLKRAIRTLWITLDKLDAMYLPVIHDWRLNERHYGALQGLNKKETAANFGDEQVLIWRRSYDVPPPALEKDNPMWPGFDPRYKHVP--AEEL-PLTECLADTVARVVPYWE 164          
BLAST of mRNA_A-nodosum_M_contig9410.1.1 vs. uniprot
Match: A0A1V6F903_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=2 Tax=unclassified Candidatus Cloacimonetes TaxID=1047068 RepID=A0A1V6F903_9BACT)

HSP 1 Score: 143 bits (361), Expect = 4.030e-40
Identity = 69/127 (54.33%), Postives = 87/127 (68.50%), Query Frame = 1
Query:   28 LLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIPDWHLNERCYGALVGREKKECVRHYGAQQVKVWRRSYDVPPPPIDRSSKLWPGNNPRYKFLAKDGESLVPVHESLKDVMKRSSVYWDEV 408
            L  EGF FD  +TS LKRAI+T W+VLDE+   H+PV  DW LNER YGAL G  K E    YG +QV +WRRSYDVPPP +++S   WPG+ PRY  L + G+  +P+ ESLKD  KR+  +W+EV
Sbjct:   43 LKQEGFTFDEAWTSTLKRAIRTLWIVLDEMDLMHLPVHNDWRLNERHYGALQGLNKAETATKYGEEQVMLWRRSYDVPPPSLEKSDPRWPGHEPRYANL-QPGD--IPLAESLKDTCKRTLPFWEEV 166          
BLAST of mRNA_A-nodosum_M_contig9410.1.1 vs. uniprot
Match: A0A7C6A1Q7_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Candidatus Solibacter sp. TaxID=2068625 RepID=A0A7C6A1Q7_9BACT)

HSP 1 Score: 143 bits (361), Expect = 4.720e-40
Identity = 65/128 (50.78%), Postives = 87/128 (67.97%), Query Frame = 1
Query:   22 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIPDWHLNERCYGALVGREKKECVRHYGAQQVKVWRRSYDVPPPPIDRSSKLWPGNNPRYKFLAKDGESLVPVHESLKDVMKRSSVYWDE 405
            ++L  EGF FD+ +TS+LKRAI+T W+V DE+    +PV   W LNER YGAL G  K E    +G +QV +WRRSYD+PPPP+++S   WPG++PRY+ L    E L+PV E LKD ++R   YW E
Sbjct:   41 RILKREGFTFDLAFTSVLKRAIRTLWIVQDEMDLMWIPVQISWRLNERMYGALQGLNKAEMAEKFGEEQVLLWRRSYDIPPPPLEKSDPRWPGHDPRYRNLP---EHLIPVTECLKDTVERFLPYWHE 165          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9410.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL75_ECTSI5.860e-7783.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2H5_9PHAE5.940e-7685.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGX1_9STRA4.510e-5466.14Histidine phosphatase superfamily n=1 Tax=Tribonem... [more]
A0A4R5JU76_9BACT3.910e-4353.542,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A2N2P610_9CHLR6.120e-4254.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
I0ANS2_IGNAJ1.960e-4051.972,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A7V2TTS0_9BACT2.780e-4053.132,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
F3QHD3_9BURK2.850e-4051.972,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A1V6F903_9BACT4.030e-4054.332,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A7C6A1Q7_9BACT4.720e-4050.782,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9410contigA-nodosum_M_contig9410:11862..12977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LL75
PFAMsHis_Phos_1
Model size408
Max annot lvl2759|Eukaryota
KEGG rclassRC00536
KEGG koko:K01834
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230
KEGG ModuleM00001,M00002,M00003
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.6e-78
EggNOG OGsCOG0588@1|root,KOG0235@2759|Eukaryota
EC5.4.2.11
Descriptionregulation of pentose-phosphate shunt
Cds size408
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870436.8495293-CDS-A-nodosum_M_contig9410:11861..120891680870436.8495293-CDS-A-nodosum_M_contig9410:11861..12089Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9410 11862..12089 +
1680870436.8624687-CDS-A-nodosum_M_contig9410:12797..129771680870436.8624687-CDS-A-nodosum_M_contig9410:12797..12977Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9410 12798..12977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9410.1.1prot_A-nodosum_M_contig9410.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9410 11862..12977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9410.1.1

>prot_A-nodosum_M_contig9410.1.1 ID=prot_A-nodosum_M_contig9410.1.1|Name=mRNA_A-nodosum_M_contig9410.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=136bp
ANPFYLSQVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIPDW
HLNERCYGALVGREKKECVRHYGAQQVKVWRRSYDVPPPPIDRSSKLWPG
NNPRYKFLAKDGESLVPVHESLKDVMKRSSVYWDEV
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mRNA from alignment at A-nodosum_M_contig9410:11862..12977+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9410.1.1 ID=mRNA_A-nodosum_M_contig9410.1.1|Name=mRNA_A-nodosum_M_contig9410.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1116bp|location=Sequence derived from alignment at A-nodosum_M_contig9410:11862..12977+ (Ascophyllum nodosum dioecious)
GCCAACCCTTTTTATCTTTCTCAGGTTCTCCTGGCGGAGGGATTCGAGTT CGACGTCGTTTACACGTCGATGTTAAAGCGCGCCATCAAGACGGCGTGGG TGGTGCTCGACGAACTCAGCCAGCAGCACGTGCCGGTGATACCGGACTGG CACCTTAACGAGAGATGCTACGGTGCGCTTGTCGGGAGGGAGAAGAAAGA GTGCGTTCGACACTACGGGGCGCAGCAGGTGGGGTTTCCATTCTTACAAA CACTTTGTGCTCATTAGTTGCAGAGGCGTTTACCCCACCCCGCCGCCCCC GCTCCCGTCCTTTCAGGATTCATACTTGCCTACTCTACTGCACTGTTTGA ACAAGTGTTTCGTGAATCGAGGTCGTGCCGACAGCGTTTTCGCAAAAGAA TCCTGCCTCCCGCGGACATAGACAGATGCACTCTGCTGTCATATCCATCC TCCCACGTCCCCGGATGCTAGAGTCTTCAGTATACTCTTCTGTATCGCGG TTCTCGTGTCGCTGTTGCGAAATCACGTATCCGCTGTTGCGAATCGAATG ACCCCACCCCCACTGCCCCCAGCAGTATTAATAGTACTATGACCTCAGAA TACCAGGTAGCTCTACCACTGTTTTCAGGTTTTTGTTCCGAAGACAATCG TCTTCGTCGCCAATCCGTGTTTCAACTGGTACATACTGCTCGTCCATAGC TTGGACATAtTTGCCTGTCCAAATATTCCTTAATTTGACGTTAAATTTAT TTTATTTTTTGTTTCTGGTCCATGATTTTTTTGTTGTCCCCTCCCCCACG TCTTCCACCCCCATCACGTACAAACTGTATGCATCTGTCTTTTCGCTACT CTTTCCAACCGATACAGAAGATACTCGCATGTCCCTTGTTCAACGGCATC TCCCATACACTAAAACCCCTTGGTTGCGTGTTGCAGGTGAAGGTGTGGAG GAGGTCTTacGACGTGCCTCCGCCGCCGATAGACCGCTCGAGCAAGCTCT GGCCGGGGAACAACCCCCGGTACAAATTTCTGGCGAAAGACGGCGAGAGC CTCGTCCCCGTGCACGAGTCCCTCAAAGACGTAATGAAGAGATCGTCGGT CTACTGGGACGAGGTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9410:11862..12977+

>mRNA_A-nodosum_M_contig9410.1.1 ID=mRNA_A-nodosum_M_contig9410.1.1|Name=mRNA_A-nodosum_M_contig9410.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at A-nodosum_M_contig9410:11862..12977+ (Ascophyllum nodosum dioecious)
GCCAACCCTTTTTATCTTTCTCAGGTTCTCCTGGCGGAGGGATTCGAGTT
CGACGTCGTTTACACGTCGATGTTAAAGCGCGCCATCAAGACGGCGTGGG
TGGTGCTCGACGAACTCAGCCAGCAGCACGTGCCGGTGATACCGGACTGG
CACCTTAACGAGAGATGCTACGGTGCGCTTGTCGGGAGGGAGAAGAAAGA
GTGCGTTCGACACTACGGGGCGCAGCAGGTGAAGGTGTGGAGGAGGTCTT
acGACGTGCCTCCGCCGCCGATAGACCGCTCGAGCAAGCTCTGGCCGGGG
AACAACCCCCGGTACAAATTTCTGGCGAAAGACGGCGAGAGCCTCGTCCC
CGTGCACGAGTCCCTCAAAGACGTAATGAAGAGATCGTCGGTCTACTGGG
ACGAGGTA
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