mRNA_A-nodosum_M_contig932.15.3 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig932.15.3 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE) HSP 1 Score: 304 bits (778), Expect = 4.210e-84 Identity = 175/272 (64.34%), Postives = 205/272 (75.37%), Query Frame = 3
Query: 3051 GARRVLLEVMEDKGAGKASLKVKRLCALLDPRRKALGAD*LVNGSAALRTRAEEDLNGVITEFADAQTQPSTPVPAPVLDVEPAEPAPKKKRLSRL*ERREARVRTAAGGGGNSGSAEPQAAVTGQRVLIGREVLVYLAEQGQLDVDAFNLLGFWNRRGTDSVCPTTSTVTSPAEMSYLASITRSYYGIEATSCQAERKFSALAHLIGDLRSSMLARKVERKMFIGLNRHSIDEVRELDAAVA*ARARVAKSA*ISAVAQEERSNMSVDLTV 3866
G VLL+VME+K GKA +V+RL AL+DPRRK+L L NGSA LR +AEEDL VI +F D Q P PAPVL+V+P EPA K+K+LSRL ERR ARV AA GG SGS + Q + T +RVLI REVLVYLAE Q++VD FN+LGFWNRRGTDSVC TT VTSPAEM YLA I R + GIEA+SCQAER FSAL+HLIG LR +ML+RKVER M I LNRH +DEVRELDAAV+ ARA+ AKSA S QEER+N S+DL++
Sbjct: 565 GVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEEDLKAVIAQF-DVQPSEPAPAPAPVLNVDPVEPASKRKKLSRLEERRAARV-AAASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKSAQKSVACQEERANKSIDLSL 834
BLAST of mRNA_A-nodosum_M_contig932.15.3 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE) HSP 1 Score: 284 bits (727), Expect = 2.960e-80 Identity = 169/272 (62.13%), Postives = 193/272 (70.96%), Query Frame = 3
Query: 3051 GARRVLLEVMEDKGAGKASLKVKRLCALLDPRRKALGAD*LVNGSAALRTRAEEDLNGVITEFADAQTQPSTPVPAPVLDVEPAEPAPKKKRLSRL*ERREARVRTAAGGGGNSGSAEPQAAVTGQRVLIGREVLVYLAEQGQLDVDAFNLLGFWNRRGTDSVCPTTSTVTSPAEMSYLASITRSYYGIEATSCQAERKFSALAHLIGDLRSSMLARKVERKMFIGLNRHSIDEVRELDAAVA*ARARVAKSA*ISAVAQEERSNMSVDLTV 3866
G R+VLLEVME+KG GKA +V+RL ALLDPRRK L A + NG LR AE DL I F A++ P TP PAPV+DV+PAEPA KKK+ SR+ E + PQ VTG+ VLI REVLVYLAEQ Q+DVD FNL+GFWNRRGT+SVCPTT VT+PAEM YLA I R + GIEATSCQAER FSALAHLIG LR +MLARKVER M I LNRH + EVR LDAAVA ARA AKSA S +AQ +RSN +DLT+
Sbjct: 260 GVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKFIATFT-AESVPPTPAPAPVVDVQPAEPALKKKKFSRI-EEXXXXXXXXXXXXXXXXTVAPQTPVTGRHVLIEREVLVYLAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLLAEVRALDAAVAQARAMAAKSARESGIAQADRSNKEIDLTL 529
BLAST of mRNA_A-nodosum_M_contig932.15.3 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE) HSP 1 Score: 293 bits (749), Expect = 4.070e-80 Identity = 170/266 (63.91%), Postives = 195/266 (73.31%), Query Frame = 3
Query: 3063 VLLEVMEDKGAGKASLKVKRLCALLDPRRKALGAD*LVNGSAALRTRAEEDLNGVITEFADAQTQPSTPVPAPVLDVEPAEPAPKKKRLSRL*ERREARVRTAAGGGGNSGSAEPQAAVTGQRVLIGREVLVYLAEQGQLDVDAFNLLGFWNRRGTDSVCPTTSTVTSPAEMSYLASITRSYYGIEATSCQAERKFSALAHLIGDLRSSMLARKVERKMFIGLNRHSIDEVRELDAAVA*ARARVAKSA*ISAVAQEERSNMSVDL 3860
VL E M +KG G A + V+RL AL+DPRRK+L +D L NGSA LR +AE+DL VI +F D + P PAPV++++P EPAPKKK+LSRL ERR ARV A GG +GS E Q+ T +RVLI REVLVYLAE QLDVD FN+LG+WNRRGTDSV TT VTSPAEM YLA I R Y GIEATSCQAER FSALAHLIG LR +ML KVER MFI LNRH + EVRELDAAV A+A K A S AQEER+N +VDL
Sbjct: 580 VLQEKMREKGMGSAQVAVERLSALMDPRRKSLDSDQLENGSADLRKKAEDDLKAVIAKF-DVGPATAAPAPAPVMNLDPVEPAPKKKKLSRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQEERANQTVDL 844
BLAST of mRNA_A-nodosum_M_contig932.15.3 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE) HSP 1 Score: 286 bits (731), Expect = 1.820e-79 Identity = 167/266 (62.78%), Postives = 193/266 (72.56%), Query Frame = 3
Query: 3063 VLLEVMEDKGAGKASLKVKRLCALLDPRRKALGAD*LVNGSAALRTRAEEDLNGVITEFADAQTQPSTPVPAPVLDVEPAEPAPKKKRLSRL*ERREARVRTAAGGGGNSGSAEPQAAVTGQRVLIGREVLVYLAEQGQLDVDAFNLLGFWNRRGTDSVCPTTSTVTSPAEMSYLASITRSYYGIEATSCQAERKFSALAHLIGDLRSSMLARKVERKMFIGLNRHSIDEVRELDAAVA*ARARVAKSA*ISAVAQEERSNMSVDL 3860
VL E M +KG G A + V+RL AL+DPR ++L +D L NGSA LR +AE+DL VI +F D + P PAPV++++ EPAPKKK+LSRL ERR ARV A GG +GS E Q+ T +RVLI REVLVYLAE QLDVD FN+LG+WNRRGTDSV TT VTSPAEM YLA I R Y GIEATSCQAER FSALAHLIG LR +ML KVER MFI LNRH + EVRELDAAV A+A K A S AQEER+N +VDL
Sbjct: 385 VLQEKMREKGVGSAQVAVERLSALMDPRLRSLDSDQLENGSADLRKKAEDDLKAVIAKF-DVGPATAAPAPAPVMNLDRVEPAPKKKKLSRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQEERANQTVDL 649
BLAST of mRNA_A-nodosum_M_contig932.15.3 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE) HSP 1 Score: 256 bits (653), Expect = 1.540e-73 Identity = 146/224 (65.18%), Postives = 171/224 (76.34%), Query Frame = 3
Query: 3195 RTRAEEDLNGVITEFADAQTQPSTPVPAPVLDVEPAEPAPKKKRLSRL*ERREARVRTAAGGGGNSGSAEPQAAVTGQRVLIGREVLVYLAEQGQLDVDAFNLLGFWNRRGTDSVCPTTSTVTSPAEMSYLASITRSYYGIEATSCQAERKFSALAHLIGDLRSSMLARKVERKMFIGLNRHSIDEVRELDAAVA*ARARVAKSA*ISAVAQEERSNMSVDLTV 3866
+ +AEEDL VI +F D Q P PAPVL+V+P EPA K+K+LSRL ERR ARV AA GG SGS + Q + T +RVLI REVLVYLAE Q++VD FN+LGFWNRRGTDSVC TT VTSPAEM YLA I R + GIEA+SCQAER FSAL+HLIG LR +ML+RKVER M I LNRH +DEVRELDAAV+ ARA+ AKSA S QEER+N S+DL++
Sbjct: 48 KKKAEEDLKAVIAQF-DVQPSEPAPAPAPVLNVDPVEPASKRKKLSRLEERRAARV-AAASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKSAQKSVACQEERANKSIDLSL 269
BLAST of mRNA_A-nodosum_M_contig932.15.3 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE) HSP 1 Score: 256 bits (655), Expect = 2.460e-69 Identity = 158/271 (58.30%), Postives = 191/271 (70.48%), Query Frame = 3
Query: 3060 RVLLEVMEDKGAGKASLKVKRLCALLDPRRKALGAD*LVNGSAALRTRAEEDLNGVITEFADAQTQPSTPVPAPVLDVEPAEPAPKKKR-LSRL*ERREARVRTAAGGGGNS-GSAEPQAAVTGQRVLIGREVLVYLAEQGQLDVDAFNLLGFWNRRGTDSVCPTTSTVTSPAEMSYLASITRSYYGIEATSCQAERKFSALAHLIGDLRSSMLARKVERKMFIGLNRHSIDEVRELDAAVA*ARARVAKSA*ISAVAQEERSNMSVDLTV 3866
+VL E+M++KG GKA +V+RL LLDPRRK L L NGS+ L+T+AE DL +FA ++ PSTP PAPV++V+ AEPA KKK SRL G+ +PQAA TG+RVLI RE+LVYLAEQ Q+DVD FNLLGFWNRRGTDSV T VTSPAEM YLA I R + GIEATSCQAER FSALAHLIGDL +ML+ +VER M + LN+H + EVR DAAVA ARA A SA SAVAQEER+N ++D+++
Sbjct: 378 QVLREMMDEKGVGKALQRVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLKAFTGKFAQ-ESAPSTPAPAPVVNVDTAEPARKKKXPTSRLEXXXXXXXXXXXXXXXXXXGTTDPQAAGTGRRVLIEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLLAEVRAYDAAVAWARAMAANSAEKSAVAQEERANTAIDVSL 647
BLAST of mRNA_A-nodosum_M_contig932.15.3 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE) HSP 1 Score: 239 bits (610), Expect = 1.930e-63 Identity = 127/182 (69.78%), Postives = 144/182 (79.12%), Query Frame = 2
Query: 2216 TMNQGGNVVNACVALGVEVIKCNCHHVNSAVLWSLGISGSAARC*NKAKGELVKKLTACVGDFSHSAVNNDMLKELQKLE-DLHRIHELIRRNDTRWTSQFKMMDRLLALKKPISEYFR-------QHPQNARKLTSHEWIVTNEVCNLLDDISEATIRMQGAGDTHVSQAMFIMTKVIAML 2737
T++QG NVVNAC ALGV V++CNCH VNSAVLW+LGI+GS C NK +KKL A VG FSHSAVNNDMLKELQ+LE DLHRI+E IRRNDTRWTSQ KMM RLL LKKPISEYFR Q+ Q RKLT+HEW VTNEVC+LL+ +SE TIRMQGA DTH+SQA FI+ +VI ML
Sbjct: 175 TVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKNKP----MKKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTRWTSQQKMMGRLLILKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATDTHLSQATFIINEVIDML 352
BLAST of mRNA_A-nodosum_M_contig932.15.3 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE) HSP 1 Score: 223 bits (569), Expect = 4.700e-60 Identity = 112/176 (63.64%), Postives = 141/176 (80.11%), Query Frame = 2
Query: 2216 TMNQGGNVVNACVALGVEVIKCNCHHVNSAVLWSLGISGSAARC*NKAKGELVKKLTACVGDFSHSAVNNDMLKELQKLED-LHRIHELIRRNDTRW-TSQFKMMDRLLALKKPISEYFRQHPQNARKLTSHEWIVTNEVCNLLDDISEATIRMQGAGDTHVSQAMFIMTKVIAML 2737
T++QG N++NAC AL V V++CNCH VN+AV+W+LGI+ + N G L+KKL A VG FSHSAVNND LKELQ+LE+ RI+EL+RRNDTRW TSQ KMMDR LALKKPISE+F+++PQN RKLT +EW + NEVC+LL D+SE TIR+QG+ DTH+ QAMFI+ +VI ML
Sbjct: 15 TVDQGKNIINACTALDVTVVECNCHRVNTAVVWALGIAAKGRK--NPTMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTRWWTSQLKMMDRALALKKPISEFFKKYPQNDRKLTPNEWTIINEVCSLLADVSEITIRVQGSVDTHIGQAMFIIHEVIEML 188
BLAST of mRNA_A-nodosum_M_contig932.15.3 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE) HSP 1 Score: 226 bits (576), Expect = 6.740e-60 Identity = 118/183 (64.48%), Postives = 140/183 (76.50%), Query Frame = 2
Query: 2216 TMNQGGNVVNACVALGVEVIKCNCHHVNSAVLWSLGISGSAARC*NKAKGELVKKLTACVGDFSHSAVNNDMLKELQKLE-DLHRIHELIRRNDTRWTSQFKMMDRLLALKKPISEYFR-------QHPQNARKLTSHEWIVTNEVCNLLDDISEATIRMQGAGDTHVSQAMFIMTKVIAMLK 2740
T++QG N+VNA ALGV V++CNCH VNSAVLW+LGI+G A C NK G+L+KKL A VG FSHSAVNNDMLKE+Q+LE DLHR++E WTSQF+MM RLL L K I+EYFR QH Q RKLT+HEW VTNEVC+LLD +SEATIRMQGA DTH+SQA FI+ +V+ MLK
Sbjct: 172 TVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLMGDLMKKLAASVGVFSHSAVNNDMLKEIQRLEADLHRVYE--------WTSQFRMMVRLLILNKAINEYFRRLAQQNPQHKQLKRKLTAHEWTVTNEVCSLLDTVSEATIRMQGAADTHISQATFIVHEVMEMLK 346
BLAST of mRNA_A-nodosum_M_contig932.15.3 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE) HSP 1 Score: 212 bits (539), Expect = 7.770e-59 Identity = 128/221 (57.92%), Postives = 153/221 (69.23%), Query Frame = 3
Query: 3078 MEDKGAGKASLKVKRLCALLDPRRKALGAD*LVNGSAALRTRAEEDLNGVITEFADAQTQPSTPVPAPVLDVEPAEPAPKKKR-LSRL*ERREARVRTAAGGGGNS-GSAEPQAAVTGQRVLIGREVLVYLAEQGQLDVDAFNLLGFWNRRGTDSVCPTTSTVTSPAEMSYLASITRSYYGIEATSCQAERKFSALAHLIGDLRSSMLARKVERKMFIGLN 3734
M++ G GKA +V+RL LLDPRRK L L NGS+ L+T+ E DL I +FA ++ PSTP PAPV++V+ A+PA KKK+ SRL G+ +PQAA TG+RVLI RE+LVYLAEQ Q+DVD FNLLGFWNRRGTDSV T VTSPAEM YLA I R + GIEATSCQAER FSALAHLIGD R +ML+ +VER M + LN
Sbjct: 1 MDENGVGKALQRVERLFVLLDPRRKTLDDTHLRNGSSDLKTQVEADLKAFIGKFAQ-ESAPSTPAPAPVVNVDTADPARKKKKPTSRLEXXXXXXXXXXXXXXXXXXGTTDPQAAGTGRRVLIEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig932.15.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig932.15.3 >prot_A-nodosum_M_contig932.15.3 ID=prot_A-nodosum_M_contig932.15.3|Name=mRNA_A-nodosum_M_contig932.15.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=280bp MKPKRKLVKELNLCVLFGALVMMTTLEKATAFGSNHVSPKPRSSARANPPback to top mRNA from alignment at A-nodosum_M_contig932:132761..143199- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig932.15.3 ID=mRNA_A-nodosum_M_contig932.15.3|Name=mRNA_A-nodosum_M_contig932.15.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=10439bp|location=Sequence derived from alignment at A-nodosum_M_contig932:132761..143199- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig932:132761..143199- >mRNA_A-nodosum_M_contig932.15.3 ID=mRNA_A-nodosum_M_contig932.15.3|Name=mRNA_A-nodosum_M_contig932.15.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at A-nodosum_M_contig932:132761..143199- (Ascophyllum nodosum dioecious)back to top |