mRNA_A-nodosum_M_contig930.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig930.14.1
Unique NamemRNA_A-nodosum_M_contig930.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig930.14.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.620e-20
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 HDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENNFYDNTISNTETGVKIKEADNTIIT 243
            HDN    V++GIR+SLG G N+VYDN F++CS +GLYTY GSD P+ S+ GRP  N F +N ++N+  GVK K +DN ++T
Sbjct:  328 HDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSN-GRPNGNTFNNNKVTNSAGGVKFKNSDNIVVT 407          
BLAST of mRNA_A-nodosum_M_contig930.14.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.020e-19
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 HDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAP-EASSDGRPGENNFYDNTISNTETGVKIKEADNTIIT 243
            ++N F++VK+GIR+SLG   N+V++N+F++ S  GLYTYQGSD P +  SDGRP +N F +N I N   GVKIKE D+T+IT
Sbjct:  383 YNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVIT 464          
BLAST of mRNA_A-nodosum_M_contig930.14.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 7.540e-19
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 HDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENNFYDNTISNTETGVKIKEADNTI 237
            +DN   N KYGIR+SLG G+N++ +N FD  S+YGLYTY+GSD+P+ S+ GRP  N F  NT+SNT+ GV  KE D+ I
Sbjct:  554 YDNRIVNCKYGIRLSLGSGDNDITNNTFDNISKYGLYTYKGSDSPDVSN-GRPKGNKFEGNTVSNTKIGVLGKEGDDNI 631          
BLAST of mRNA_A-nodosum_M_contig930.14.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.040e-18
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 HDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSD--GRPGENNFYDNTISNTETGVKIKEADNTIIT 243
            HDNTFTNVKYGIR+S+G   N V +N F EC QYG+YTYQG+D PEAS D  G   +N F+ NT+   E GVKI++A+  + T
Sbjct:  713 HDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIVFT 792          
BLAST of mRNA_A-nodosum_M_contig930.14.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 6.740e-18
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 HDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSD--GRPGENNFYDNTISNTETGVKIKEAD 228
            +DNTFTNVKYGIR+S+G   N V +N F EC QYG+YTYQG+D PEAS D  G   +N F+ NT+   E GVKI++A+
Sbjct:  774 YDNTFTNVKYGIRLSVGASRNVVENNKFSECDQYGIYTYQGNDEPEASKDWDGLLVDNTFHANTV---EGGVKIQKAE 848          
BLAST of mRNA_A-nodosum_M_contig930.14.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 3.710e-17
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 HDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENNFYDNTISNTETGVKIKEADNTIIT 243
            HDN     ++GIR+ LG  NN V+DNVF      G++TY GSD P     GRP +N FY+NTI  TETGVKIKE+DN  IT
Sbjct:  318 HDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGG-GRPCDNEFYNNTIQATETGVKIKESDNISIT 397          
BLAST of mRNA_A-nodosum_M_contig930.14.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.870e-16
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 HDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENNFYDNTISNTETGVKIKEAD 228
            + N     KYGIR+SLG GNN VY N F + SQYGLYTY+GSD P+ S DGRP  N    N + +   GVKIKE D
Sbjct:  758 YGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKIKEGD 832          
BLAST of mRNA_A-nodosum_M_contig930.14.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.330e-15
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 HDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEA-SSDGRPGENNFYDNTISNT--ETGVKIKEADNTI 237
            +DN+FTN +YGIR+SLG G N + +N+F   +QYGLYTY GSD P+  +S+GRP +N F  NTI       GV IKE D+ +
Sbjct:  506 YDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNV 587          
BLAST of mRNA_A-nodosum_M_contig930.14.1 vs. uniprot
Match: A0A6H5JBI1_9PHAE (MEP14 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.460e-14
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    1 HDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSD--GRPGENNFYDNTISNT--ETGVKIKEADNTII 240
            +DN     KYGIR+SLG     VYDNV  + ++YG++ Y+GSD  EAS+D  GRP  N   DNTIS+   E GV +KE+DNT+I
Sbjct:  360 YDNVMEGGKYGIRLSLGAQECEVYDNVISDSTRYGVFFYRGSDEAEASADWDGRPRLNVIRDNTISDPVEEKGVAVKESDNTMI 443          
BLAST of mRNA_A-nodosum_M_contig930.14.1 vs. uniprot
Match: D7FSX3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX3_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.300e-12
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    1 HDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSD--GRPGENNFYDNTISNT--ETGVKIKEADNTII 240
            + N     KYGIR+SLG    +VYDNV  + ++YG++ Y+GSD  EAS+D  GRP  N   +NTIS+   E G+ +KE+DNT+I
Sbjct:  334 YGNVMEGGKYGIRLSLGAEECDVYDNVMSDSTRYGVFFYRGSDEAEASADWDGRPRLNVIRNNTISDPGEEKGIAVKESDNTMI 417          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig930.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JGU8_9PHAE2.620e-2053.09MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LRM4_ECTSI2.020e-1954.88Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D8LRN0_ECTSI7.540e-1955.70Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JNF5_9PHAE1.040e-1856.63MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LDB5_ECTSI6.740e-1857.69Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI3.710e-1754.32Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LC73_ECTSI3.870e-1655.26Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D7G8D9_ECTSI1.330e-1551.22Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JBI1_9PHAE5.460e-1451.19MEP14 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FSX3_ECTSI2.300e-1247.62Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig930contigA-nodosum_M_contig930:272763..273085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LC73
PFAMsWSC
Model size245
Max annot lvl2759|Eukaryota
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.34e-17
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
Cds size243
COG categoryU
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870411.8493662-CDS-A-nodosum_M_contig930:272764..2729071680870411.8493662-CDS-A-nodosum_M_contig930:272764..272907Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 272765..272907 -
1680870411.8616679-CDS-A-nodosum_M_contig930:272985..2730851680870411.8616679-CDS-A-nodosum_M_contig930:272985..273085Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 272986..273085 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig930.14.1prot_A-nodosum_M_contig930.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig930 272765..273085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig930.14.1

>prot_A-nodosum_M_contig930.14.1 ID=prot_A-nodosum_M_contig930.14.1|Name=mRNA_A-nodosum_M_contig930.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=81bp
HDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSD
GRPGENNFYDNTISNTETGVKIKEADNTIIT
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mRNA from alignment at A-nodosum_M_contig930:272763..273085-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig930.14.1 ID=mRNA_A-nodosum_M_contig930.14.1|Name=mRNA_A-nodosum_M_contig930.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=323bp|location=Sequence derived from alignment at A-nodosum_M_contig930:272763..273085- (Ascophyllum nodosum dioecious)
CACGACAACACCTTTACAAACGTCAAGTACGGCATCCGTATCAGCCTGGG CGGAGGCAACAATAACGTGTACGACAATGTGTTTGACGAATGCTCCCAAT GTGAGTCCCCGCCCTCCGTCTGCCCATCTCCGCATTTCTACTCTATTTGC ATTTCTCGACGCACGGCGCGTTTTGCAGATGGTCTGTACACCTACCAGGG TTCTGATGCTCCCGAGGCTTCTTCCGACGGCCGGCCTGGCGAGAACAACT TCTACGACAACACAATCTCCAACACCGAGACGGGTGTCAAGATCAAAGAA GCGGACAACACCATTATCACTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig930:272763..273085-

>mRNA_A-nodosum_M_contig930.14.1 ID=mRNA_A-nodosum_M_contig930.14.1|Name=mRNA_A-nodosum_M_contig930.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=243bp|location=Sequence derived from alignment at A-nodosum_M_contig930:272763..273085- (Ascophyllum nodosum dioecious)
CACGACAACACCTTTACAAACGTCAAGTACGGCATCCGTATCAGCCTGGG
CGGAGGCAACAATAACGTGTACGACAATGTGTTTGACGAATGCTCCCAAT
ATGGTCTGTACACCTACCAGGGTTCTGATGCTCCCGAGGCTTCTTCCGAC
GGCCGGCCTGGCGAGAACAACTTCTACGACAACACAATCTCCAACACCGA
GACGGGTGTCAAGATCAAAGAAGCGGACAACACCATTATCACT
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