mRNA_A-nodosum_M_contig928.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig928.6.1
Unique NamemRNA_A-nodosum_M_contig928.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig928.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig928contigA-nodosum_M_contig928:5366..6487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size209
Hectar predicted targeting categoryother localisation
Exons3
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870400.6728492-CDS-A-nodosum_M_contig928:5366..54151680870400.6728492-CDS-A-nodosum_M_contig928:5366..5415Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig928 5367..5415 -
1680870400.6877291-CDS-A-nodosum_M_contig928:5429..55011680870400.6877291-CDS-A-nodosum_M_contig928:5429..5501Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig928 5430..5501 -
1680870400.7110562-CDS-A-nodosum_M_contig928:6401..64871680870400.7110562-CDS-A-nodosum_M_contig928:6401..6487Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig928 6402..6487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig928.6.1prot_A-nodosum_M_contig928.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig928 5367..6487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig928.6.1

>prot_A-nodosum_M_contig928.6.1 ID=prot_A-nodosum_M_contig928.6.1|Name=mRNA_A-nodosum_M_contig928.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=69bp
RPRPNRQRRDKSLRTGRNARPRTAHRRGQRYLLSWIALLILNKYSQHPPS
SVVVWINDFIVFIVVVGVI
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mRNA from alignment at A-nodosum_M_contig928:5366..6487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig928.6.1 ID=mRNA_A-nodosum_M_contig928.6.1|Name=mRNA_A-nodosum_M_contig928.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1122bp|location=Sequence derived from alignment at A-nodosum_M_contig928:5366..6487- (Ascophyllum nodosum dioecious)
CGCCCAAGACCAAACCGGCAGCGACGGGACAAATCCCTGCGAACGGGACG
AAACGCGAGGCCTCGAACCGCTCATCGTCGAGGACAGCGGCGGAGAGAAA
TGAAATTGAAAACAAGGCGTAAACGGAGTCCATGATCAAGCTGGCGGTGG
GGACCGGCTTGTGTCGCTGAGAGGGGCGGAAAAGGGAAAGAGCAAGAATG
GCAAGCAAGAGTAAGGGTAAGGTAAGGGTAAGGTAAGATCTCCATTAGTT
GGGGAGGTGCAGCTTAGACGGCTGTATCGTTTTTGCGTTTCCGGAAATTC
AGACACTCCGTTATTTTCCCGATTACTTGTTCATTTTGTTTGGGGGTAGG
TTCGTGAAATTTTGGTGTCATATAATAGTTGATGTTTGTATTTGGGCCGT
CTTTATTTTCTACTCCGAGTATTTTTTTTCGGGGGTGGGTGGATGGACCC
CAGTCGTGTATCTTTTCTTCTTTTACTTGTGTTATTATGGTCATCACAAA
TAGCAGAGTATGGATCAACCGGATAAGGTTGCCAATCCTGCTCGTGGTCA
GCTGAACAGGGAAAATGAATATTACCCTCTCCCCGTACTTGTACGCGCCT
GAGAATTTGGTCTCGCGAGACAAGTTCAGCCGCCCCGTCCCGCGTCAGCC
TGATCATTCTATATACTCAGGCTGAATCTGGTGCTTACTCACGGGATGCC
TCCCGATTTCCGCGGCGGCGTCCATCTATTCCTTTATAACCGCCATACCC
CATCGGGTCAGTCCCGAGTTCATCGGGTCACGCAATTGCGTACCGATGGC
GTTCACTGCCGAGAATCCGCCGGCACAGGGCCAGTAGTCCTCAAGGTAGT
TCCAGTTATGTATGTACGTACGGTTGGGTTATTCTGTGCCTTTACCCCAC
CCCGTTTTACTTAGAAATAGCGCCTATAGCACTATTAGTACTAGTAATAC
TATCATAGTAATACTATATAGTAATAATAGAGCTAGGCGGTACCTGCTGT
CATGGATCGCCCTATTAATACTTAATAAATACTCGCAGCATCCCCCCAGT
AGTGTAGTGTAGTGTAGTGTAGTGTATGGATCAATGATTTCATTGTTTTC
ATTGTTGTCGTTGGTGTCATTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig928:5366..6487-

>mRNA_A-nodosum_M_contig928.6.1 ID=mRNA_A-nodosum_M_contig928.6.1|Name=mRNA_A-nodosum_M_contig928.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=207bp|location=Sequence derived from alignment at A-nodosum_M_contig928:5366..6487- (Ascophyllum nodosum dioecious)
CGCCCAAGACCAAACCGGCAGCGACGGGACAAATCCCTGCGAACGGGACG
AAACGCGAGGCCTCGAACCGCTCATCGTCGAGGACAGCGGTACCTGCTGT
CATGGATCGCCCTATTAATACTTAATAAATACTCGCAGCATCCCCCCAGT
AGTGTAGTTGTATGGATCAATGATTTCATTGTTTTCATTGTTGTCGTTGG
TGTCATT
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