mRNA_A-nodosum_M_contig9275.2.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: D8LQZ5_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ5_ECTSI) HSP 1 Score: 444 bits (1143), Expect = 4.480e-150 Identity = 260/399 (65.16%), Postives = 286/399 (71.68%), Query Frame = 3
Query: 60 PVPITLV-SLLSRDADQLALDCGVNVRKINELRYLVALRCQAQPPVLDRRFLSQGARADEEVTVRGHDTEGKGDAATTSAWRTGGGAGGSTGTGNLA-----------------------------------LSFESADTLYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLTAAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVA----SNEEGPRAALGATWEVVPSIRLVLSDASEEE--ASXXXXXXXXXXXXXGAVTARTATVLKHPAQA 1130
PVPI L SLLSRD +QLAL+CGV+++ +++LRYLVALRCQ QPPV DRR T +GH EGK GAG ST LSFESAD LYRQAR+VGGFVTTGSDSLD LLCKGLMLHHV+EVVGRSSSGKTQLCLTAAVAAASHGIGVLY+DTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRV+RAFDI+ VMSAL +Y+DGV EGG +GVYSDCRLVILDSVTAV+SPLLGG KNP GHGLMA+LGHLLNRAASQCSACVLVAN+TVA S EEGPRAALG TWE VPSIR++L++AS AS G + RTAT+LKHPAQA
Sbjct: 21 PVPIVLAESLLSRDPEQLALECGVSMKAVSKLRYLVALRCQPQPPVPDRRAPEDNGDGATPNT-QGHGGEGKR------------GAGSSTXXXXXXXXXXXXXXXXXXSPRRIGXXXXXXXXXXXXXXPPLLSFESADALYRQARDVGGFVTTGSDSLDNLLCKGLMLHHVVEVVGRSSSGKTQLCLTAAVAAASHGIGVLYIDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVVRAFDISRVMSALVAYIDGVMEGGRNGVYSDCRLVILDSVTAVISPLLGGFKNPAGHGLMASLGHLLNRAASQCSACVLVANSTVAPRGISEEEGPRAALGLTWEGVPSIRVLLAEASAAAGGASGSGDAGGADHGTVGEASPRTATLLKHPAQA 406
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: A0A6H5L2A5_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A5_9PHAE) HSP 1 Score: 243 bits (620), Expect = 4.830e-75 Identity = 124/149 (83.22%), Postives = 137/149 (91.95%), Query Frame = 3
Query: 504 QLCLTAAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNE 950
QLCLTAAVAAASHGIGVLY+DTANGCSVRRMQQIARSRYADANGEM ARQ+DALLDRLRV+RAFD++ VMSAL +Y+DGV EGG +GVYSDCRL+ILDSVTAV+SPLLGG KNP GHGLMA+LGHLLNRAASQCSACVLV + S+E
Sbjct: 13 QLCLTAAVAAASHGIGVLYIDTANGCSVRRMQQIARSRYADANGEMAARQVDALLDRLRVVRAFDVSRVMSALVAYIDGVMEGGRNGVYSDCRLIILDSVTAVISPLLGGFKNPAGHGLMASLGHLLNRAASQCSACVLVGCFFLCSSE 161
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: A0A835YM23_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM23_9STRA) HSP 1 Score: 162 bits (410), Expect = 2.100e-41 Identity = 119/318 (37.42%), Postives = 150/318 (47.17%), Query Frame = 3
Query: 333 TGNLALSFESADTLYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLTAAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSAL---------TSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGP--------------------------RAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACG-KTAKFAIGDGGVVD 1178
+G LA+ FESA YR A GG + G S+D LL GL L V EVVG++ +GKTQLC++AA AAS GIGVLY+DT NGCS RR+Q+IA +R A A L + + R + + V++AL T RLVILDS AV++PLLGG N G +ATL L+ A S VLV N VA RAALGA W P++RL+L GA + R A + KHP +ACG A+FA+G GVVD
Sbjct: 76 SGPLAI-FESAAARYRYAMRQGGLLQMGCSSIDGLLGGGLALQQVTEVVGQTGAGKTQLCMSAAAVAASSGIGVLYIDTTNGCSPRRLQEIAAARGGSAAAP-------AALSHITIERCYSLANVLAALDGLATRLVRTPIATAAXXXXXXXXAHAIRLVILDSAAAVLAPLLGGEGNAPGAAALATLAAALSHTALSLSVAVLVTNGAVADRAPXXXXXXXXXGSRGFGXXXXXXXXXXXXKRAALGARWAAAPAVRLLLDG--------------------GAQSGRVAVLDKHPLRACGGAAARFAVGGAGVVD 365
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: A0A1Y1HKY4_KLENI (DNA repair protein RAD51 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HKY4_KLENI) HSP 1 Score: 133 bits (334), Expect = 4.430e-31 Identity = 96/277 (34.66%), Postives = 143/277 (51.62%), Query Frame = 3
Query: 369 TLYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLTAAVAAASH-GIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTS---YMDGV-TEGGLDGVYSD----CRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGDGGV 1172
TL+ + V+TG S+D ++ GL + E+VG S+SGKTQLCL AA AAA V ++DT+N S R+ QI + +++ + R+ +AFDI T + L +MDG ++ G DG D +L+ILDS +A++SP+LGGA + GH LM +L LL + A + + VLV N TV+ P+ ALG +W+ VPS+RL L+ E + TATV KH ACG++ + + G+
Sbjct: 69 TLFERLTTSTTLVSTGCPSIDDVIGGGLRPGTITELVGTSASGKTQLCLQAAAAAALELRASVAFIDTSNSFSAHRLAQIVTGLHGKDKFVEHKQELRNVARRVLCFKAFDIYTALRLLDDLLVHMDGAESKRGGDGNQGDFFQKLQLLILDSASAIISPVLGGA-HTQGHALMVSLSGLLRQIALKHNIAVLVTNHTVSGEGGRPKPALGESWKSVPSVRLALAREDESDCC-------------------TATVTKHTIGACGESVPYVLSRDGL 325
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: UPI001BB27994 (DNA repair protein RAD51 homolog 4-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB27994) HSP 1 Score: 129 bits (323), Expect = 9.060e-30 Identity = 91/268 (33.96%), Postives = 136/268 (50.75%), Query Frame = 3
Query: 372 LYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLT-AAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGDGGV 1172
LY + +++TG DS+D+LL G+ V EVVG+++ GKTQ CLT A+ A S VLY+DT G R+ +I + + ++TA A L ++ + FD+ ++ L S + + G D YS +LV+LDSVTAV++PLLGG K+ +G G+M L L A+ S V+V N V P+ +LG TW VP R+ L + + RTA+++K QA + AIG+ GV
Sbjct: 71 LYDEVLSTVAYLSTGCDSIDKLLDSGVYTSEVTEVVGQAAIGKTQFCLTLASCVAVSSEQNVLYVDTNGGFDAGRLHEIIA--HKSTSEKITA----AALQKVHCAKTFDLYDLLDLLESIKASI-DSGTDVFYSSLKLVVLDSVTAVLAPLLGG-KHSEGQGMMVHLARSLKSLAADYSIAVVVCNNMVRGERGEPKPSLGRTWLSVPHTRIQLRADGRDGITSRDDLR------------RTASLVKSQRQAINTSCNIAIGNQGV 318
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: UPI0018D9AD9F (DNA repair protein RAD51 homolog 4-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D9AD9F) HSP 1 Score: 127 bits (320), Expect = 2.510e-29 Identity = 90/257 (35.02%), Postives = 130/257 (50.58%), Query Frame = 3
Query: 405 VTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLTAAVAAASHGI-GVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGDGGV 1172
++TG SLD LL GL + E+ G ++GKTQLC+T A + A+ VLY+DT G S +R+Q I +R T + M A RLR R FD+ ++S L + + G D Y+ +LV++DSVTAVV+P+LGG + +GHG+M L L A + S VL+ N V + + ALG TW VP RL+L+ ++AS R A ++K Q + F I D G+
Sbjct: 82 LSTGCSSLDELLDGGLYTSELTEITGGPATGKTQLCMTTAASVATTAQQNVLYIDTNGGFSSQRLQDIMAAR------GNTDKIMAAAFQRLRCARTFDLFELLSLLEMTKSSM-DSGSDAFYASLKLVVVDSVTAVVAPVLGGQQT-EGHGMMIHLARSLKALAVEYSVAVLLTNNQVRGDGTQRKPALGRTWSHVPHCRLLLTHDRSDDASLCTVNRPIN---------REARIIKSGRQPINVSCTFKIDDSGI 321
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: UPI0018F4FA24 (DNA repair protein RAD51 homolog 4 n=1 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F4FA24) HSP 1 Score: 124 bits (312), Expect = 3.010e-28 Identity = 85/229 (37.12%), Postives = 124/229 (54.15%), Query Frame = 3
Query: 345 ALSFESADTLYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLTAAVAAASHGIG--VLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEG-PRAALGATWEVVPSIRLVLSDA 1022
AL AD +Y + E + TG LD++L GL V E+ G SGKTQ+CL AA A+ +HG+G VL++D+ G + R+ Q+ R+R D + A L R+RV+R+FD V+ AL ++ G+D ++V++DSV+AV+SPLLGG ++ +G +M L L A + V+V N E G PR LG +W VPS R+VL A
Sbjct: 63 ALPLSGAD-VYEELAETTAILPTGLPGLDQILDSGLYTGEVAELTGAPGSGKTQVCLCAA-ASVAHGLGRDVLFVDSTGGFTATRLLQLLRARTRDEEEQAGA------LRRIRVVRSFDAFGVLDALQDLRGSFSQQGMDAA-GPVKMVVVDSVSAVISPLLGGRQS-EGLAVMMQLARELKTLAREFGVAVMVTNHVTRDRETGRPRPGLGRSWSFVPSTRVVLEGA 281
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: W1PFT7_AMBTC (RECA_2 domain-containing protein n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1PFT7_AMBTC) HSP 1 Score: 123 bits (309), Expect = 8.440e-28 Identity = 86/257 (33.46%), Postives = 130/257 (50.58%), Query Frame = 3
Query: 402 FVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLTAAVAAA-SHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSAL----TSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAI 1157
F+ TG D +D LLC GL ++ E+ G SSSGKTQ CL AA A ++ VLYLDT+N S +R+ A N R ++ ++ + FDI ++ L S + + + S RL+I+DS++++++P+LGG K P GH LM +G +L + A + VLV N TV + ALG +W+ VP RL+LS ++ S ++LKH + ACG+TA F +
Sbjct: 88 FLLTGFDGIDTLLCGGLCEGNLTELAGPSSSGKTQFCLHAAAHVAYTYMCSVLYLDTSNSFSSKRISYRVNRLLASPNKGEKGRSLEGIMSSILSHSVFDIFSMFETLHQLELSLSSQLFQAEIQN--SKLRLLIVDSISSLITPILGG-KGPQGHSLMLNVGFILKKLAIDYNLAVLVTNHTVVGEGGNSKPALGESWKSVPHTRLLLS---RDQMSNIC----------------NMSILKHTSMACGQTASFRL 322
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: A0A7L3N2D3_9AVES (RA51D protein (Fragment) n=4 Tax=Trochilidae TaxID=9242 RepID=A0A7L3N2D3_9AVES) HSP 1 Score: 123 bits (308), Expect = 9.080e-28 Identity = 93/267 (34.83%), Postives = 137/267 (51.31%), Query Frame = 3
Query: 372 LYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCL-TAAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGP-RAALGATWEVVPSIRLVLS--DASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIG 1160
LY + + + TG SLD+LL GL V E++G SGKTQ+CL AA + S VL+LD+ G S R+ Q+ ++R D + T L R++V+R FDI ++SAL D +++ L V ++VI+DSV+AV+ PLLGG K +G +M L L A + S V+V N + GP + ALG +W VPS R++L +A+ E+A+ T R A++ K P Q G + IG
Sbjct: 71 LYEELKSTTAILPTGIPSLDQLLDSGLYTGEVTELMGAPGSGKTQVCLGIAATVSLSLKHRVLFLDSTGGLSASRLYQMLQARVEDEEEQAT-------LQRIQVVRVFDIYEMLSALQELRDCLSQQVLSSV-GPLKIVIIDSVSAVIYPLLGG-KQSEGLAIMMQLARELKSLAREFSLTVVVTNQVTRDSSTGPLKPALGRSWSFVPSTRVLLESKEATWEKAT----------------TQRVASLTKSPRQPTGIQVELDIG 312
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: A0A7M7LLB9_STRPU (RECA_2 domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7LLB9_STRPU) HSP 1 Score: 123 bits (308), Expect = 1.140e-27 Identity = 88/269 (32.71%), Postives = 132/269 (49.07%), Query Frame = 3
Query: 372 LYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLT-AAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVL-SDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGDGGV 1172
LY + +++TG DS+D+LL G+ + E+VG+++ GKTQ CLT A+ A S VL++DT G R+ I A+ + + A L ++ FD+ ++ L S + + + YS +LV+LDSVTAV++PLLGG K+ +G G+M L L A+ S V++ N V P+ ALG TW VP R+ L +D + S RTA ++K QA + AIGD GV
Sbjct: 71 LYDEVISTVAYLSTGCDSIDKLLDGGVYTSELTEIVGQAAVGKTQFCLTLASCVAVSSEQNVLFIDTNGGFHASRLHDII------AHKSTSEKITSAALQKVHCATTFDLYGLLDLLESIKASI-DSASEAFYSSLKLVVLDSVTAVLAPLLGG-KHSEGQGMMVHLARSLKSLAADYSIAVVICNNMVRGERGEPKPALGRTWLTVPHTRIQLRADGKDGNTSRNTETSIN----------RTACLVKSQRQAVNSSCCIAIGDQGV 321 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9275.2.1 >prot_A-nodosum_M_contig9275.2.1 ID=prot_A-nodosum_M_contig9275.2.1|Name=mRNA_A-nodosum_M_contig9275.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=246bp MLHHVIEVVGRSSSGKTQLCLTAAVAAASHGIGVLYLDTANGCSVRRMQQback to top mRNA from alignment at A-nodosum_M_contig9275:11498..17083+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9275.2.1 ID=mRNA_A-nodosum_M_contig9275.2.1|Name=mRNA_A-nodosum_M_contig9275.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5586bp|location=Sequence derived from alignment at A-nodosum_M_contig9275:11498..17083+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9275:11498..17083+ >mRNA_A-nodosum_M_contig9275.2.1 ID=mRNA_A-nodosum_M_contig9275.2.1|Name=mRNA_A-nodosum_M_contig9275.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at A-nodosum_M_contig9275:11498..17083+ (Ascophyllum nodosum dioecious)back to top |