prot_A-nodosum_M_contig9144.4.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9144.4.1
Unique Nameprot_A-nodosum_M_contig9144.4.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length129
Homology
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BLAST of mRNA_A-nodosum_M_contig9144.4.1 vs. uniprot
Match: D7FHM1_ECTSI (TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM1_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.420e-44
Identity = 76/126 (60.32%), Postives = 101/126 (80.16%), Query Frame = 0 
Query:    4 TDKRRLEMSRKLKEELCYVPLDFNVEAEEHGSFRQKVMRICKGARLSPKLSQYESCETDKFLEETDEDAGVKRTKTFQLKSGDELLVTLGRERFHAPEILFTPRMWNNSGASKGLPEVVVDALSSM 129
            TD+RRLE +R++KEE CYVPLDF +E EE+G+F++K MR+CKGA+ SP LS YE+C++  F++ETD+D  V +TKTF LKSG EL V +GRERFHAPEILFTP +WN  G S+ L + V+DAL+ +
Sbjct: 1485 TDRRRLEYTREMKEEQCYVPLDFALEVEEYGAFKRKAMRVCKGAQASPMLSGYEACDSRDFIDETDKDEEVTKTKTFTLKSGSELDVKIGRERFHAPEILFTPGLWNEGGVSRSLSQAVLDALAEL 1610
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BLAST of mRNA_A-nodosum_M_contig9144.4.1 vs. uniprot
Match: A0A6H5JDL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL2_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.710e-42
Identity = 76/130 (58.46%), Postives = 101/130 (77.69%), Query Frame = 0 
Query:    4 TDKRRLEMSRKLKEELCYVPLDFNVEAEEHGSFRQKVMRICKGARLSPKLSQYESCETDKFLEETDEDAGVKRTKTFQLKSGDELLVTLGRERFHAPEILFT----PRMWNNSGASKGLPEVVVDALSSM 129
            TD+RRLE +R++KEE CYVPLDF +E EE+G+F++K MR+CKGA+ SP LS YE+C++  F+++TD D  V +TKTF LKSG EL V +GRERFHAPEILFT    P +WN  G S+ L +VV+DAL+ +
Sbjct:  860 TDRRRLEYTREMKEEHCYVPLDFALEVEEYGAFKRKAMRVCKGAQASPMLSGYEACDSRDFIDDTDTDEEVTKTKTFTLKSGSELDVKIGRERFHAPEILFTASHHPGLWNEGGVSRSLSQVVLDALAEL 989
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BLAST of mRNA_A-nodosum_M_contig9144.4.1 vs. uniprot
Match: W7TNT9_9STRA (Actin-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNT9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.010e-6
Identity = 38/136 (27.94%), Postives = 74/136 (54.41%), Query Frame = 0 
Query:    5 DKRRLEMSRKLKEELCYVPLDFNVEAEEHGSFRQKVMRICKGARLSPKLSQYESCETDKFLE-----ETDEDAGVKRTKTFQ------LKSGDELLVTLGRERFHAPEILFTPRMWNNSGASKGLPEVVVDALSSM 129
            +++ LE++R +KE   YV  DFN E   +G+F ++ + + K  R    ++  ES    + L+     E D  +   R           LK+G+EL++++G ERFH  E+ F P+++ + G +  + ++V+ +L+S+
Sbjct: 1117 ERKMLEVARLIKESHAYVAADFNCERGRYGTFEREKIDVMKFHRAQ--IATEESVVPGRRLDMASVREPDGKSNTSRDGRGSVEVRQPLKNGEELVLSVGCERFHCGELFFRPKLFPDIGQTTSVIDLVMKSLASV 1250
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9144.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHM1_ECTSI1.420e-4460.32TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus sil... [more]
A0A6H5JDL2_9PHAE2.710e-4258.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TNT9_9STRA1.010e-627.94Actin-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004000Actin familyPFAMPF00022Actincoord: 9..127
e-value: 3.3E-7
score: 29.3
NoneNo IPR availableGENE3D3.90.640.10Actin; Chain A, domain 4coord: 2..112
e-value: 8.8E-13
score: 50.0
IPR043129ATPase, nucleotide binding domainSUPERFAMILY53067Actin-like ATPase domaincoord: 9..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9144contigA-nodosum_M_contig9144:6690..7440 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9144.4.1mRNA_A-nodosum_M_contig9144.4.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9144 6690..7440 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9144.4.1 ID=prot_A-nodosum_M_contig9144.4.1|Name=mRNA_A-nodosum_M_contig9144.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=129bp
MIKTDKRRLEMSRKLKEELCYVPLDFNVEAEEHGSFRQKVMRICKGARLS
PKLSQYESCETDKFLEETDEDAGVKRTKTFQLKSGDELLVTLGRERFHAP
EILFTPRMWNNSGASKGLPEVVVDALSSM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004000Actin
IPR043129ATPase_NBD