prot_A-nodosum_M_contig910.16.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig910.16.1
Unique Name	prot_A-nodosum_M_contig910.16.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	618

Homology

[Close]

BLAST of mRNA_A-nodosum_M_contig910.16.1 vs. uniprot
Match: D8LPP9_ECTSI (CCCH-type Zn finger-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPP9_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 1.450e-63
Identity = 218/631 (34.55%), Postives = 279/631 (44.22%), Query Frame = 0

Query:   33 PTPQTGHNAPASP--GDCLYFLGGTCTKGDSCPFRHNHAAKANGIVXXXXXXXXXXXXXXXXXXXPV-----GAGRGHGRSGPGNRFIAGRGMGGRSFGGGRGNSRAPTEAVDRSKQTCVFFAQGICTKGDACQFSHATLQENGAGQAMN------RAIGSGNEPQRTGSAEEHILVMPGSRNGDVP------------EQIKVGGADGIGTAFFGSAVRGTEERPPVVRLGGASTSMHIGTALGSDPFSAAPPVMIGGDGKTYVVGPDGLVPLDAVMRTMAATGKDTQSTPSTAPRNPATVEPQQRSTIHVRNERSRVAVTPQSSLQALDKDKDPQKSGIITLPGGGFVTRKRAAEMQLLGEGRGGKDLRCIRQRDAREQVNQHDRLRAEGKAAPQASGRPSIMDRLGPAKQQSVTSVTSTSWERVVGPKMIRPEVPAQSSRKREEPRQLSAPVDRPRDGPQVNRPSPLSRSQALGTSRSTRRLDDGSGQGTPAGTVVTTRPTVQHKPASSLDFKISTLDEIKTRKAKAKVKAEEARTEATATARKIQSGDDQTIAVGLGSSQGAEVSVVASPASVGKEDVSDTAP------------AIP---------VPSDVLKLEQDDMIEFRQWL 617
            P+P  G  A A+P  GDC YFL GTCTKG++C FRH+ AA+A+GIV                   PV     G GRG GR G G    AGRG      GG R       E VDRSKQTCVFF QG CTKGDAC FSHA   E G  QA        RA      PQ   + +     +P +RN  VP            E+ K  G  G  +A    +  G EE          S S  +G A G     A P + +   GK YV                                               RN ++R   +          D+  +  GII LP GG VTRKRAAE+QL  + RG  + R +RQRD REQ    +R    G       GR  I+DRLGP  Q S T+ T T W  +V P  IR E P   +RKREEPR    PV+RP  G Q +  S L RS+ + ++  TRR   G G G  + + +     V  + +S+LDFKI TLDEIK+RKAKA+V A            ++ +  DQ  +   G     E  + A+PA+    + + T+P            ++P         V SD  +L+ +DM EF +WL
Sbjct:   56 PSPNPGKIAAAAPAAGDCYYFLQGTCTKGNNCLFRHSEAARASGIVCRFWQNGFCKDDVNCPFLHPVRGQGMGGGRG-GRFGGGXXMAAGRGGXXXXRGGPRLQG---WETVDRSKQTCVFFVQGKCTKGDACPFSHAIPSEGGVSQAAEANHLPQRAAVPEGRPQPP-AMDSSPAPVPAARNDSVPQTKTSASEASRGEETKANGIPGQSSASVRVSGAGREEA--------RSFSRRVG-AFGDGASKADPALAVASAGKAYVT---------------------------------------------ARNGQARATSS---------SDQRQEAPGIIVLPDGGLVTRKRAAELQLRKDERGDAEARNVRQRDGREQGRAQERRPTSGSRGVLPVGRVPILDRLGPVTQASDTAPT-TEW--IVAPARIRREAPTLQARKREEPRPHVTPVERP--GLQPSSSSSLPRSRVMASALPTRRTGGGRGAGGDSTSAIARPAVVAQRKSSALDFKIPTLDEIKSRKAKAEVAAP-----------RVTTKRDQAFSASNG-----EKPMSATPAAPDAVEEAPTSPNSVVSTTVGVQPSLPLXXXXXXXTVQSDPPQLDAEDMDEFSEWL 597

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig910.16.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig910.16.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LPP9_ECTSI	1.450e-63	34.55	CCCH-type Zn finger-containing protein n=2 Tax=Ect...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 527..547
None	No IPR available	PFAM	PF18345	zf_CCCH_4	coord: 144..162 e-value: 3.5E-7 score: 30.0
None	No IPR available	GENE3D	4.10.1000.10		coord: 129..192 e-value: 1.7E-5 score: 26.7 coord: 36..101 e-value: 5.6E-12 score: 47.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 445..461
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 473..509
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 382..509
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 290..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 417..432
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 382..399
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 5..40
None	No IPR available	PANTHER	PTHR15725:SF14	ZINC FINGER CCCH-TYPE-CONTAINING 11A	coord: 47..166
None	No IPR available	PANTHER	PTHR15725	ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING	coord: 47..166
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 139..164 e-value: 4.1E-5 score: 33.0 coord: 44..68 e-value: 7.9E-4 score: 28.7 coord: 72..97 e-value: 0.0018 score: 27.6
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 71..98 score: 12.182922
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 138..165 score: 14.210967
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 42..69 score: 12.783824
IPR041686	Zinc-finger CCCH domain	PFAM	PF15663	zf-CCCH_3	coord: 46..95 e-value: 1.7E-12 score: 47.4
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 73..96
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 48..67
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 138..163

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig910	contig	A-nodosum_M_contig910:119340..127769 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig910.16.1	mRNA_A-nodosum_M_contig910.16.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig910 119176..128685 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig910.16.1 ID=prot_A-nodosum_M_contig910.16.1|Name=mRNA_A-nodosum_M_contig910.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=618bp
MFGTGAGFGGGHGDSGTSDTPQRLVHPTSGPLPTPQTGHNAPASPGDCLY
FLGGTCTKGDSCPFRHNHAAKANGIVCRFWQNGFCKDAANCSFQHPVGAG
RGHGRSGPGNRFIAGRGMGGRSFGGGRGNSRAPTEAVDRSKQTCVFFAQG
ICTKGDACQFSHATLQENGAGQAMNRAIGSGNEPQRTGSAEEHILVMPGS
RNGDVPEQIKVGGADGIGTAFFGSAVRGTEERPPVVRLGGASTSMHIGTA
LGSDPFSAAPPVMIGGDGKTYVVGPDGLVPLDAVMRTMAATGKDTQSTPS
TAPRNPATVEPQQRSTIHVRNERSRVAVTPQSSLQALDKDKDPQKSGIIT
LPGGGFVTRKRAAEMQLLGEGRGGKDLRCIRQRDAREQVNQHDRLRAEGK
AAPQASGRPSIMDRLGPAKQQSVTSVTSTSWERVVGPKMIRPEVPAQSSR
KREEPRQLSAPVDRPRDGPQVNRPSPLSRSQALGTSRSTRRLDDGSGQGT
PAGTVVTTRPTVQHKPASSLDFKISTLDEIKTRKAKAKVKAEEARTEATA
TARKIQSGDDQTIAVGLGSSQGAEVSVVASPASVGKEDVSDTAPAIPVPS
DVLKLEQDDMIEFRQWL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH
IPR041686	Znf-CCCH_3
IPR036855	Znf_CCCH_sf