mRNA_A-nodosum_M_contig91.30.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig91.30.1
Unique NamemRNA_A-nodosum_M_contig91.30.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig91.30.1 vs. uniprot
Match: D8LCF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCF0_ECTSI)

HSP 1 Score: 415 bits (1066), Expect = 2.580e-145
Identity = 215/247 (87.04%), Postives = 232/247 (93.93%), Query Frame = 1 
Query:    1 MTAKTKGETKPIIPESVLKKRRTKEAIAAKQAAKRDTDAKDAEAKKEEIFKRAERYVKEYRDQENDAIRFRREAKADGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALVKRML 741
            M A    E+KPIIPESVLKKRRTKEAIAAKQAAK++ D K A AKK EIF+RAERYVKEYR QEND+IRFRREAKA GNI+VPAE+ VV+V+RIRGIIGVSPKVRKILQLLRLRQINN+VFVKLNAAT+KMLRLVEPY+AYGYPNLKTVRELIYKRGFGKV+KQRIPISDNSV+EG+LGK GIICVEDLIHEIYTVGP+FK ANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINAL+KRML
Sbjct:    1 MPAAVSKESKPIIPESVLKKRRTKEAIAAKQAAKQEADQKAAAAKKTEIFERAERYVKEYRAQENDSIRFRREAKAAGNIHVPAEAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGTLGKAGIICVEDLIHEIYTVGPNFKAANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALIKRML 247
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BLAST of mRNA_A-nodosum_M_contig91.30.1 vs. uniprot
Match: A0A836CG85_9STRA (Ribosomal protein L30, ferredoxin-like fold domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG85_9STRA)

HSP 1 Score: 344 bits (882), Expect = 2.030e-117
Identity = 172/237 (72.57%), Postives = 202/237 (85.23%), Query Frame = 1 
Query:   31 PIIPESVLKKRRTKEAIAAKQAAKRDTDAKDAEAKKEEIFKRAERYVKEYRDQENDAIRFRREAKADGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALVKRML 741
            P +PESVLKKRR +E I+A++        KD  AK++E+F RA++Y +EY D +  AI  RR AK +GN YVPAE+K+ +VIRIRGIIGV PKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKT+++L+YKRGFGKV K RIPISDNSV+EG LGK+GI+ V+DLIHEIYTVGPHFKEANNFLWPFKLSNP GGF QKLLHFNEGG+AGQRG +IN +++ M+
Sbjct:    3 PFVPESVLKKRRAQEEISARKVKAASAAKKDRAAKRKELFVRAQKYEQEYNDADKAAIDLRRAAKKEGNFYVPAEAKLAVVIRIRGIIGVGPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTIKQLVYKRGFGKVRKSRIPISDNSVIEGVLGKYGIVGVDDLIHEIYTVGPHFKEANNFLWPFKLSNPTGGFTQKLLHFNEGGEAGQRGEEINKMIRLMV 239
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BLAST of mRNA_A-nodosum_M_contig91.30.1 vs. uniprot
Match: A0A7S3V109_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V109_9STRA)

HSP 1 Score: 330 bits (847), Expect = 4.290e-112
Identity = 167/236 (70.76%), Postives = 201/236 (85.17%), Query Frame = 1 
Query:   34 IIPESVLKKRRTKEAIAAKQAAKRDTDAKDAEAKKEEIFKRAERYVKEYRDQENDAIRFRREAKADGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALVKRML 741
            +IPESVLKKR T   + AK+   +   A + + K+ + FKRAE+YVKEY+  END +R +R AK++GN+YV  ESK+++  RIRGIIG+SPKVRKILQLLRLRQI+NTVF+K N ATI MLRLVEP++AYGYP+LKTVREL+YKRGFGKV+KQRIPI+DNSV+E  LGK  IICVEDLIHEIYTVGP+FK A NFLWPFKLS+PNGGF++KLLHFNEGGDAG RGAKINAL+KRM+
Sbjct:    4 VIPESVLKKRATLAELKAKREEHKAKVAAERKVKRSKAFKRAEQYVKEYKAAENDLVRLKRVAKSEGNLYVEPESKLIVATRIRGIIGISPKVRKILQLLRLRQIHNTVFLKANKATINMLRLVEPFVAYGYPSLKTVRELVYKRGFGKVNKQRIPIADNSVIEEVLGKKDIICVEDLIHEIYTVGPNFKAAANFLWPFKLSSPNGGFKRKLLHFNEGGDAGNRGAKINALIKRMI 239
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BLAST of mRNA_A-nodosum_M_contig91.30.1 vs. uniprot
Match: A0A7S2WW50_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW50_9STRA)

HSP 1 Score: 324 bits (830), Expect = 2.970e-109
Identity = 172/236 (72.88%), Postives = 196/236 (83.05%), Query Frame = 1 
Query:   37 IPESVLKKRRT-KEAIAAKQAAKRDTDAKDAEAKKEEIFKRAERYVKEYRDQENDAIRFRREAKADGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALVKRML 741
            +PESVLKKR T  +  AAK  AK   + K AE  KE++ KRAE YV EY+  ENDAIR RREAK  G+ YVP E K+  V+RIRGIIGVSPKVRKILQLLRLRQI+N VFVKLN+ATIKMLRLVEPYIAYGYPNLK+ REL+ KRGFGKV+KQRI ISDNSV+E  LGK+ IICVEDLIHEIYTVGPHFKEA+NFLWP KLS+P GGF +KL+HFNEGG+AG RG KIN L+K+M+
Sbjct:   22 VPESVLKKRDTANKNAAAKAEAKAAAELKAAE-NKEQMLKRAETYVNEYKQMENDAIRLRREAKVAGSYYVPEEPKLAFVVRIRGIIGVSPKVRKILQLLRLRQIHNGVFVKLNSATIKMLRLVEPYIAYGYPNLKSTRELVLKRGFGKVNKQRIAISDNSVIEQVLGKYDIICVEDLIHEIYTVGPHFKEASNFLWPMKLSSPKGGFSRKLIHFNEGGEAGLRGDKINGLIKQMI 256
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BLAST of mRNA_A-nodosum_M_contig91.30.1 vs. uniprot
Match: A0A7S4E8W3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8W3_9STRA)

HSP 1 Score: 323 bits (828), Expect = 3.220e-109
Identity = 164/237 (69.20%), Postives = 196/237 (82.70%), Query Frame = 1 
Query:   31 PIIPESVLKKRRTKEAIAAKQAAKRDTDAKDAEAKKEEIFKRAERYVKEYRDQENDAIRFRREAKADGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALVKRML 741
            P +PESVLKKRR + AIAA + A         +AKK+ IFKRAE+Y  EY+ QENDAIR RREAK   +IYVP E+K+  VIRIRGIIG+SPKV+KILQLLRLRQ+++ VFVKLN +TIKMLRLVEPYIAYG PNLKTVREL+YKRG+GKV+KQR+PI +N+VVE  LGK+ I+CVED+IHE+YT GPHFKE  NFLWP KLS+P GGF+ KLLH+NEGGDAG RG KI+ LVK+M+
Sbjct:    2 PFVPESVLKKRRAQAAIAADKDAASXXXXXXXKAKKDVIFKRAEKYAAEYKQQENDAIRLRREAKKANSIYVPPEAKLAFVIRIRGIIGMSPKVKKILQLLRLRQLHSGVFVKLNGSTIKMLRLVEPYIAYGTPNLKTVRELVYKRGYGKVNKQRVPIDNNAVVEQVLGKYDIVCVEDVIHELYTTGPHFKEVANFLWPCKLSSPTGGFKMKLLHYNEGGDAGDRGEKIHELVKKMI 238
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BLAST of mRNA_A-nodosum_M_contig91.30.1 vs. uniprot
Match: A0A4D9CRP3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRP3_9STRA)

HSP 1 Score: 319 bits (818), Expect = 1.030e-107
Identity = 161/235 (68.51%), Postives = 195/235 (82.98%), Query Frame = 1 
Query:   37 IPESVLKKRRTKEAIAAKQAAKRDTDAKDAEAKKEEIFKRAERYVKEYRDQENDAIRFRREAKADGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALVKRML 741
            IPES+LKKRRT+EA+ A + A++    K A AK+ E  KRAE+Y+ EY+  END IR RREAKA G  YVPAE+KV  V+RIRGI GVSPKV+KILQLLRLRQI+N VF+KLN +T+ +LR VEPYIAYGYPNLK+VRELIYKRG+ KV+KQR+P++DN++VE  LGK+G+ICVEDLIHEIYTVGPHFK+A NFLWPFKLS+P GG++ K  HF EGGDAG RG KINA +K +L
Sbjct:    3 IPESILKKRRTQEALLATKLAEKAAAKKAARAKRGETVKRAEKYMNEYKKLENDQIRLRREAKASGAFYVPAEAKVAFVMRIRGINGVSPKVKKILQLLRLRQIHNGVFIKLNGSTVNLLRWVEPYIAYGYPNLKSVRELIYKRGYAKVNKQRLPLTDNTLVEQELGKYGLICVEDLIHEIYTVGPHFKQAANFLWPFKLSSPKGGYKDKKTHFIEGGDAGARGDKINAFIKAVL 237
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BLAST of mRNA_A-nodosum_M_contig91.30.1 vs. uniprot
Match: A0A2D4BFA6_PYTIN (Uncharacterized protein n=3 Tax=Pythium TaxID=4797 RepID=A0A2D4BFA6_PYTIN)

HSP 1 Score: 317 bits (811), Expect = 1.330e-106
Identity = 160/236 (67.80%), Postives = 191/236 (80.93%), Query Frame = 1 
Query:   34 IIPESVLKKRRTKEAIAAKQAAKRDTDAKDAEAKKEEIFKRAERYVKEYRDQENDAIRFRREAKADGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALVKRML 741
            ++PESVLKKRRT E + AK+A K   +    +  ++  FK AE+YVKEYR  E   +  RR+AK+ GN YVPAE+K+  VIRIRGIIGVSPKVRKILQL RLRQI N VFVKLN ATI MLRLVEP++ YGYPNLKT RELIYKRGFGKV  QRI ++DNS++E SLG  GIIC+EDLIHEI+TVGPHFKEA+NFLWPF+LS+PNGG++QKLLHF EGGDAG RG +IN  +K++L
Sbjct:    5 LVPESVLKKRRTVEEVKAKRAVKAQKEKAHRKQVRQIAFKSAEKYVKEYRQIEKQNVLLRRQAKSTGNFYVPAEAKLAFVIRIRGIIGVSPKVRKILQLFRLRQIQNGVFVKLNKATINMLRLVEPFVTYGYPNLKTTRELIYKRGFGKVRGQRIALTDNSIIEKSLGHHGIICIEDLIHEIFTVGPHFKEASNFLWPFQLSSPNGGYKQKLLHFCEGGDAGNRGEEINKFIKKVL 240
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BLAST of mRNA_A-nodosum_M_contig91.30.1 vs. uniprot
Match: F0XYU4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYU4_AURAN)

HSP 1 Score: 314 bits (805), Expect = 1.010e-105
Identity = 164/235 (69.79%), Postives = 191/235 (81.28%), Query Frame = 1 
Query:   37 IPESVLKKRRTKEAIAAKQAAKRDTDAKDAEAKKEEIFKRAERYVKEYRDQENDAIRFRREAKADGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALVKRML 741
            +PESVLKKRRT+ AIA +Q             KKE  FKRAE+Y+ EY+  ENDAIR RREAKA  +IYVP E K+  VIRIRGIIG+SPKV+KILQLLRLRQ+++ VFVKL  AT KMLRLVEPYIAYG PNLK+VRE IYKRG+GKV+K+R+PI +N+VVE  LGK+ IICVEDLIHEIYTVGPHF+EA NFLWP KLS+P GGF+ KLLH+NEGGDAG RG KI+ LVK+ML
Sbjct:    4 VPESVLKKRRTQAAIATEQEXXXXXXXXXXXXKKEVTFKRAEKYMAEYKAAENDAIRLRREAKAANSIYVPPEGKLAFVIRIRGIIGMSPKVKKILQLLRLRQLHSGVFVKLTGATTKMLRLVEPYIAYGEPNLKSVRECIYKRGYGKVNKKRVPIDNNAVVEDVLGKYDIICVEDLIHEIYTVGPHFREAANFLWPVKLSSPTGGFKAKLLHYNEGGDAGYRGEKIHELVKKML 238
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BLAST of mRNA_A-nodosum_M_contig91.30.1 vs. uniprot
Match: A0A0W8C759_PHYNI (60S ribosomal protein L7 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C759_PHYNI)

HSP 1 Score: 315 bits (808), Expect = 2.390e-105
Identity = 161/238 (67.65%), Postives = 191/238 (80.25%), Query Frame = 1 
Query:   28 KPIIPESVLKKRRTKEAIAAKQAAKRDTDAKDAEAKKEEIFKRAERYVKEYRDQENDAIRFRREAKADGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALVKRML 741
            K ++PES+LKKRRT E + AK+AAK   D    +  ++  FK AE+Y+KEYR  E  A+  RR+AK+ GN YVPAE+K   VIRIRGIIGVSPKVRKILQLLRLRQI N VFVKLN ATI MLRLVEP++ YGYPNLK  RELIYKRGFGKV  QRIP+++NSV+E SLG  GIIC+EDLIHEI+TVG HFK+A NFLWPF+LS+PNGG+ +KLLHF EGGDAG RGA+IN  +K+ L
Sbjct:   57 KVLVPESILKKRRTLEQVKAKRAAKAAADRVHRKKVRQIAFKSAEKYIKEYRQLEKQAVTLRRQAKSTGNFYVPAEAKFAFVIRIRGIIGVSPKVRKILQLLRLRQIQNGVFVKLNKATINMLRLVEPFVTYGYPNLKVTRELIYKRGFGKVRGQRIPLTNNSVIEKSLGHVGIICIEDLIHEIFTVGEHFKQAANFLWPFQLSSPNGGYTKKLLHFAEGGDAGNRGAEINKFIKQCL 294
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BLAST of mRNA_A-nodosum_M_contig91.30.1 vs. uniprot
Match: A0A7S1G5B0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5B0_9STRA)

HSP 1 Score: 312 bits (800), Expect = 6.250e-105
Identity = 161/235 (68.51%), Postives = 192/235 (81.70%), Query Frame = 1 
Query:   37 IPESVLKKRRTKEAIAAKQAAKRDTDAKDAEAKKEEIFKRAERYVKEYRDQENDAIRFRREAKADGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALVKRML 741
            +PESV K+R+  E + AK+ A+     +DA+  + E FKRAE+YVKEYR +E   +R RR+AK  GN +V  E K+ LV+RIRGI+GVSPKVRKILQLLRLRQINN VFV++N AT  ML +VEPYIA+GYPNLKTVREL+YKRGFGKV+KQRIP++DNSV+EG LGK  IICVEDL+HEI TVGP FKEANNFLWPFKLS+P GGF +KL HFNEGG+AG R  KINALV+RML
Sbjct:    6 VPESVFKRRKGLEELKAKREARHAAVRRDAKKNRTEAFKRAEKYVKEYRAEERSLLRLRRQAKKAGNFFVEPEGKLALVVRIRGIMGVSPKVRKILQLLRLRQINNAVFVRINKATRNMLTIVEPYIAWGYPNLKTVRELVYKRGFGKVNKQRIPLTDNSVIEGVLGKKDIICVEDLVHEITTVGPAFKEANNFLWPFKLSSPLGGFSKKLRHFNEGGEAGCREDKINALVQRML 240
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig91.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCF0_ECTSI2.580e-14587.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CG85_9STRA2.030e-11772.57Ribosomal protein L30, ferredoxin-like fold domain... [more]
A0A7S3V109_9STRA4.290e-11270.76Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2WW50_9STRA2.970e-10972.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4E8W3_9STRA3.220e-10969.20Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9CRP3_9STRA1.030e-10768.51Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2D4BFA6_PYTIN1.330e-10667.80Uncharacterized protein n=3 Tax=Pythium TaxID=4797... [more]
F0XYU4_AURAN1.010e-10569.79Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A0W8C759_PHYNI2.390e-10567.6560S ribosomal protein L7 n=3 Tax=Phytophthora TaxI... [more]
A0A7S1G5B0_9STRA6.250e-10568.51Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig91contigA-nodosum_M_contig91:486765..494234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCF0
Preferred nameRPL7
PFAMsRibosomal_L30,Ribosomal_L30_N
Model size744
Max annot lvl2759|Eukaryota
KEGG koko:K02937,ko:K08819,ko:K19933
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000172,GO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001889,GO:0002165,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008033,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030312,GO:0030490,GO:0030684,GO:0030687,GO:0031090,GO:0031099,GO:0031100,GO:0031672,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035073,GO:0035210,GO:0042254,GO:0042273,GO:0042274,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1905267,GO:1990904
Exons2
Evalue4.23e-146
EggNOG OGsCOG1841@1|root,KOG3184@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L30, ferredoxin-like fold domain
Ec32 orthologEc-26_004750.1
EC2.7.11.22,2.7.11.23
Descriptionmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size744
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870361.6756818-CDS-A-nodosum_M_contig91:486764..4868841680870361.6756818-CDS-A-nodosum_M_contig91:486764..486884Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig91 486765..486884 +
1680870361.7086773-CDS-A-nodosum_M_contig91:493610..4942341680870361.7086773-CDS-A-nodosum_M_contig91:493610..494234Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig91 493611..494234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig91.30.1prot_A-nodosum_M_contig91.30.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig91 486765..494234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig91.30.1

>prot_A-nodosum_M_contig91.30.1 ID=prot_A-nodosum_M_contig91.30.1|Name=mRNA_A-nodosum_M_contig91.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=248bp
MTAKTKGETKPIIPESVLKKRRTKEAIAAKQAAKRDTDAKDAEAKKEEIF
KRAERYVKEYRDQENDAIRFRREAKADGNIYVPAESKVVLVIRIRGIIGV
SPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVR
ELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHF
KEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALVKRML*
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mRNA from alignment at A-nodosum_M_contig91:486765..494234+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig91.30.1 ID=mRNA_A-nodosum_M_contig91.30.1|Name=mRNA_A-nodosum_M_contig91.30.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7470bp|location=Sequence derived from alignment at A-nodosum_M_contig91:486765..494234+ (Ascophyllum nodosum dioecious)
ATGACCGCCAAGACGAAGGGAGAGACCAAGCCCATCATCCCAGAGTCGGT
ACTCAAGAAGCGCCGCACGAAGGAGGCTATCGCCGCTAAGCAGGCCGCGA
AAAGGGACACCGATGCCAAGGTATGACCATGCTCTATCCGTAGCCACAGA
AATGCCTAGCTCGCCATGGCCGAGGTCGTGAATCCGGACATACGCGGTCG
ACCATCAAGGAGACGCTTCCAACTGTGGAGGATGGCCCATCTTCTCCCTC
GGTCGTCGCTGCAGATCTTCCTCCCCCCATATCCCCTTGCCCGCGTGGAC
TGGTTTAAATTCCCTCCGTGGTCTAACCAGCCCGCGGGCTCCGTCGAGCA
AGGATTTCGTACTGCAGTTCCATATCGAGAGGTCCCCGTTGTAGCCGATC
CGTCGCTTCCCAATTACTTTGTCACGGGTTCAAATTCCTTGTTGAGGTCT
AACCCGGGCATCGTAGGGGCGCCTGAGCTTGGGCTCCTTGAATTATGGTG
GGGCCCAGCGATGACCATGTTACGCCGCCATCTAGGCACCGATGGCCTGA
AACGTTCCATGCCCGTCCCCGGGCCCTCCATCGCTGTGAGTTAACTTTTC
ACTTCTACCTACTGTCTAAAGTTGTACCATGTACATGCCGGTATTATACC
GTCCCAACGAATGTCTGTTCTCTGTTATACCATGCTTCATGTTTTGTACC
TGGTACTCCGTACGAAGCTAAATTACTACATGTACTGACTGCTGTTATGG
TACTTTCCTCGGGGCACTTGAAGCCTACTTATGATGCCTTATCTGAGACG
GTTGCTGTTTCTCGTGGGTAGTTGCCGTAGTGTATTATAGAGCGCACGCA
CAACTGTAACAACTCGTTGACTGCTTTTGTCGTGAACAAACGTTACGACA
GAACCACGAGCATTTTATGTGGTGGTCCTCTTAAAGAAAACTCACTAGAA
AATATAGAAAACAGGGGAAATGTGGGCAGAGAGAGAATCACAAGGTACAA
TATTGATAACCTGCACGTCGTTGGGCTCATCAAACTACTTCATTCATCGG
TTTTCTTTGTTGCAGTAGGTCTATCCGGTCTGTGTACCAGTAACCCTCTC
CGCGAAACAGGTTTTCTGTCTGGGGGCGAACACAATTTTTGCCTTTTTGC
CACCGCCCTCAGGGGCTACCCCAGTGTCCATCACGACGGTCTACTTCACT
ACCGCCGCTTCATATTTTGGAACAAGGCCCGGGTACAACGCATTGGTGTA
GCAGCTGTCGTAGTGTTGCAGCCGACAGGCTGAGCAAAAGCTAGCCGTCC
AACAAGTCTGCAGGTTGTGTTTTAGAACAACCTTCCTCAACAAACCATCT
CAACCACCCGCTTCTGTTCGGACCCCCCCTCTCCGTCTTCAGACGTTTCA
GACTCCAACCCCGACCCCGACTCGGACGCGTCCTTTGTGTCTTCCCCTTC
AGACAAGGGAGGACACAAAGGACGCGTCCGAGTCGGGGTCGGGGTTGGAG
TCTGAAGCGTCTGAAAACGGAGAGGGGGGGTCCGAACAGAAGCGGGTGGT
TGAGATGGTTTGTTGAGGAAGGTTGTTCTAAAATACAACCTGCAGACCTG
TTGGACGACTAGCGTTTGCTCATCCTGTCGGCTGCAACACTACGACAGCT
GCTACACCAACGCGTTGTACCCGGGCCTTGTTCCAAAATATGAAGCGGCG
GTAGTGAAGGAGACCGTTGTGATGGACACTAGCCCCTGAGGGCGGTGGCA
AAAAGGCAAAAATTGTGTTCGCCCGCAGACAGAAAACCTGTTTCGCGGAG
AGGGCTACTGGTACACAGACCGGATAGACCCACTGCAACAACACGTAGAA
TAGCGGGCGCGGGGTTAGTGTTTTTTTGTTGTCAAAGCGTGCTTCATTTG
TCGCGATGTAACTCTGCAATAAATTATGTTAAAAAAAACTAACGCTTGAT
TCGTGATCTACACGGCGAATTTTTAACATCGCGGGACAGCTTCCTGAAGG
TATTATATGCGGCCGAAGGCCGCGAAATATTACAAATTACAACACTTCTG
GATCGAACGGCTGATACTGTACTAGCTACTGCTTCCCATCGAGATACATT
TAACACTTTGTGGGCTTCAGGCGACGCACAGATCCACACTCGCAGGTGTA
CTCCTGCAAAGCTGCCTCATTGTAGTATCGCTGCTAGCTAGGTCGTGCGT
GGAACAGCGGCACAGCATCGTGAGACGTCAAATAGTGCAGCAAAGCGATT
TTTGAAAACACGTATTCAAAATAACCTACAGTACTGTAATAATATTAGAC
ACAAAACACACACACTGTAATAATATTAGAGTCAGTTCAATAGTACTGAA
GTTGTTGTGTACAGATGGTAGAGTAGTAGAAGTAGTATAAACCCGGAATA
TGGCGAAACACAAATTGTGCTATAATACCGTAGTACATTGTCAGGCGACG
ACCCACCAGAGCCAGCATGACTTCTATCGTGGGCAGCTAACACACATCTG
CAGTAAAGCTTGTGGCTGTAGAGACGTGGACTTTGTGTGCAGCAATGCAC
GTTCAGCTCATTCCTTTACAGCCGTCTCCTTTCGTGAAATATCAAGCACA
GCCCGGAGGAAGTTACTGCTGGCCATTGAGATACATATGACTCTGTGGGC
TTCAGGCGACGCACAGACCAACAATCGTCGCAGGTTTACTACGGCAGAGC
TGCCTTATCAAAGTATCGCTGCTAGGCGGTGTGTGGATGACCAAACAATG
GCTCACTCCTCGAGGCCGGTGGTGCATCCTTCTCGAACTTCGTGAAAATA
GAGGATTTCGGTGGGTTATCGGTAGGTACATGCCTCATGAATTTGGGATT
TTGAGGAGCCCCTAAATCTGGTGGGCGAGGTTGACGGTGGCCAACCGATG
GCCCACTTCTGGCACCAGGAGTACGATTTTTGGTCTGAAGGCCTGCCTGC
CTCCAGAAGGTTGCATCCTTCGTCGTGTGTGTCGTGTTTTAAAGAAAAAT
CAGAACGCGCCTAGACCTTCTGATGTGATCCTTTGTCTGGGCTGTCGTCG
CATCGCTTTGATTGGTACCTGCCTATTGAATTTAAGAATTTTGATTGGTA
CATGCCTATTGAATTTAAGAATTTTGATTGGTACATGCCTATTGAATTTA
GGGATTTTGATTGGTACATGCCTATTGAAACCTGTCCCGCTCACATTTGA
ACTCGCCGATCTACACCCCAACATTACTCTACCCTGAATTTTTCAGCTCC
ATCGGATAATTTTCCAAACCCGGGGAGTTTTTGGTACCATCCCCGCTTTC
TGTGTTTTGGCAAATTTGCCACCACGAAAGAGGAAAATGCATTGAAACCC
CGGAACCAAGTACGATTTTGATTTTTTTTCTTCAGCCAAGAATCATAAGT
ATGTTAGGGCCTGCATTAACGATGTTCGGAAAATCAAAATCAAAATTGGG
TTCTGATTGGTCGAGGATCAAAACCTCCTGACTACGCCAGTTTATTTTTT
GGAAATCGCTGCCAAACCAAAGAAGTCCCCAGGGACATAAATGTTTATTT
TTCGGAAATAtTTTTCGGAAAATAAACATTGGAGGTGTTCACCTGATCGA
AGGCTTTCCGAATGCTACACGCCCGAGGCCAGAGCACAGCAGAGTTACAA
CAGCAGCACGTAGACAGACTGCACCGCCACACAATACACACAACTTCTGC
TGGCATGGCCCACGCCAACGGTCCCACGGCGAGGGCAAACGTTAATTCTA
CCAGCTGGTGGTGGGGACAGGAGCAACGAGTGGTGCTGGACTTTGTAGAC
GCCGATACAACCCAAAAGGCGACGGGTGCTACCTCAGCACAGATAGACTT
CGATGTGTAATATGTACCAGTAATAGTTCTACTGATGCTGTTGCCTCTCT
TTCTCTCCCTCTCTCTCTCTCTGTGTCTTTGTTCTAGGGTACCTCACAAC
GACATCGCCATTTATCTACCTGCCCTTTTATTTTTTCGCAGCTACAACGA
AGTGTTTGTACGAACGGCATTTATTCCCTACTACCTCAGCACAGATATAG
ACTTCGTATGTGTATTATGTACCAGTAGTTCTGCTGCTGCTGTTGCCTAT
CTTTCTCTCCCTCTATCTCTCTGTGTCTTTGTTCAGGAGTACCTCACACA
ATATCGCTATTTCTGTACCTACCCTTTTATTATTTCGCAGCTACAACGAA
GTGTTTGTACAAACAGCATTTATTGCCTGCTTCCCTTCTGGCAAGTATTG
TTTTGCGATGTGACCACGGGCCTGATTCTTTGCACGCCGTTATATGCGAC
AAATTGGTATTTTTTACCGGGGGATGCTCAGAAGGTCTAGGCGCCTTCAG
ATTTTTAAAAAATAACAACAGCACCACAGTCACCACCACCAACATTAGAA
GCGAGGTAGGGTACTGTCCACCCGCACGTCGAAAGCACGGAAGGTAAACT
ATATAAAAGGTCGAAGTCCATACACGTTGTGAACTGTCCATTACGGTGAG
GTCATCAGTACAGCAGTGGTAGTAGTACTGTGAGGTGTTCCCATGGAGTT
TTCCAGGATTTTTCCAACGCCACAAGAGGTTTTCCATACTGGCGGCGTAA
ACAGCTCCGGACAGTCCGTTCGAGTATTTTCCGTTAACATGGCTCTCAGT
GTTTTTTAAGAAATCAAACGTTTATTTTTGATTTTTGATTTTCCGAACAT
CGTTAATACAGGCCCTTATAGGATTATGTGATTCAAAAATCAGAAGAGGG
GGGGTGAAAAACCGCCCCCCCCCCCCCGAAAAAATTCCAGCTTGATCACG
GAAGCCGCCTTGGGTAGGGTGTGTTTCCGGTATGGTTCGGTTCCTTGCAT
CTTGTGACCACGGCTGGATTCGTAGCGGAACAGAGATGAACAACAATTTT
GTCTAGAAATTTGTGCTGCAACATTTGGTGCTCACATTACTGGTCAGACT
TGTACTCTACGAAGCTTCAAGGTACTGCTGTGTGGAGTTTAAGAAAAATT
AGAAAGCGCCTAGACCTTCTGATAGTGGGACTGCCCTGCTCTCAACCCAA
AAGTTCTCTCGCTTTTCATATACTCGGAGCACAAAGTACAAATATAGCTC
TAATGGTGTAGTGTAGGTCTTCCTCATAGACAAACGAGATTCGATACAAG
GTTGGTATTTTTTTCTTCTTGACATATCTTTCTGCTCTTAAGTCGCTTGT
TGCAAAAGGGAAAAATTGTTGAGAAGAGAAAACCAACTTGGCCGACAAAA
GTATTTGTACTGTAAATAGGAAGAAAACTTACATTGACTGCTCTATAATA
CTCTCGTACCGTACATGGCCTCTTTTTTTGTTCCATCGGTGACTACTTTC
CCGTCGTGCAGCACGTGAACGCATCGACTCGATGCACCCGTCTTTCACTC
ACACCATGTAACGGTACAAGTGAAGATAACATTTTCTTGTCCTGTCAGCT
CTTGGAAGGCTACTAAGGGCACTGTGCTGTTATTACAATTATAGAAGTAT
AAGAAAAAAATAAGTATGTTTTGACATTTAAAATAACTGGAAAAAGTCGT
CCAGTACTTTGGCATCTGAACCGACGATCAAATTCTTTAGCATCTGAACC
AAGTAATTTATAAAAGTTACTTTGTAAGTCATTTAAATACATCGCCGGTA
CTTTCAACATGCCCACTTGATACCAATAGTGGGTGTGGGAAAGAGAGGCG
CATATTAGGCCGGTCGACCCCGGTAGCTCAGTTGGCACCTCGTAACCTTC
TGACACGTTGGGACGTGAGTTCGATCCCGGCAAACGGGATTTTTCTCACT
AGAAACTAAAAAACCAAAATAAAAATGCCCAACGGGTGGAGAACGATTAA
TTCGTTAGTACACAAAAATTCGACTTCACGGTCGACGAGGGAAAGGAATG
GCTGAATCCTTCTCGCGACAAAAATCAAGGCACGCACCGCAGAAGGAAGG
TGGATTAGAAATCCTGTGTGACCTTCCTCCTATGTGACTCCGGCTGGTAC
GTCCAACGAACTTGATGTCCAGAATGGATGGGAAGAAAACACACACACAC
ACACACATATTAATTGGTCCATCGTGACCTGCCCAGGCAGCACTCGTTCG
GAACTACCTTGAGATTTACTGGCCCTATGCCGGCGGACTCTCGGCAGTGA
ACGCCATCGGTACGCAATTGCGTGACCCGATTGATTTGGGACTGACCCGA
TGGCGTATGACGGTTTTAAATAAATAAATGGACGCCGCCGCGGAACTCGG
GAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAAC
AGGCTGAAGCGGGACGGGACTGCCGAACCCGTCTCGCGAGACCAAATTCT
CAGGCGCGAACGCGGACAGGGAAATATAAATTTTCCCTATTCAGCTGACC
ACGTGCAGGATTGGCAACCTTACCGGGTTGATTCATACTCTTGCTACATG
TGTGACCATGCATACATAATTGCAAGTACAGATAATAAAAAGAATTGCAC
TATAATTTTGTAATACTGACACAAAGAGTAGTGGGGTACCAGGCTTGCCT
CAACGTTCACAGTACATGCTCTCATTTCATTGGGTGTGCCGCTGGTGGGA
TGGTGGACATAACGAGGTCAAGAGTGAGGCTTCGTTGGGCAAAATCGGTA
GTCGTATAGCAGATTCGGCAGTAAAACCCTTGCGCTTTCTTTTTCAAAGC
CTCCCGAGCGTCTAATGCCCTGATAAGTTGTAATCCTTGACGACATTGTC
CGTAACACTCTCTTGATCACGTGGTGGGCATCTTTGCGCTGTCGTCCAAT
TGTGTACTCCTTGACACTGTGCTCCGATCTATGTAAAACAAAACAGGACG
CCGAGGCCAAGAAGGAGGAGATCTTCAAGCGCGCCGAGCGTTACGTGAAG
GAATACCGTGACCAGGAAAACGATGCGATCCGCTTCCGCCGCGAGGCGAA
GGCAGACGGAAACATTTACGTACCCGCCGAGTCTAAGGTGGTACTCGTGA
TCCGCATCCGAGGTATCATCGGGGTCTCGCCTAAGGTTCGCAAGATCCTG
CAGCTGTTGCGCCTTCGCCAGATCAACAACACGGTCTTCGTGAAGCTGAA
CGCGGCAACCATCAAGATGCTCCGCCTCGTGGAGCCGTACATCGCCTACG
GCTACCCCAACCTCAAGACCGTGCGCGAGCTTATCTACAAGCGCGGCTTC
GGAAAGGTCAGCAAGCAGCGTATCCCAATCTCGGATAACTCCGTCGTAGA
GGGATCTCTCGGCAAGTTCGGTATCATCTGTGTGGAGGATCTGATCCACG
AGATCTACACGGTGGGACCGCACTTCAAGGAGGCCAACAACTTCCTGTGG
CCCTTCAAGCTCTCCAACCCCAATGGCGGGTTCCGCCAGAAGCTGCTCCA
CTTCAACGAGGGTGGCGACGCCGGCCAGCGTGGGGCGAAGATCAACGCCC
TCGTCAAGCGCATGCTCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig91:486765..494234+

>mRNA_A-nodosum_M_contig91.30.1 ID=mRNA_A-nodosum_M_contig91.30.1|Name=mRNA_A-nodosum_M_contig91.30.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at A-nodosum_M_contig91:486765..494234+ (Ascophyllum nodosum dioecious)
ATGACCGCCAAGACGAAGGGAGAGACCAAGCCCATCATCCCAGAGTCGGT
ACTCAAGAAGCGCCGCACGAAGGAGGCTATCGCCGCTAAGCAGGCCGCGA
AAAGGGACACCGATGCCAAGGACGCCGAGGCCAAGAAGGAGGAGATCTTC
AAGCGCGCCGAGCGTTACGTGAAGGAATACCGTGACCAGGAAAACGATGC
GATCCGCTTCCGCCGCGAGGCGAAGGCAGACGGAAACATTTACGTACCCG
CCGAGTCTAAGGTGGTACTCGTGATCCGCATCCGAGGTATCATCGGGGTC
TCGCCTAAGGTTCGCAAGATCCTGCAGCTGTTGCGCCTTCGCCAGATCAA
CAACACGGTCTTCGTGAAGCTGAACGCGGCAACCATCAAGATGCTCCGCC
TCGTGGAGCCGTACATCGCCTACGGCTACCCCAACCTCAAGACCGTGCGC
GAGCTTATCTACAAGCGCGGCTTCGGAAAGGTCAGCAAGCAGCGTATCCC
AATCTCGGATAACTCCGTCGTAGAGGGATCTCTCGGCAAGTTCGGTATCA
TCTGTGTGGAGGATCTGATCCACGAGATCTACACGGTGGGACCGCACTTC
AAGGAGGCCAACAACTTCCTGTGGCCCTTCAAGCTCTCCAACCCCAATGG
CGGGTTCCGCCAGAAGCTGCTCCACTTCAACGAGGGTGGCGACGCCGGCC
AGCGTGGGGCGAAGATCAACGCCCTCGTCAAGCGCATGCTCTGA
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