mRNA_A-nodosum_M_contig90.19.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig90.19.1
Unique NamemRNA_A-nodosum_M_contig90.19.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig90.19.1 vs. uniprot
Match: A0A8J2WSX8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSX8_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.990e-17
Identity = 41/64 (64.06%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 CKSQDVSHFAAFFIVVGAKTSVAETS-------------YGNDPSAGSPTETLLRLHLPLNVEV 153
            C S  VSHFAAFFIVVGAKTS  ++              YGNDPSAGSPTETLLRLHLPLN E+
Sbjct:    1 CNSHYVSHFAAFFIVVGAKTSAGKSCMAFSLLSKPEDGYYGNDPSAGSPTETLLRLHLPLNSEL 64          
BLAST of mRNA_A-nodosum_M_contig90.19.1 vs. uniprot
Match: F0YAU5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAU5_AURAN)

HSP 1 Score: 74.7 bits (182), Expect = 1.070e-16
Identity = 40/58 (68.97%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 CKSQDVSHFAAFFIVVGAKTSVAET-------SYGNDPSAGSPTETLLRLHLPLNVEV 153
            C S  VSHFAAFFIVVGAKTS  ++          NDPSAGSPTETLLRLHLPLN EV
Sbjct:    1 CNSHYVSHFAAFFIVVGAKTSAGKSCMAFRLIKISNDPSAGSPTETLLRLHLPLNSEV 58          
BLAST of mRNA_A-nodosum_M_contig90.19.1 vs. uniprot
Match: F0XYG7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYG7_AURAN)

HSP 1 Score: 75.1 bits (183), Expect = 1.460e-16
Identity = 40/58 (68.97%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    1 CKSQDVSHFAAFFIVVGAKTSVAE-------TSYGNDPSAGSPTETLLRLHLPLNVEV 153
            C S  VSHFAAFFIVVGAKTS  +       T+  NDPSAGSPTETLLRLHLPLN E+
Sbjct:    1 CNSHYVSHFAAFFIVVGAKTSAGKKYTEVRGTNKSNDPSAGSPTETLLRLHLPLNSEL 58          
BLAST of mRNA_A-nodosum_M_contig90.19.1 vs. uniprot
Match: F0XYK3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYK3_AURAN)

HSP 1 Score: 73.6 bits (179), Expect = 5.960e-16
Identity = 39/58 (67.24%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 CKSQDVSHFAAFFIVVGAKTSVAET-------SYGNDPSAGSPTETLLRLHLPLNVEV 153
            C S  VSHFAAFFIVVGAKTS  ++          NDPSAGSPTETLLRLHLPLN E+
Sbjct:    1 CNSHYVSHFAAFFIVVGAKTSAGKSCMAFRLIKISNDPSAGSPTETLLRLHLPLNSEL 58          
BLAST of mRNA_A-nodosum_M_contig90.19.1 vs. uniprot
Match: A0A6A5KWQ8_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KWQ8_LUPAL)

HSP 1 Score: 74.7 bits (182), Expect = 2.270e-14
Identity = 43/82 (52.44%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    1 CKSQDVSHFAAFFIVVGAKTSVAETSY-------------------------------GNDPSAGSPTETLLRLHLPLNVEV 153
            C SQDVSHFAAFFIV+GAKTSVAE++                                GNDPSAGSPTETLLRLHLPL+ E+
Sbjct:  291 CNSQDVSHFAAFFIVIGAKTSVAESAEASLHQTETKVPRVNISPSSCESETSVFCFGCGNDPSAGSPTETLLRLHLPLDDEI 372          
BLAST of mRNA_A-nodosum_M_contig90.19.1 vs. uniprot
Match: R1BK99_EMIHU (Uncharacterized protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BK99_EMIHU)

HSP 1 Score: 60.5 bits (145), Expect = 1.220e-10
Identity = 37/64 (57.81%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 CKSQDVSHFAAFFIVVGAKTSVAE---TSYG----------NDPSAGSPTETLLRLHLPLNVEV 153
            C S  VSHFAAFFIV  AK S+     T YG          NDPSAGSPTETL RL LPLN +V
Sbjct:    1 CNSHYVSHFAAFFIVARAKISIGRSCGTGYGATSVWVGKTGNDPSAGSPTETLSRLLLPLNDKV 64          
BLAST of mRNA_A-nodosum_M_contig90.19.1 vs. uniprot
Match: M2MHS9_BAUPA (Uncharacterized protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2MHS9_BAUPA)

HSP 1 Score: 59.3 bits (142), Expect = 1.820e-10
Identity = 33/47 (70.21%), Postives = 34/47 (72.34%), Query Frame = 2
Query:   14 TYRISLRSSS*WEPRHPSLK-----PRMVMILPQVHLRKPCYDFTFL 139
            TYRISLRSSS  EPR P LK     P  VMI PQVHLR+PCYDF FL
Sbjct:   26 TYRISLRSSSMPEPRDPLLKVGPGGPCSVMIPPQVHLRRPCYDFYFL 72          
BLAST of mRNA_A-nodosum_M_contig90.19.1 vs. uniprot
Match: M2Q0E7_CERS8 (Uncharacterized protein n=1 Tax=Ceriporiopsis subvermispora (strain B) TaxID=914234 RepID=M2Q0E7_CERS8)

HSP 1 Score: 58.5 bits (140), Expect = 7.840e-10
Identity = 33/59 (55.93%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 CKSQDVSHFAAFFIVVGAKTSVAET--------SYGNDPSAGSPTETLLRLHLPLNVEV 153
            C S  +SHFAAFFIV   K S+            + NDPSAGSPTETLLRL LPLN +V
Sbjct:    6 CNSHYLSHFAAFFIVARTKRSIGRMIINALKIEPFINDPSAGSPTETLLRLLLPLNDQV 64          
BLAST of mRNA_A-nodosum_M_contig90.19.1 vs. uniprot
Match: Q7RFP9_PLAYO (Uncharacterized protein n=1 Tax=Plasmodium yoelii yoelii TaxID=73239 RepID=Q7RFP9_PLAYO)

HSP 1 Score: 57.0 bits (136), Expect = 2.950e-9
Identity = 33/53 (62.26%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 CKSQDVSHFAAFFIVVGAKTSVAET-----SYGN-DPSAGSPTETLLRLHLPL 141
            C    +SHFAA FI VG KTS+ +      SY N DPSAGSPTETLLRL LPL
Sbjct:    6 CNFHCLSHFAAAFIAVGTKTSIVKIYTIFKSYNNNDPSAGSPTETLLRLLLPL 58          
BLAST of mRNA_A-nodosum_M_contig90.19.1 vs. uniprot
Match: M2QSQ3_COCSN (Uncharacterized protein n=3 Tax=Pleosporineae TaxID=715340 RepID=M2QSQ3_COCSN)

HSP 1 Score: 54.7 bits (130), Expect = 1.510e-8
Identity = 34/56 (60.71%), Postives = 35/56 (62.50%), Query Frame = 2
Query:   14 TYRISLRSSS*WEPRHPSLK-------PRM-------VMILPQVHLRKPCYDFTFL 139
            TYRISLRSSS  EPR P LK       PR        VMI PQVHLR+PCYDF FL
Sbjct:   26 TYRISLRSSSMPEPRDPLLKVVIITFRPRSQAFIFCCVMIPPQVHLRRPCYDFYFL 81          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig90.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2WSX8_9STRA5.990e-1764.06Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
F0YAU5_AURAN1.070e-1668.97Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
F0XYG7_AURAN1.460e-1668.97Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
F0XYK3_AURAN5.960e-1667.24Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6A5KWQ8_LUPAL2.270e-1452.44Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
R1BK99_EMIHU1.220e-1057.81Uncharacterized protein (Fragment) n=3 Tax=Emilian... [more]
M2MHS9_BAUPA1.820e-1070.21Uncharacterized protein n=1 Tax=Baudoinia panameri... [more]
M2Q0E7_CERS87.840e-1055.93Uncharacterized protein n=1 Tax=Ceriporiopsis subv... [more]
Q7RFP9_PLAYO2.950e-962.26Uncharacterized protein n=1 Tax=Plasmodium yoelii ... [more]
M2QSQ3_COCSN1.510e-860.71Uncharacterized protein n=3 Tax=Pleosporineae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig90contigA-nodosum_M_contig90:307177..307755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009033256.1
Model size156
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue2.4e-17
EggNOG OGs2CZCW@1|root,2S9RN@2759|Eukaryota
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870341.4404671-CDS-A-nodosum_M_contig90:307176..3072491680870341.4404671-CDS-A-nodosum_M_contig90:307176..307249Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig90 307177..307249 +
1680870341.4514341-CDS-A-nodosum_M_contig90:307672..3077551680870341.4514341-CDS-A-nodosum_M_contig90:307672..307755Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig90 307673..307755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig90.19.1prot_A-nodosum_M_contig90.19.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig90 307177..307755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig90.19.1

>prot_A-nodosum_M_contig90.19.1 ID=prot_A-nodosum_M_contig90.19.1|Name=mRNA_A-nodosum_M_contig90.19.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
CKSQDVSHFAAFFIVVGAKTSVAETSYGNDPSAGSPTETLLRLHLPLNVE
V*
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mRNA from alignment at A-nodosum_M_contig90:307177..307755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig90.19.1 ID=mRNA_A-nodosum_M_contig90.19.1|Name=mRNA_A-nodosum_M_contig90.19.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=579bp|location=Sequence derived from alignment at A-nodosum_M_contig90:307177..307755+ (Ascophyllum nodosum dioecious)
TGCAAGTCGCAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTAGTGGG AGCCAAGACATCCGTCGCTGAAAGTTTTTAGTCGTTACGTATAAGTAATG CTCGGTCGGAGAGCCTAAGAAAGGCTCCCCTTCCGATGATTCAGATTCCG CTCTTGATTCGTTTCGTGGTCGACTTGATTTGGGGGCTGCGTGTATTACA CCCGCAGCCTCGACGAGGAGCCACTCGTCCGCGTTCGTCCCAAGCAACGA ACAACAATCTTTCCGTAAAGTGGTCCCCCGCGGGCGGGAAAACGAAAGTG CGGTCATCTCTCGGCCGCTTCCTGCCCGCAGGAGAGAAAGGTTCCAACTG CGGCCGAGACTTCTCTCGGCCGCTTCCTGCCCCCAGCAGGAGAATAATCA TTCATTACTTAAATAACAAGGCCGTTTAACGGCCTCGCCAAAGAAACAAA TAATGATAAATAACATAAATAAATGGGGTACGAGACTCGTAATGAGCCTC GTATGGTAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGAC TTCACCTTCCTCTAAATGTTGAGGTTTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig90:307177..307755+

>mRNA_A-nodosum_M_contig90.19.1 ID=mRNA_A-nodosum_M_contig90.19.1|Name=mRNA_A-nodosum_M_contig90.19.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig90:307177..307755+ (Ascophyllum nodosum dioecious)
TGCAAGTCGCAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTAGTGGG
AGCCAAGACATCCGTCGCTGAAACCTCGTATGGTAATGATCCTTCCGCAG
GTTCACCTACGGAAACCTTGTTACGACTTCACCTTCCTCTAAATGTTGAG
GTTTAG
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