mRNA_A-nodosum_M_contig90.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig90.18.1
Unique NamemRNA_A-nodosum_M_contig90.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig90.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig90contigA-nodosum_M_contig90:287530..294334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size402
Hectar predicted targeting categoryother localisation
Exons3
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870338.779992-CDS-A-nodosum_M_contig90:287529..2876441680870338.779992-CDS-A-nodosum_M_contig90:287529..287644Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig90 287530..287644 -
1680870338.7954443-CDS-A-nodosum_M_contig90:288245..2884211680870338.7954443-CDS-A-nodosum_M_contig90:288245..288421Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig90 288246..288421 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870338.8067145-UTR-A-nodosum_M_contig90:288421..2884541680870338.8067145-UTR-A-nodosum_M_contig90:288421..288454Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig90 288422..288454 -
1680870338.817714-UTR-A-nodosum_M_contig90:294256..2943341680870338.817714-UTR-A-nodosum_M_contig90:294256..294334Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig90 294257..294334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig90.18.1prot_A-nodosum_M_contig90.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig90 287530..288421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig90.18.1

>prot_A-nodosum_M_contig90.18.1 ID=prot_A-nodosum_M_contig90.18.1|Name=mRNA_A-nodosum_M_contig90.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=97bp
MLKKVELAPEGRTSSASKPLVLKANVLFGISDNDGEHKEGKSAKMWTGGS
VDGSTWRTGFAPTVVPETPRCRRRVLRYLSNSMEAAPPLHERAMEPK
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mRNA from alignment at A-nodosum_M_contig90:287530..294334-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig90.18.1 ID=mRNA_A-nodosum_M_contig90.18.1|Name=mRNA_A-nodosum_M_contig90.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6805bp|location=Sequence derived from alignment at A-nodosum_M_contig90:287530..294334- (Ascophyllum nodosum dioecious)
GTGCCAGCCCATGAGAGTGACTTTATAGCCTCTGTGCGAGTGCGGCCTTT
GTGATGGGTCTCCTTCAAGAAACGCAAGGTACCGCACTCCATATTCTCAA
AGACGTTTGCTTTCCCTTGTTGTTGGTAAACGTTTTCAAGTTGGTAAACG
TTTTCAATAGACGAGGAGGAAACTTCTGGCAATCGCGTATGCCCCTTCAC
GCTGACGGTTTTGTTTCATAACAGGCATCTCTCATGGCAAATGACAAGCC
TGAGATTTCTGCCATCGTCGCTGCTTTCGTAAATACTTTGGATGATGAAA
TTATTTGATGCGGTACCACGCAGGCAGATTAGTCGTTTGGTTTTAAAAAA
TCAGACCATTTGTTCCCATAGTCTATAGATTCACATAGTGATACCCATAG
TGATATGTACTACTTATGAAATCATATTATTATTTCTATGGTACTGTACT
GCAGTGTACTATACTACTAGATTACTAGGCGGGGGTTGATCTTTCGTTAA
ATACGTATAACAAAAGGTATTGTACAATTTCCCAGGATTGCGTCTACATC
TATACCTAAAACTCCCCTTCGGTGACACCCATCCGATCCTAGATTTAATG
TAACAAGCTCCAAAGGTCTAGGTGCGTTCTGATGGTTCTTAAAAGAGTTG
GGTTATCACTGGTGGCTGTGCATGGTGATTAATATAAGTGTACAGTATAA
CGATGGGCTTCTCCCCGACATTATACTGTTGACCCAAGGTCACTACCATT
GGGGAACCCGTTTAAATACCATGTAGTGGCTTTGCATTCATCAGGGCTCT
ACATGGTAATTTTACCGCGGTTGTTTACCGCGGTTTTTACAGCGATAAGG
CTTACCATGGGTATACCGTGGTCGCGAGCTACCATATACCGTACCGTTTA
AAAACCGTACCATTTCTACCATATACCATTTTGTACAGTAGTATTTAACG
AAAACCGTACCATACACCGTTTTGAACCGTGGGATTCTTCAGCAACCATA
CACCGTGCCAGTGTACATAAACAGAAGTCTAACGCGGTAATTCATCCTAT
TCTTCAGCAACCATATACCGTGCCATACACTTAACATGTACATAAACAGG
TACATAAACAGAAGTCTACCACGGTTGTCAAAATGACATCAGGTTGTCCA
TCGATTATACAAATATACAAATACTACATGTAGTAAAACACACAGCAGTT
GTCACTACATAGGTACAGGAGCATAGGTATACTTGATATTTGGCGACAAA
TCCCGACTGTGGTATGTGGTATGCATACGAGTATTGTACTTGTCAGGGGA
TGTTTGGTATGTGTGTGAAGTTGGTGCACAAAGCACTTCGAGATGATGGG
GGACGGCGTCTTGACGAAGGACGTGTTCATAGCGTTTACCGTGGACCAAG
GCGCAAACGTGGTCAACACCATAGAAGCACTGGGCGTCATTGTGGTTCTG
TCTTGCGCTCACCGCTTGAGCACGGTGGTAGTCTGGATGCTGGGCATTGG
CGGCACGGTGAACACGTCCAGGAACAAGCCGATGGAGGTTCTGATGAGGA
AGCTGGCGGCGTGCTTAGGTAAGTTCAGTCACTCAGCCGTCAACAACAGC
GAGCTGAAGGCACTGCAAGAGCTAGTTCCTCAGTTCAGCAAAATCTACGA
GCTCATCAGGCGCAACGACACCCGGTGGGTTTGAGTTCGTTTTTTCTGTT
TATTTTTCTGTTTCCGTGTCTGCAGTAGCTCACGGTCGTTAGACATATTA
ATATCGACACTTGATCATTGATATTTGAACTGCCATCCTTGCTTCGTGTT
CACATTTTCGTACTTTCGTTTATGTTCAATCTTGAATGTGCAACCCTGAC
CCCCGCGACTGGTTGTTTTAGCCGAACCGTACTTACCGGTATGTAATGTT
TTCCAAGTTTTCCCGGTTTGTTTGTGTTGTTTCGTGCCTTTTAATTTTGT
TGACTGTTGTGCTTGCCGATGTTGGGTTTAGTACAGTTATATTTTTTCAC
AACATGAAGGCCTGACCAGCGCAACCTCCTACCTCCGTGAGAGCTGTATA
AACTAGTTTCACCCTTTAACATTTATGTGTTATATAATTGGTCTAAACCA
TGCTTATTTTTCACTGTTACTACGTTCTTCCACACAGGTGGACCACTCAG
AGGAACATGATGGACCGCCTTCTTCTTCTGAAAGCCGCGGTCGTCGAACA
CTTCAGGTTGCACGCTTCCGACAAGAGGAGACTGTCCGTTCGTGAGTGGT
CGGTCATCGACGAGGTGTGCAGCGTGCTGGACCCCGTGGCGGAGGTCAAC
ACCAAGGTCCAAGGAGCGGAGGACACCTACATCAGTCAGGCGACCTTCCT
CATGACGGAACTGCTGGCCATCATGGGGTCTGGGCCGTTTCGCATCCGCA
CGCCAGACAAACCGCAGGTGGACCCCGTTCCATACGACGACGCGGAGACT
TCCGATCTCTGCGGTGAGGTGCGGACAGCGGTGGACGTGTGCGTAAAGTA
CATGGGCAAGAAGAACCTGGGCGAGGTGGGCAACCCTGTCGAGCGCATCA
GTACTCTGCTGGACCCGCGGCGGAAAACCCTGTCGAAGCAAGAGTGCGTC
AACGGCAGCCCCGACGTAAAGCAGCTCGCGATCAATGAACTGAAGGATGT
GGCGGATTTGTTTGAGGGCTCGGCGCCGCAACAAACTACTGTCTCTGCGG
CATCGGCCTCTGCCCCTGCCCCCGCCCCTGCGTCAGCACTAGCCCCATCC
CCTGCGCCTCCCCCTGCTCCAGCCCCTGGTGGCGACGGGGCCACGGAGCC
ACTGGCAAAGAAGCCGCGGGTGCTATCCGTTATAGACCAGCGACGCGCCG
AAAGACTGGCTGCCACTGGGAGTGCGGGTGCCGCTGGAGATGAGGCGGAG
AGCGGCTCGGGGCCAAGCATCACGCACAACGTCCGCATTCTCCAAGAGCT
GACGAGGTATGTAGCAGAAGGGGTGGAGCTGGAAGAGGACGGATTTTCCT
TGCCGGGGTTTGGGGGCGAAGGAGCCCCCCTAAGCTTTCTCAAGCGACAG
GCGAGGTTATCGAGGAAGCGGCTATGCCGCATCTCGCACTCCTAGCACGC
CTTTACCACGGGGTCGAGGCCGCGAGCTGCCAGGCTGAGCGAAACTTTTC
TGCTCTCGCTCTGCTCATCGGCAACATGCGGTCGACCAGATGATGTTCTC
GAGGCTGAACCAGAGGTGTCTCCCGGAGATTGCGGCGTACAACAGGGTCA
TCGACAGGCAGCAGGCGCGCCGAAACCAGTGCAGAGAGGACACTGACAAG
GCGCAGAACGAGGGGGCCGGCGATTTGATTGAGATCGACCTGTGGATGAT
GGTGACAGCGCATACCACACAGGACGGAGAGAGAGGGAGAGAGGGCGAGG
CGCGCGGGCGGGGGGGGATAGGGTCGCAGAACGTGTAGAGTACAAATGGA
TACGTTGGGCTTAGAGCCCAGTGTTCTGAGAACGAATAACGAGGTCAGTT
GCATAGAAGTTGCATAGAAGTCCAGGACTGCGTTGTGTCAGCCCGTGTTA
CCGTAACCGCGCCGTTTGCCTACCGCACAGAAAATTGATACTTCGAAGTA
CCATATACCGTGCCATTTGCCTACCGCGAAGAAAAATTGTTACCATATAT
CGTGCCATTTGCTTACCGCAATGTTGGGATACCGTAACCAAATACCATTT
GAAAAACCGTGGTGTGGACAAACGTACCATCAGACACCGTAGACTCAGAT
ACCATATACCGCACCGTTTGAAAAACCGTGGAACTTCCAAACCGTACCAT
TTTCTCCGATTTTCATCGCACAATATATTTGCAGCCTATGATCCCACTTA
AACGTTTTGACATTTTTTCCCCCTGACTGGGGGATGCTCAAAAGGTCTAG
GTGCCTTCGGATTTTTCTTTAAATAAGTGTCATCGAACAATGTATTTGCA
GCCTATGATCCCACTTAAACGTTTGACATTTTTTCCCCCTGACTGGGGGA
TGCTCAGAAGGTCTAGGTGCCTTCGGATTTTTCTTTAAATAAGTGTCATC
GAACAATGTATTTGCAGCCTATGATCCCACCTGAACGTTTGACATTTTTT
CCCCCTGACTGGGGGATGCTCAGAAGGTCTAGGTGCCTTCTGATTTTTCT
TTAAATAAGTGTTATCGAACAATGTATTTGCAGCCTATGATCCCACCTAA
ACGTTTGACATTTCCCCCCCCTGACTGGGGGATGCTCAGAAGGTCTAGGT
GCGTCCTGATTTTTCTTTAAATAAGTGTCATCGAACAATGTATTTGCAGC
CTATGATCCCACCTTAACGTTTGACATTTTTTCCCCCTGACTGGGGGATG
CTCAGAAGGTCTAGGTGCCTTCTGATTTTTCTTTAAATAAGTGTCATCGA
ACAATGTATTTTCAGCCTATGATCCCACCTTAACGTTTGACATTTCCCCC
CCCTGACTGGGGGATGCTCAGAAGGTCTAGGTGCCTTCTGATTTTTCTTT
AAATAAGTGTCATCGAACAATGTATTTGCAGCCTATGATCCCACTTTAAC
GTTTGACATTTTTTCCCCCTGACTGGGGGATGCTCAGAAGGTCTAGGTGC
CTTCTGATTTTTCATTAAAAAAGTGCCATCGAACAATGTATTTGCAGCCT
ATGATCCCACCTGAACGTTTGACATTTTTGCCCCCTGACTGGGGGATGCT
CAGAAGGTCTAGGTGCATTCTGATTTTTCTTCAAAATACCACAATGCACT
GTATGTGTGTATGTATGGTCATAAAATTACATATAACAGAGTATGGATCA
ACCGGTTAAGGTTGTCAATCCTGCTAGTGGTCAGCTGAACAGGGAAAATG
AATATTCCCCTGTCCCCGTGCGTGTCTGAGCATTTGGTCTCCCGACGCGA
GACGGGTTCAGCCGTCCCGTCCCGCGTCAGCCCGCTCATCTCCATACTCA
GGCCGAATCTGGTGCTTACTTACGGGATTCTTCCCGAGTTTCGCGGCGGC
GTCCATTTATTCATTCAAAACCGACTTCACGTGCAACTTAGCACATCGTA
AGCATGCCTCTTCACCCAACGCACCCCCACCCCCACGAAAACACCTCGTG
GCTTCATCCTAAACCCCTTCCACAATCTCCCTGCCGACCCCGAACTATTT
GCTATCGGACGAAAAAGGTCTTTGATGATTTCGCCGAGATTTTCTTCCGG
CCTTCCGTTGAAGCTCATAGGGGCTCTGCGCCGACCACATCTCACAGAGC
TTGACCTGGAACGATCTCACCGGGAACAGCGAATCTTTTAAGGAGGCGTT
CCGCGAGGAGGCGTGCGAATTTTTCTAGTAAACGGTAACGAGTAACCTCT
ATTCTGCGATATAAAATATAGAAGCGACCGAACCCGCGTTGAATCTCAAT
GGAGCATAACTCATGAATCTCTTTAAATGTTTTATAACACCCATCCGATC
CTAGATGTAATGTAACAAACTGAGTTGTAACCCAAGCTTTCCATGTATTC
TGTGTTTGTGCGATACCCTTGCAGGGCAATCGATGATATTGTACAGTATA
CTAGTGGTACTATTATCGACATTAGTACTATCCTCGTAACTATGTACTAC
AGTGGTTATGTTGGATTATGATTGATGGCTGTGCATCGTGATTAATATAA
GTTTACAGTATAACGGTGGGCTTCTCCCCGACATTATACTGTCAACGTTA
TTTTCATCGGGGAACCCGGTTAAATGCCATGAAGAGGTTTTGTATTATTT
GCAGCCTTTGATCCCACCTAAACGTTTGACATTTTTTTCCTCCCATAACT
GGGGGATGCTCAGAAGGTCTAGGTGCGTTCTGATTTTTCTTTAAGCACCT
CTCTCTCTGCCCGTTTTCCACGAATGATAGGTTAGACCAACGGCCGTGGA
AACCGCGCTCAAAATGCTCAAGAAGGTCGAACTCGCACCCGAGGGGCGGA
CTTCAAGTGCTTCCAAGCCCCTCGTCTTGAAAGCCAATGTCCTCTTCGGG
ATTTCCGACAACGACGGGGAACACAAGGAGGGGAAATCGGCTAAGATGTG
GACAGGGGGCAGTGTTGACGGAAGCACATGGAGGACCGGGTGAGGCTCAT
CTGCATCTTTGATTAGGTATACAATAGCGATATTTTACACTGAACACGTG
TCACACCACTTCGACCTGCTTCGAGAGTCAAGAAAGAAAACGTGTTGAGG
GGCAAGTGTGGCCGGAGGGGTTGACGTATGTATTTTCAATTCAGGGCGTG
TTTTCTCAGCCGCATGAACGCCGACGACGTTACCCTAGAAGACACAGAGA
GATATTTCGCGCCTTACATCAGAGACGTGCCCTTACTCCGTAAATATAAT
GTCGGTACGATCAGTGTCTTGGCTGTTCATCACACTGTCTTGTGCATCAG
GTTCCGCGCTGAAAACGGCTAACATGGTATAGAAGTTGTGTGTTTACTTT
TATCCGGACACTTCGAGCGCTCCGCCACAAACCCGTTTCGCGAGACCAGA
TTGTCAGGCTCCCACGGGGTCTTTGTTCAGCTGACTACGAGCAGGATAGG
CAACCTTACCCCGTTGATCCATACTCTGCTATACGTGATGACTACACATA
CATACTTCGAACACTCGTCATGCAAGTATAAGTCTCTCGGAAATGGTCTC
CGTCACACGTTGCCGTTGCCGCCACCTGCCTTTCCTGCAGCTTTGCTCCT
ACAGTTGTGCCCGAAACACCAAGATGTAGACGAAGGGTTCTCCGATATTT
GAGCAACAGTATGGAAGCCGCGCCACCTCTGCACGAGCGAGCCATGGAGC
CGAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig90:287530..294334-

>mRNA_A-nodosum_M_contig90.18.1 ID=mRNA_A-nodosum_M_contig90.18.1|Name=mRNA_A-nodosum_M_contig90.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=291bp|location=Sequence derived from alignment at A-nodosum_M_contig90:287530..294334- (Ascophyllum nodosum dioecious)
ATGCTCAAGAAGGTCGAACTCGCACCCGAGGGGCGGACTTCAAGTGCTTC
CAAGCCCCTCGTCTTGAAAGCCAATGTCCTCTTCGGGATTTCCGACAACG
ACGGGGAACACAAGGAGGGGAAATCGGCTAAGATGTGGACAGGGGGCAGT
GTTGACGGAAGCACATGGAGGACCGGCTTTGCTCCTACAGTTGTGCCCGA
AACACCAAGATGTAGACGAAGGGTTCTCCGATATTTGAGCAACAGTATGG
AAGCCGCGCCACCTCTGCACGAGCGAGCCATGGAGCCGAAG
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