mRNA_A-nodosum_M_contig9.23.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9.23.1
Unique NamemRNA_A-nodosum_M_contig9.23.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9contigA-nodosum_M_contig9:454854..455207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size193
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870331.5697541-CDS-A-nodosum_M_contig9:454853..4549611680870331.5697541-CDS-A-nodosum_M_contig9:454853..454961Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9 454854..454961 -
1680870331.5811486-CDS-A-nodosum_M_contig9:455124..4552051680870331.5811486-CDS-A-nodosum_M_contig9:455124..455205Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9 455125..455205 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870331.5965817-UTR-A-nodosum_M_contig9:455205..4552071680870331.5965817-UTR-A-nodosum_M_contig9:455205..455207Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9 455206..455207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9.23.1prot_A-nodosum_M_contig9.23.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9 454854..455205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9.23.1

>prot_A-nodosum_M_contig9.23.1 ID=prot_A-nodosum_M_contig9.23.1|Name=mRNA_A-nodosum_M_contig9.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
MTILQQLRSPVSARTAKKVKTDAVFVQVFREFEEIFFQPSVEAHQGYHGN
RIPATLTWRDITG
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mRNA from alignment at A-nodosum_M_contig9:454854..455207-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9.23.1 ID=mRNA_A-nodosum_M_contig9.23.1|Name=mRNA_A-nodosum_M_contig9.23.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at A-nodosum_M_contig9:454854..455207- (Ascophyllum nodosum dioecious)
GGATGACGATTCTCCAACAACTACGATCACCTGTCTCTGCACGAACGGCA
AAGAAGGTTAAAACAGACGCCGTTTTCGTGCAGGTTCGTTTCCCACGGAT
CGACTTCACGTCCAACTTAACACATCGTAGGCATGCCTTTTCACCAACGC
ACCCCACCCCCACGAAAACACCTCGTGGCTTCATCCTAAACCCTGCTTCG
ACTTGCTCCGTGCCGACCGCGTACTATCTACTATCGGATTTAAAAGGTCT
TCCGTGAGTTCGAGGAGATCTTCTTCCAGCCCTCGGTCGAAGCTCACCAG
GGCTACCACGGCAACCGCATCCCGGCAACCCTGACATGGCGCGATATCAC
GGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9:454854..455207-

>mRNA_A-nodosum_M_contig9.23.1 ID=mRNA_A-nodosum_M_contig9.23.1|Name=mRNA_A-nodosum_M_contig9.23.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig9:454854..455207- (Ascophyllum nodosum dioecious)
ATGACGATTCTCCAACAACTACGATCACCTGTCTCTGCACGAACGGCAAA
GAAGGTTAAAACAGACGCCGTTTTCGTGCAGGTCTTCCGTGAGTTCGAGG
AGATCTTCTTCCAGCCCTCGGTCGAAGCTCACCAGGGCTACCACGGCAAC
CGCATCCCGGCAACCCTGACATGGCGCGATATCACGGGG
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