prot_A-nodosum_M_contig898.6.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig898.6.1
Unique Nameprot_A-nodosum_M_contig898.6.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length255
Homology
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BLAST of mRNA_A-nodosum_M_contig898.6.1 vs. uniprot
Match: A0A6H5KEC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC4_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.370e-26
Identity = 115/356 (32.30%), Postives = 145/356 (40.73%), Query Frame = 0 
Query:    1 MSAKQREVSMMEGMRFARKHGLSFFETSALCDRHVEEAFRQLVMSVARYLPQEVSVWSVNTVSKPAYVLPAGWVTVTVD-------------------ASMEQRRKSSRSYDHQRLLQ-------------------------------GSVMPPPXXXXXXXXXXXXXTSSVPSERYRVAS-VAGSPEV--------------------------------------------RTVWFENAWNGNRVAEWPPYPAGPSDACLVSRVARP-------PDPCPGPXXXXXXXXXXXXXXXXXSKAESRKERGGAEGGDRGLRHIFGGMTSALSFSSLKATKGYAAAAAHCLSRCVDS 254
            MS  QREVSM+EGMRFARKHG+ F ETSAL   HVEEA RQL+MSVARYLPQ+  VWS    S P   LP GW+ +T D                     M+     S++    R                                  G+ +P               + S PS   RVAS + GS  +                                            R +W+ENAW G RV+  P +PAGPS+AC+VS+V+R        PDP                      KA+ R    G   G+ G   +  G  S+ SFSS K ++GYAAAA  CLS+C+DS
Sbjct:  144 MSTTQREVSMVEGMRFARKHGMDFVETSALRGLHVEEACRQLIMSVARYLPQDKYVWSKKKRSHP---LPLGWIPITADDWGNDVTGGNEENAYPAIAIRMDGGSGGSKNAVSDRETSVDTXXXXXXXXXXXXXXXXXXXXXXXXYRPSGTRLP----YSGTPITTMDESRSPPSGGGRVASKIFGSSSIKPRGFCSSQNXXXXXXXXXXXXXXXXXXXXXXXXATRPNRVSPPRVLWYENAWTGERVSRRPLHPAGPSEACVVSQVSRTLAPLRYLPDPV---------------------KAKRRGLVFGGGEGEAGAAMV--GDRSSWSFSSFK-SRGYAAAA-ECLSKCLDS 467
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BLAST of mRNA_A-nodosum_M_contig898.6.1 vs. uniprot
Match: D8LDH8_ECTSI (Rab11C, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH8_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.020e-17
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0 
Query:    1 MSAKQREVSMMEGMRFARKHGLSFFETSALCDRHVEEAFRQLVMSVARYLPQEVSVWS 58
            MS  QREVSM+EGMRFARKHG+ F ETSAL   HVEEA RQL+MSVARYLPQ+  VWS
Sbjct:  144 MSTTQREVSMVEGMRFARKHGMDFVETSALRGLHVEEACRQLIMSVARYLPQDKCVWS 201
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig898.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEC4_9PHAE1.370e-2632.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDH8_ECTSI1.020e-1775.86Rab11C, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001806Small GTPasePFAMPF00071Rascoord: 4..46
e-value: 7.3E-6
score: 25.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 2..50
e-value: 3.1E-8
score: 35.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..215
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig898contigA-nodosum_M_contig898:22187..23670 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig898.6.1mRNA_A-nodosum_M_contig898.6.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig898 12484..23672 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig898.6.1 ID=prot_A-nodosum_M_contig898.6.1|Name=mRNA_A-nodosum_M_contig898.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=255bp
MSAKQREVSMMEGMRFARKHGLSFFETSALCDRHVEEAFRQLVMSVARYL
PQEVSVWSVNTVSKPAYVLPAGWVTVTVDASMEQRRKSSRSYDHQRLLQG
SVMPPPPPLPPQRPRRTTSTSSVPSERYRVASVAGSPEVRTVWFENAWNG
NRVAEWPPYPAGPSDACLVSRVARPPDPCPGPVDPCPRTVDPCPRPVDPS
KAESRKERGGAEGGDRGLRHIFGGMTSALSFSSLKATKGYAAAAAHCLSR
CVDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase