mRNA_A-nodosum_M_contig897.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig897.15.1
Unique NamemRNA_A-nodosum_M_contig897.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig897.15.1 vs. uniprot
Match: D8LEJ5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ5_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.640e-15
Identity = 53/97 (54.64%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:    7 GVVRSLSEELEQVRQARNRLDGRRAELQMALGAERLRRAFGVPG------GSGATAVAAADVVEGVFKRWRLACLEERQGRLKRESEENRGKAESFQ 279
            G V SLSEE++ +R +RN LD RR ELQ+ L  E+L+ AFGV G      G G    A   V   VF+RWRLA LE RQG +K ESEENRGKAES++
Sbjct: 2163 GRVVSLSEEVQALRASRNGLDRRRVELQLELAGEKLKNAFGVRGRSGLGLGLGPEFGADLGVAGEVFQRWRLAFLEGRQGAMKSESEENRGKAESYE 2259
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BLAST of mRNA_A-nodosum_M_contig897.15.1 vs. uniprot
Match: A0A6H5K2N6_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.640e-15
Identity = 53/97 (54.64%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:    7 GVVRSLSEELEQVRQARNRLDGRRAELQMALGAERLRRAFGVPG------GSGATAVAAADVVEGVFKRWRLACLEERQGRLKRESEENRGKAESFQ 279
            G V SLSEE++ +R +RN LD RR ELQ+ L  E+L+ AFGV G      G G    A   V   VF+RWRLA LE RQG +K ESEENRGKAES++
Sbjct: 2306 GRVVSLSEEVQALRASRNGLDRRRVELQLELAGEKLKNAFGVGGRSGLGLGLGPEFGADLGVAGEVFQRWRLAFLEGRQGTMKSESEENRGKAESYE 2402
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig897.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEJ5_ECTSI1.640e-1554.64GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2N6_9PHAE1.640e-1554.64GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig897contigA-nodosum_M_contig897:123114..123392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size280
Hectar predicted targeting categoryother localisation
Exons1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870328.40226-CDS-A-nodosum_M_contig897:123113..1233921680870328.40226-CDS-A-nodosum_M_contig897:123113..123392Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig897 123114..123392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig897.15.1prot_A-nodosum_M_contig897.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig897 123114..123392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig897.15.1

>prot_A-nodosum_M_contig897.15.1 ID=prot_A-nodosum_M_contig897.15.1|Name=mRNA_A-nodosum_M_contig897.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
MRGVVRSLSEELEQVRQARNRLDGRRAELQMALGAERLRRAFGVPGGSGA
TAVAAADVVEGVFKRWRLACLEERQGRLKRESEENRGKAESFQ
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mRNA from alignment at A-nodosum_M_contig897:123114..123392-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig897.15.1 ID=mRNA_A-nodosum_M_contig897.15.1|Name=mRNA_A-nodosum_M_contig897.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig897:123114..123392- (Ascophyllum nodosum dioecious)
ATGCGCGGCGTCGTCCGGTCGCTCTCCGAGGAGCTTGAGCAGGTGCGGCA
GGCCCGGAACAGGCTGGACGGGCGTCGGGCAGAGCTACAGATGGCCCTCG
GGGCGGAGAGGCTAAGGCGAGCGTTTGGCGTTCCGGGCGGGTCGGGGGCG
ACTGCTGTTGCGGCGGCAGACGTTGTCGAAGGGGTATTCAAGAGATGGAG
GCTGGCGTGTTTAGAGGAGAGGCAGGGGAGGCTCAAGCGTGAGTCCGAGG
AGAACCGCGGGAAGGCGGAAAGCTTCCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig897:123114..123392-

>mRNA_A-nodosum_M_contig897.15.1 ID=mRNA_A-nodosum_M_contig897.15.1|Name=mRNA_A-nodosum_M_contig897.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig897:123114..123392- (Ascophyllum nodosum dioecious)
ATGCGCGGCGTCGTCCGGTCGCTCTCCGAGGAGCTTGAGCAGGTGCGGCA
GGCCCGGAACAGGCTGGACGGGCGTCGGGCAGAGCTACAGATGGCCCTCG
GGGCGGAGAGGCTAAGGCGAGCGTTTGGCGTTCCGGGCGGGTCGGGGGCG
ACTGCTGTTGCGGCGGCAGACGTTGTCGAAGGGGTATTCAAGAGATGGAG
GCTGGCGTGTTTAGAGGAGAGGCAGGGGAGGCTCAAGCGTGAGTCCGAGG
AGAACCGCGGGAAGGCGGAAAGCTTCCAG
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