mRNA_A-nodosum_M_contig8899.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8899.2.1
Unique NamemRNA_A-nodosum_M_contig8899.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8899.2.1 vs. uniprot
Match: D7G0R4_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R4_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 3.050e-5
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    7 CGKRPSFGVAGTKTAEYCRQHALDGMVNVHGK 102
            CGK P++GV GT   EYCR+HAL GMV+VH K
Sbjct:   50 CGKYPTYGVEGTSNREYCREHALSGMVDVHRK 81
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BLAST of mRNA_A-nodosum_M_contig8899.2.1 vs. uniprot
Match: A0A6H5J7Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z7_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.820e-5
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    7 CGKRPSFGVAGTKTAEYCRQHALDGMVNVHGK 102
            CGK P++GV GT   EYCR+HAL GMV+VH K
Sbjct:   50 CGKYPTYGVEGTSNREYCREHALSGMVDVHRK 81
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8899.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0R4_ECTSI3.050e-565.63EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5J7Z7_9PHAE3.820e-565.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8899contigA-nodosum_M_contig8899:14036..14452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size417
Hectar predicted targeting categoryother localisation
Exons1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870306.5527709-CDS-A-nodosum_M_contig8899:14035..144521680870306.5527709-CDS-A-nodosum_M_contig8899:14035..14452Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8899 14036..14452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8899.2.1prot_A-nodosum_M_contig8899.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8899 14036..14452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8899.2.1

>prot_A-nodosum_M_contig8899.2.1 ID=prot_A-nodosum_M_contig8899.2.1|Name=mRNA_A-nodosum_M_contig8899.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=139bp
KGCGKRPSFGVAGTKTAEYCRQHALDGMVNVHGKVRIEDSGMISAFKVAD
TKTDEHCAQHNRLRSGIKGCRRRWIDPNFSGKKSNGAACPSGSKQKTVHL
SSTQESPFSGSSRGSCKRVRYLHNGPTAMKRAVALESAT
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mRNA from alignment at A-nodosum_M_contig8899:14036..14452-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8899.2.1 ID=mRNA_A-nodosum_M_contig8899.2.1|Name=mRNA_A-nodosum_M_contig8899.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig8899:14036..14452- (Ascophyllum nodosum dioecious)
AAAGGCTGCGGCAAGCGACCGTCGTTCGGTGTGGCAGGTACGAAAACGGC
GGAGTACTGCAGACAGCACGCACTGGACGGGATGGTCAACGTTCACGGAA
AAGTTAGAATCGAAGACTCTGGCATGATTTCTGCGTTTAAAGTAGCAGAT
ACGAAAACGGACGAGCACTGTGCGCAGCACAATAGACTAAGAAGCGGTAT
CAAAGGATGCAGGAGAAGATGGATTGACCCAAACTTCTCCGGGAAGAAAA
GCAATGGTGCCGCATGTCCGAGTGGCTCAAAGCAGAAAACCGTCCATCTT
TCTTCCACCCAGGAAAGCCCTTTCTCGGGTAGTAGCCGGGGCTCTTGTAA
GCGAGTACGATACCTACATAATGGGCCTACAGCTATGAAGCGAGCTGTCG
CACTAGAGTCGGCTACA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8899:14036..14452-

>mRNA_A-nodosum_M_contig8899.2.1 ID=mRNA_A-nodosum_M_contig8899.2.1|Name=mRNA_A-nodosum_M_contig8899.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig8899:14036..14452- (Ascophyllum nodosum dioecious)
AAAGGCTGCGGCAAGCGACCGTCGTTCGGTGTGGCAGGTACGAAAACGGC
GGAGTACTGCAGACAGCACGCACTGGACGGGATGGTCAACGTTCACGGAA
AAGTTAGAATCGAAGACTCTGGCATGATTTCTGCGTTTAAAGTAGCAGAT
ACGAAAACGGACGAGCACTGTGCGCAGCACAATAGACTAAGAAGCGGTAT
CAAAGGATGCAGGAGAAGATGGATTGACCCAAACTTCTCCGGGAAGAAAA
GCAATGGTGCCGCATGTCCGAGTGGCTCAAAGCAGAAAACCGTCCATCTT
TCTTCCACCCAGGAAAGCCCTTTCTCGGGTAGTAGCCGGGGCTCTTGTAA
GCGAGTACGATACCTACATAATGGGCCTACAGCTATGAAGCGAGCTGTCG
CACTAGAGTCGGCTACA
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