mRNA_A-nodosum_M_contig889.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig889.1.1
Unique NamemRNA_A-nodosum_M_contig889.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig889.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig889contigA-nodosum_M_contig889:16822..17190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LFL2
Model size371
Max annot lvl2880.D8LFL2|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.00028
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870305.8345656-CDS-A-nodosum_M_contig889:16821..171601680870305.8345656-CDS-A-nodosum_M_contig889:16821..17160Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig889 16822..17160 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870305.846052-UTR-A-nodosum_M_contig889:17160..171901680870305.846052-UTR-A-nodosum_M_contig889:17160..17190Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig889 17161..17190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig889.1.1prot_A-nodosum_M_contig889.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig889 16822..17160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig889.1.1

>prot_A-nodosum_M_contig889.1.1 ID=prot_A-nodosum_M_contig889.1.1|Name=mRNA_A-nodosum_M_contig889.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=113bp
MVDVKSRKCRTEGCGKLPSFEVAGTKTVEYCAQHAPEEMVDVKSKKCRTK
RYSKKPSFGVADRRTAEYRVQHTRPQCGVEGLREREVDPHHSGKETIANV
IPSVAKHTSVRPP
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mRNA from alignment at A-nodosum_M_contig889:16822..17190-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig889.1.1 ID=mRNA_A-nodosum_M_contig889.1.1|Name=mRNA_A-nodosum_M_contig889.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at A-nodosum_M_contig889:16822..17190- (Ascophyllum nodosum dioecious)
GAGTACTGTGCACAGCACGTACCGGAAGGGATGGTCGACGTCAAGAGCAG
AAAATGCAGAACCGAAGGCTGCGGCAAGCTCCCATCTTTCGAGGTTGCTG
GAACAAAAACGGTTGAGTACTGTGCACAGCACGCACCGGAGGAAATGGTC
GACGTCAAGAGCAAAAAGTGCAGAACCAAACGGTACAGCAAGAAGCCCTC
GTTCGGAGTGGCCGACAGAAGAACGGCGGAGTACCGTGTACAGCACACCA
GACCACAATGCGGTGTCGAGGGATTAAGGGAGAGAGAGGTTGACCCACAC
CACTCCGGGAAGGAAACCATTGCTAACGTAATTCCGAGTGTCGCCAAACA
TACAAGCGTTCGTCCTCCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig889:16822..17190-

>mRNA_A-nodosum_M_contig889.1.1 ID=mRNA_A-nodosum_M_contig889.1.1|Name=mRNA_A-nodosum_M_contig889.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=339bp|location=Sequence derived from alignment at A-nodosum_M_contig889:16822..17190- (Ascophyllum nodosum dioecious)
ATGGTCGACGTCAAGAGCAGAAAATGCAGAACCGAAGGCTGCGGCAAGCT
CCCATCTTTCGAGGTTGCTGGAACAAAAACGGTTGAGTACTGTGCACAGC
ACGCACCGGAGGAAATGGTCGACGTCAAGAGCAAAAAGTGCAGAACCAAA
CGGTACAGCAAGAAGCCCTCGTTCGGAGTGGCCGACAGAAGAACGGCGGA
GTACCGTGTACAGCACACCAGACCACAATGCGGTGTCGAGGGATTAAGGG
AGAGAGAGGTTGACCCACACCACTCCGGGAAGGAAACCATTGCTAACGTA
ATTCCGAGTGTCGCCAAACATACAAGCGTTCGTCCTCCT
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