mRNA_A-nodosum_M_contig880.6.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A6H5JR21_9PHAE (Lipoyl-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR21_9PHAE) HSP 1 Score: 290 bits (742), Expect = 1.500e-92 Identity = 155/193 (80.31%), Postives = 172/193 (89.12%), Query Frame = 3
Query: 3 LGDSISEGTVVQWCKSVGDEVEEDEVVAVVETDKVSVDVRSTHVGVVVKLFAAVDDVIEVGKPLCTIDGDEASVVRAKLEAAEEEEDAKAPPREEKKPNIEDAYAGAFMAGADFVPPKKSSHEPLIKFVGKRSRLKEKEASAQAD-TPVRHRHSPGALDFSQIVGGAMFGRPPMSEEEMAAVDSGGAEAAPQL 578
LGDSISEGTVV+W KSVGDEV EDEV+AVVETDKVSVDVRSTHVGVVVKLFAAVDDV+EVGKPLCTIDGDEASVV+A+++A ++EEDA APP E KKP++EDA A AFMAGADFV P+K SH+PLIKFVGKR+ L EK+ + D P RHRHSPGALDFSQIVGGAMFGRP MSEEEM AVDSGGAEAAPQ+
Sbjct: 98 LGDSISEGTVVEWRKSVGDEVSEDEVIAVVETDKVSVDVRSTHVGVVVKLFAAVDDVVEVGKPLCTIDGDEASVVKARVQAQQDEEDANAPPPELKKPSLEDAMAEAFMAGADFVAPRKKSHKPLIKFVGKRALLTEKKDKKEKDGLPARHRHSPGALDFSQIVGGAMFGRPAMSEEEMEAVDSGGAEAAPQV 290
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A835ZF23_9STRA (Single hybrid motif-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF23_9STRA) HSP 1 Score: 151 bits (381), Expect = 4.190e-39 Identity = 103/209 (49.28%), Postives = 126/209 (60.29%), Query Frame = 3
Query: 3 LGDSISEGTVVQWCKSVGDEVEEDEVVAVVETDKVSVDVRSTHVGVVVKLFAAVDDVIEVGKPLCTIDGDEASVVRAKLEAAEEEEDAKAPPREEKKPNIEDAYAGAFMAGADFVPPKKSSHEPLIKFVGKRSRLKEKEASAQ-------------ADTPVRHRHS-----PGALDFSQIVGGAMFGRPPMSEEEMAAVDSGGAEAAPQ 575
LGDSISEGTVVQW KSVGD V D+VVAVVETDKVSV++RS H GV+ KL AAVDD ++VG PLCT+D EA+ +A+ P +DA A ++GA + + H PLIKFVGKRS+ K++ A A P S PGALDF QIVGGA+ GRP +S+EEM AV+SGGA AP+
Sbjct: 79 LGDSISEGTVVQWLKSVGDLVAVDDVVAVVETDKVSVEIRSPHRGVITKLHAAVDDQVQVGAPLCTLD--EAAAPKAEAPXXXXXXXXXRPE--------DDATLAAHISGA-VLEEQPRRHVPLIKFVGKRSKEKQEAPEASPAXXXXXXXXXXXASKPALRGTSGVRVVPGALDFEQIVGGALVGRPALSQEEMDAVESGGASVAPR 276
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A7S2WFW0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFW0_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.080e-24 Identity = 79/200 (39.50%), Postives = 109/200 (54.50%), Query Frame = 3
Query: 3 LGDSISEGTVVQWCKSVGDEVEEDEVVAVVETDKVSVDVRSTHVGVVVKLFAAVDDVIEVGKPLCTIDGDEASVVRAKLEAAEEEEDAKAPPREEKKPNIEDAYAGAFMAGADFVPPKKSSHEPLIKFVGKRSRLKEK-------EASAQADTPVRH-------RHSPGALDFSQIVGGAMFGRPPMSEEEMAAVDSGGA 560
+GDSI+EGTV+ W K+ GD V+ DE++AVVETDKVSVD+RS H GV+ +++ +D+ VG L +D D A + A AE + DA Y+ + V P S+ P I F+GK + K E+ + PV H+PGA+D + GGAMFGRPP+SE EM AV++GGA
Sbjct: 44 MGDSITEGTVLSWEKNPGDVVQMDEILAVVETDKVSVDIRSPHAGVLQEIYIGLDETAVVGANLFKLDTD-ADISAAPAAPAEAKPDA--------------TYSSS-------VAPPSSARVPSICFLGKEGWARRKHGKADIVESRSSVAMPVPSSLLAEEINHTPGAVDQWTLAGGAMFGRPPISEAEMEAVETGGA 221
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A7S2N435_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N435_9STRA) HSP 1 Score: 108 bits (270), Expect = 2.780e-23 Identity = 78/205 (38.05%), Postives = 112/205 (54.63%), Query Frame = 3
Query: 3 LGDSISEGTVVQWCKSVGDEVEEDEVVAVVETDKVSVDVRSTHVGVVVKLFAAVDDVIEVGKPLCTIDGDEASVVRAKLEAAEEEEDAKAPPREEKKP---NIEDAYAGAFMAGADFVPPKKSSHEPLIKFVGKRSRLKEKEASAQADTPVRHRHSPGALDFSQIV--GGAM---FGRPPMSEEEMAAVDSGGAEAAPQLRYIDG 593
+GDSI+EGT+V+W SVG V E +VVA VETDKV+VD+++ GV+V+ F VDD +EVG L ID + + V E + EE+ AP KP ++E+ G++ P++SS P I F+GK K + AD P + S IV G + +GRP SE+EM A+ +GGA AP++ + G
Sbjct: 79 MGDSITEGTIVEWTVSVGQAVSEGDVVAQVETDKVTVDIKADMDGVIVEHFGEVDDTVEVGADLYKIDTEGKATVAGSYEISPTEEETSAP-----KPVATDVEEEAEGSYAVSPSPPSPEQSSRVPSIHFLGKEGWAARK-SGKPADVPPAFTAAKKVAGGSDIVYDGSGLPSTYGRPAFSEDEMEALITGGANLAPKVVKLSG 277
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A7S2MS94_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MS94_9STRA) HSP 1 Score: 107 bits (266), Expect = 3.450e-23 Identity = 80/194 (41.24%), Postives = 106/194 (54.64%), Query Frame = 3
Query: 3 LGDSISEGTVVQWCKSVGDEVEEDEVVAVVETDKVSVDVRSTHVGVVVKLFAAVDDVIEVGKPLCTIDGDEASVVRAKLEAAEEEEDAKAPPREEKKPNIEDAYAGAFMAGADFVPPKKSSHEPLIKFVGKRSRLKEKEASAQADTPVRHRHSPGALDF------SQIV--GGAMFGRPPMSEEEMAAVDSGGA 560
+GDSI+EGT++ W K VGD V D+++AV+ETDKVSVDVR+TH GV+++ FA DD +EVG L ID + +A +E + + P E A A+ S+ P IKF+GK ++K SA DTP +P S IV G AMFGR PMS+ EM AV+SGGA
Sbjct: 53 MGDSITEGTLLSWEKHVGDSVNIDDIIAVIETDKVSVDVRATHPGVIMEAFAKADDNVEVGDALLRIDVQSS-------DAMADETVSPSKPTE------------TMSATAEEPGHSSSTRVPSIKFLGKEGWRQQKTTSAVVDTPTPTVPAPTGPQVGVRFGDSPIVPVGSAMFGRLPMSDAEMDAVESGGA 227
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A7S4QTR8_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QTR8_9STRA) HSP 1 Score: 102 bits (254), Expect = 3.460e-21 Identity = 74/202 (36.63%), Postives = 110/202 (54.46%), Query Frame = 3
Query: 3 LGDSISEGTVVQWCKSVGDEVEEDEVVAVVETDKVSVDVRSTHVGVVVKLFAAVDDVIEVGKPLCTIDGDEASVVRAKLEAAEEEEDAKAPPREEKKPNIEDAYAGAFMAGADFVPPKKSSHEPLIKFVGKRS-RLKEKEASAQADTPVRHRHSPGALDFSQIVGGA----MFGRPPMSEEEMAAVDSGGAEAAPQLRYIDG 593
+GDSISEGT+V+W VG V E +VVA VETDKV+VD+++ GV+V+ F VDD +EVG L ID + V E + +E+ + P E + +E+ G++ P + P I F+GK + A T V+ + +PG D I+ G+ M+GRP SE EM A+ +GGA AP+++ + G
Sbjct: 68 MGDSISEGTIVEWTAVVGQAVSEGDVVAQVETDKVTVDIKADMDGVIVEHFGNVDDTVEVGADLYKIDTEATPTVSGSYEISPQEDTSPHPKTEATE--VEEEVVGSYTVTDTPTPVR----VPSIHFLGKDGWAARRNNVEPPAFTGVKVKRTPGGPDI--ILDGSGLTPMYGRPAFSEAEMEALITGGASQAPKVKKLSG 261
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A4D9D5P5_9STRA (Lipoyl-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5P5_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.060e-20 Identity = 76/200 (38.00%), Postives = 104/200 (52.00%), Query Frame = 3
Query: 3 LGDSISEGTVVQWCKSVGDEVEEDEVVAVVETDKVSVDVRSTHVGVVVKLFAAVDDVIEVGKPLCTIDGDEASVVRAKLEAAEEEEDAKAPPREEKKPNIEDAYAGAFMAGADFVPPKKSSHE-PLIKFVGKRSRLKEKEASAQA----------DTPVRH---RHSPGALDFSQIVGGAMFGRPPMSEEEMAAVDSGGA 560
+GDSI+EGT+ W K VG+ V D+VV V+ETDKVSVD+R+++ GV+V+ +AAVDD +EVG L ID AA A +H PLIKF+GKRS ++++++SAQ P RH R +PG F ++ FG PP++EEEM AV+SGGA
Sbjct: 11 MGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQA---------AASAPSSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHRTPLIKFLGKRSLMRKQDSSAQXXXXXXXARSPSLPARHEDSRSTPGVKTFIELP--PRFGHPPVTEEEMEAVESGGA 199
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A7R9ZQW1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQW1_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.610e-19 Identity = 72/198 (36.36%), Postives = 99/198 (50.00%), Query Frame = 3
Query: 3 LGDSISEGTVVQWCKSVGDEVEEDEVVAVVETDKVSVDVRSTHVGVVVKLFAAVDDVIEVGKPLCTIDGDEASVVRAKLEAAEEEEDAKAPPREEKKPNIEDAYAGAFMAGADFVPPKKSSHE-PLIKFVGKRSRLKEKEASAQADTPVRHRHSPGALDFSQIVGGAMFGRPPMSEEEMAAVDSGGAEAAPQLRYIDG 593
+GD+I+EGT+V+W VG V+ D+VV +VETDKV++D+++ + GV+ F AVDD IEVG L ID + + V A ++P E + A KSSH P IKF+GK K S AD P + + I FGRP +EEEM A+ GGA AP++R G
Sbjct: 64 MGDAITEGTIVEWVAEVGQAVQPDDVVVLVETDKVTIDIKADYEGVITAHFGAVDDNIEVGADLYEIDSEATATVVA----------GESPSAEINAGDASGESEAVVAASETKTESSKSSHRVPSIKFLGKEGWAKRLSPSTAADASSSDGQPP--VIYGDIP--PNFGRPVFTEEEMDALVQGGANLAPEVREHSG 247
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A7S2K3E5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3E5_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 3.160e-19 Identity = 80/216 (37.04%), Postives = 122/216 (56.48%), Query Frame = 3
Query: 3 LGDSISEGTVVQWCKSVGDEVEEDEVVAVVETDKVSVDVRSTHVGVVVKLFAAVDDVIEVGKPLCTIDGDEASVVRAKLEAAEEEEDAKAPPREEKK----PNIEDAYAGAFMAGADFVPPKKSSHEPLIKFVGKRS----RLKEKEASAQADTPVRHRHSPGALDFSQ-IVGGA-----MFGRPPMSEEEMAAVDSGGAEAAPQL-RYIDGSRWA 605
+GDSI+EGT+V+W K VG+ V D+VVA+VETDKV+V++++ GV+++ F AVDD +EVG PL ID D A + +A +++ + PP E K NI + + + + + S P IKF+GK R+ + E + + G LD SQ I+ A M+GRP +EEEM ++ GGA AP+L RY G++++
Sbjct: 55 MGDSITEGTIVEWSKGVGEAVGVDDVVALVETDKVTVEIKAETQGVILERFGAVDDTVEVGAPLYAIDTD-ADMTQAVAQSSNK------PPVSEVKVETVANIAEPPSKVQIPSSAVASVR--SRIPSIKFLGKAGWSARRINDSETANLGNAS-------GLLDGSQKIILEAPSIDPMYGRPIFTEEEMESLMMGGASNAPKLLRYSSGAKFS 254
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Match: A0A7S1Y4U1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y4U1_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 3.460e-19 Identity = 71/193 (36.79%), Postives = 95/193 (49.22%), Query Frame = 3
Query: 3 LGDSISEGTVVQWCKSVGDEVEEDEVVAVVETDKVSVDVRSTHVGVVVKLFAAVDDVIEVGKPLCTIDGDEASVVRAKLEAAEEEEDAKAPPREEKKPNIEDAYAGAFMAGADFVPPKKSSHEPLIKFVGKRSRLKEKEAS-AQADTPVRHRHSPGALDFSQIVGGAMFGRPPMSEEEMAAVDSGGAEAAPQL 578
+GDSI+EGT+V+W +VG VE D+VVA++ETDKV+VD+++ GV+ K F AVDD +EVG L ID + + V A DA P A VPP P I F+GK ++ A A DTP+ +M+GRP SE EM A+ GGA AP +
Sbjct: 38 MGDSITEGTIVEWTAAVGQAVETDDVVALIETDKVTVDIKADRNGVITKQFGAVDDTVEVGSSLYEIDTNAEATVSA---------DA---PXXXXXXXXXXXXXXXXXXXAVSVPPTAQLRTPSITFLGKEGWMRRLSAQEAVPDTPIS----------------SMYGRPVFSETEMEALILGGANVAPSV 202 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig880.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig880.6.1 >prot_A-nodosum_M_contig880.6.1 ID=prot_A-nodosum_M_contig880.6.1|Name=mRNA_A-nodosum_M_contig880.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=95bp MAGADFVPPKKSSHEPLIKFVGKRSRLKEKEASAQADTPVRHRHSPGALDback to top mRNA from alignment at A-nodosum_M_contig880:91896..95329- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig880.6.1 ID=mRNA_A-nodosum_M_contig880.6.1|Name=mRNA_A-nodosum_M_contig880.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3434bp|location=Sequence derived from alignment at A-nodosum_M_contig880:91896..95329- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig880:91896..95329- >mRNA_A-nodosum_M_contig880.6.1 ID=mRNA_A-nodosum_M_contig880.6.1|Name=mRNA_A-nodosum_M_contig880.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=285bp|location=Sequence derived from alignment at A-nodosum_M_contig880:91896..95329- (Ascophyllum nodosum dioecious)back to top |