mRNA_A-nodosum_M_contig874.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig874.9.1
Unique NamemRNA_A-nodosum_M_contig874.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig874.9.1 vs. uniprot
Match: A0A6H5KQY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.870e-17
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 3 
Query:    3 EARASRRKDDRELKEYVQTLEVHLDQLSREKQEVEASMVESVREETAKAFKEAQERDKAAAEAAAHEVHQLRADLEATRTLMETALREK 269
            EAR++RRKDDR+LKEYV TLEVHLDQLS+EKQE + +M+E VR ETAKA K+      AAAEAA  EV Q+RA+LEA + L+E AL+EK
Sbjct:  366 EARSNRRKDDRQLKEYVHTLEVHLDQLSKEKQESKTAMLEVVRAETAKALKQGSHATAAAAEAANEEVRQVRAELEAAQALLEEALKEK 454
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BLAST of mRNA_A-nodosum_M_contig874.9.1 vs. uniprot
Match: D8LGX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGX5_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 7.800e-17
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 3 
Query:    3 EARASRRKDDRELKEYVQTLEVHLDQLSREKQEVEASMVESVREETAKAFKEAQERDKAAAEAAAHEVHQLRADLEATRTLMETALREK 269
            EAR++RRKDDR+LKEYV TLEVHLDQLS+EKQE E +M+E+VR ET KA K+      AAA AA  EV Q RA+LEA + L+E AL+EK
Sbjct:  362 EARSNRRKDDRQLKEYVHTLEVHLDQLSKEKQESETAMLEAVRAETTKALKQGSHATAAAAAAADEEVRQARAELEAAQALLEEALKEK 450
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig874.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQY4_9PHAE1.870e-1765.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGX5_ECTSI7.800e-1764.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig874contigA-nodosum_M_contig874:43137..47735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1460
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_001550.1
Cds size735
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig874.9.1prot_A-nodosum_M_contig874.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig874 43528..47123 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870271.2710905-UTR-A-nodosum_M_contig874:43136..432161680870271.2710905-UTR-A-nodosum_M_contig874:43136..43216Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig874 43137..43216 +
1680870271.281731-UTR-A-nodosum_M_contig874:43494..435271680870271.281731-UTR-A-nodosum_M_contig874:43494..43527Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig874 43495..43527 +
1680870271.35967-UTR-A-nodosum_M_contig874:47123..477351680870271.35967-UTR-A-nodosum_M_contig874:47123..47735Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig874 47124..47735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870271.2965565-CDS-A-nodosum_M_contig874:43527..435811680870271.2965565-CDS-A-nodosum_M_contig874:43527..43581Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig874 43528..43581 +
1680870271.313119-CDS-A-nodosum_M_contig874:44804..450331680870271.313119-CDS-A-nodosum_M_contig874:44804..45033Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig874 44805..45033 +
1680870271.3249898-CDS-A-nodosum_M_contig874:45940..460311680870271.3249898-CDS-A-nodosum_M_contig874:45940..46031Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig874 45941..46031 +
1680870271.33607-CDS-A-nodosum_M_contig874:46289..465311680870271.33607-CDS-A-nodosum_M_contig874:46289..46531Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig874 46290..46531 +
1680870271.3488925-CDS-A-nodosum_M_contig874:47004..471231680870271.3488925-CDS-A-nodosum_M_contig874:47004..47123Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig874 47005..47123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig874.9.1

>prot_A-nodosum_M_contig874.9.1 ID=prot_A-nodosum_M_contig874.9.1|Name=mRNA_A-nodosum_M_contig874.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=245bp
MVESVREETAKAFKEAQERDKAAAEAAAHEVHQLRADLEATRTLMETALR
EKETVLQEKEAILQEKETILREKEAAEEEKVVADALLRKEEGRGGRNFLW
RNAFGLRGGGRRHCDEASHDGKTLSIFRKGDRAFREGDRAAAGDKRVTNP
APRGSCREGRASERRRGGGGGASERRCGGGGGASGSGATRGGGYMPTGNG
ERSCRGKGTPAEPDGSATKRHARRPETTASGGESPASCPGQRRR*
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mRNA from alignment at A-nodosum_M_contig874:43137..47735+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig874.9.1 ID=mRNA_A-nodosum_M_contig874.9.1|Name=mRNA_A-nodosum_M_contig874.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4599bp|location=Sequence derived from alignment at A-nodosum_M_contig874:43137..47735+ (Ascophyllum nodosum dioecious)
AAGAGGCTAGGGCGAGCAGGCGCAAGGACGATCGGGAGCTCAAGGAGTAC
GTGCAGACGCTCGAGGTCCATCTGGATCAGGTCAGCATTGGGTGCTTTGT
GTGAGCCTCAACATTCTAGAGACGGAGATACGGTGGCGGTGATTAATAAA
TCTATAGTTCATGCATTTTGCGAAGCGAGCATCTCTGTTTTTCTTTGATA
CAACAGAAACTGGCACACCGCTCGAGGTTCGAGGCATTTGTAGGAGTTGA
TTCAGGACCTGTATTGGGCGCTCGTCGCAAACCATATCACGATACTCTAT
CCTTTTCCGTACCGTTTCGGTTCTTTTTTGTGGTTCCGTTCCGTCTTGCT
CTGGCCAGTTGTCTCGGGAGAAGCAGGAAGTGGAGGCGAGCATGGTGGAG
TCCGTCAGAGAAGAGACCGCGAAGGCCTTCAAAGAGGCGCAAGAGGTGAC
TCTCCGTTCGCCGCCGGTCTGACTACTCCGCTGTTTAGCGCGTCGATGTG
TGTATGTGTTGTGTGGCGAAAACTGTTTAGAGCGTGGGAATATTGCGTTG
CCCGCCACGTGGCGGTTGGACCGCACGCGCGGGCCGAGACTCGCATAGGC
ATAGGTTTCCATGTGTTCGGCGGGCGGATCTTGTGTCCTTCGTTGTTTTG
TTTTCTGCTGTTACGTTTTCTACCGTTTATTTTTGTTTTAATTGTTATAT
TACGTTAATGAAGCCTCTATTTATAGGGGTGTTCGACCGAAAGGAGAGAG
AGAGCCTGCAGGGACAAGGGAGACAACATCTGCCCGACGACCGCAGGGGA
TTGCGGTAGTCTCCTcccccCCCCCCCCCCGTCCCATCGAATCTCGGTAA
AAATATACTGCCGTGTACTGTTGGTACTAATTCAATACATTGCCCTCCGG
GCAAGTAGGGGGCCTCAGCGTCGTGTGTATGTTTGGTCATCACATATGGC
AAGAGTAAGGATCAACCGGGTGAGATTGCCAATCCTGCTCGTGGTCAGCT
GAACAGGGAAAATTGTTTTTCCCTGTCCCTGTTCGCGCCTGAGAATTTGG
TCTCGCGAGACGGGTTCGGCATTCCTGTCCTGCGTCAGCCTTCTCATCTC
CATACTCAGACTGAATATGGTGTTTACGTACGGGATTCCTCCCGAGTTCC
GCGGCGGCGTCTATTTATTTATTCAAAACCGCCATACGCCATCGGGTCAG
TACCGAGTTTATCGAGTTACGCAATTGCGTACCGATGGCGTTCACTGCCG
AGCATCCGCCGGCACAGGGCAAGTAAACCTCAAGGTAGTTCCAAATGTGT
GCTACCTTGGCAGGTCACCATGGACCGATTAATATGGGCATCTCTTTCCC
ACACCCACTATTGGCATGAAGTGGGCATGTTGATAGTACCGACGGTAGGC
CATTCAATATTCAGAGGGAGCATAGAATGAAGACAAAAGTATGAGGTTGC
CGCAACACGGTATAGCACTTCAGCAGTACCTCGCGCGTTGACACTCTCCG
CTGTCCGCGAAGCCCATACATTTTGTTTTTTGTCATCCCGGCGCGGCTGT
GACTTGTCACTCTTAACCTCCCCCCCCCGCAACGCCCCACGTTTTTGTTG
TGACAAACGTTTTTTCACGATTTATCTCCCCCACCCTGCTGGCCGACCGG
TGCTCGGGGTTCCCATAGCGGGATAAGGCGGCAGCGGAAGCGGCCGCGCA
TGAAGTGCATCAGCTGAGAGCCGACCTCGAGGCGACGCGGACCTTGATGG
AGACGGCTCTGCGAGAAAAGGAAACGGTTCTCCAGGAAAAAGAGGCGATT
CTCCAAGAAAAGGAAACGATCTTGAGAGAAAAAGAGGCGGCTGAGGAGGA
GAAGGTCGTGGCGGATGCACTCCTTAGGAAGGAAGAAGGGAGAGGAGGTG
AGTGAGCGTTTCCGTCGCTCGGAAAATCGACTCGAGAGGAGTTGCCCCAA
CAGCGCACTTTTTGCCTTGTTTTCGGTACATTTTGGGCGTAGTGTAGATG
CTATGTACTGGCGGGGACAACTTTATGTCTATTTCTCGGAAGTTGGGGGG
GGGGGGCGGCTGTGTGTGTGTGTTGTATTTTTTTGTGTGGTCGCCCCGGT
AGCTCAGAGGTACCATGCAACCTCTGACACGTTGGGACGTGAGTTCGATC
CCGGCAAACGGGATTTTTCTCACTGAAAAACTAAAAAATGAAAATAAAAA
TAAAAATGCCCAACGGGTGGAGAACGATTAAATCGTTAGTACACAAAATT
CGACGTCACGGTCGACGAGGGAAAGGAATGGCTGAATCCTTCTCGCGAGA
AAAATTAAGGCAAGCACCGCAGAAAGAGGGTGGATGGAAAATCCTGTGTT
ACCTTCTTCCTGTGTGACCCCGGCTGGTACGTCCATTGAAGTCCAGAATG
AATGGGAAGAAAACACACACAAAACACACTTGTAGTCCTCTCCTGCAATG
TGATAAAACAGCTGTATCACGGTAAGTTAAAAAAACTGCTGTGTAAAATG
CGCGTATACGTAGTTGGTACGGTAGTCGGGGAGTTTTTGCTCTAGATTCC
GGCCAGAGACTCCAATGAATCTCTTTCAAGAGCCGTTCCAAAGAACTGCG
CTTGCGAGCTCGGTTCCTCTTGCGTACGTGATCCAAACAGTACTTTAGTC
CCATCGGGGGTATTTCAATTATGTTAAGGCGTTTGATTCGCTTTCTTCTG
CGATTACGCGCGCACGCGTTTTTCTTTTCCTTTTTTTCCCATTTTTTTGT
GTTGTGTGTTTCTGTTTTTGTTTGTGTTGTTGTCTTGTGGTTGTGTTCCA
TCAGGAAGGAATTTTCTTTGGCGGAACGCTTTCGGATTGCGGGGGGGTGG
ACGTCGCCACTGTGATGAGGCCTCTCATGATGGGAAAACCCTAAGGCATG
TGGGTATAGTCTTTGGAGCGACACCGTTCAGTGTTTTCCTTCCAGCCTTT
TTCGGAGAGTGCAGCCTTGAGAGGTTTTTGTTGTTTGGTTTTTTCTCCTT
TTTTGTTTTGTTACGAAAACCGTTATTCTACACATGAAATAAGTGCCAAC
TACGCCCCCCCCCGCCCTCCCCCCGACTCTCTCGTAATCCCTCTTTCTCT
CGTTGAACTCCCGACCTTGATTCGACACGCTTACGCGCTCCTTATCAAAC
CAGCATCTTTAGAAAAGGAGATAGAGCATTTAGAGAAGGAGATAGAGCAG
CTGCGGGAGACAAGCGCGTTACAAACCCAGCGCCTCGAGGAAGCTGTCGC
GAAGGCCGAGCGAGCGAGCGAAGACGCGGTGGCGGCGGCGGAGCGAGCGA
GCGAAGATGCGGTGGCGGCGGCGGAGCGAGCGGAAGCGGCGCGACGAGAG
GAGGCGGATACATGCCGACGGGAAATGGAGAGCGCTCTTGCAGAGGTATT
CATTGTCAAGCGCGATTGCCCTCTATGCGTTGAGAGAAAGTGTTTGAACC
GGACCGGGGGGTTCCTGAGATATATATTTTTCGCTTGCTGCTGTTGTTGA
TGATTCTGGTCTCTGCCCGTACCGCCCCTGTCGATGTAATACGAATGATA
AATGTGGAAGAGTTGCGATCGCGATTATTTTTGTGGTGCTTCCGAGTGTC
GTTTCGCGAAACGACGGAGGTTCGAACAACGCCCTCGAAAAGACTGCTGT
TAGATAGGGCACCAGGTTCTGACAGGGGGGGAGGTTGGTTCCCTCTGCTT
TTTTGTACATGGTATTATTACGTGCCTGAAGCTCCTCCAGGACGCGACGG
TACCTCGTATTCGTTTCCGACTGAATCTCCTGCCAAGAGCTGAACACCAA
CTCCGTCCACCACCCCCACTCGCCCTTCTCTATGTGTGTATGTGTGTGTG
TGTTGGTGCTCTCCAAAGGAAAAGGAACGCCTGCGGAACCAGATGGAAGC
GCGACTAAACGCCATGCGCGCCGGCCTGAAACGACGGCTTCAGGAGGCGA
GAGCCCAGCGAGCTGTCCGGGGCAGCGACGGCGATGAACGCGGTACTGAC
ACGGACTGACTGGACCAGTGAGGAGGCTTCAGCGGTGCAATAGTCGACAA
AGGATAAGCACGCTTGTCAAATGTTTTATGGCACAAGGTACCTTTTTCGG
CGCTGGGACAAACACGCACTGTGGCGTCTGGGCGGGGCAATGGACTGGGG
GTGGTTGGAAAATTGACAATTTTACCTATTTTCACGAAGGAGGCTTGAGC
TCTGGAAATAGATCGCTCGCCACGACGGTTCCAAGACATCCTTCGCACAT
ACTTAGCCGCGGTGTTTGGTGACTTATGTGTGATTTATCTATGGTCTCTT
CTCGATGTGATGTTACAATGGGCGTGCTTGCTCCTCAGTAGGCTTGAGTA
ATAGAAATCGATAGCGTTTGTATGTGTGTGTGTGTCAAGAGGTCGCATGA
CACCGTTTTATACTATATATTAGATCAAATCAAGGTAGCTCCGCTTGTAG
ACCTAGACCGGTAGCCTCAGCACTTGTTTGTCTCTTATCCCTGGGCGAAA
ATTTCGCACCACCCTTCATAGACGAGTATAATTTACCTGCGGATTTCCTG
TGGAGCCTTAGTACTTGTGTTTTTTTTGTTTTTGGGGGGCGACCAGGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig874:43137..47735+

>mRNA_A-nodosum_M_contig874.9.1 ID=mRNA_A-nodosum_M_contig874.9.1|Name=mRNA_A-nodosum_M_contig874.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=735bp|location=Sequence derived from alignment at A-nodosum_M_contig874:43137..47735+ (Ascophyllum nodosum dioecious)
ATGGTGGAGTCCGTCAGAGAAGAGACCGCGAAGGCCTTCAAAGAGGCGCA
AGAGCGGGATAAGGCGGCAGCGGAAGCGGCCGCGCATGAAGTGCATCAGC
TGAGAGCCGACCTCGAGGCGACGCGGACCTTGATGGAGACGGCTCTGCGA
GAAAAGGAAACGGTTCTCCAGGAAAAAGAGGCGATTCTCCAAGAAAAGGA
AACGATCTTGAGAGAAAAAGAGGCGGCTGAGGAGGAGAAGGTCGTGGCGG
ATGCACTCCTTAGGAAGGAAGAAGGGAGAGGAGGAAGGAATTTTCTTTGG
CGGAACGCTTTCGGATTGCGGGGGGGTGGACGTCGCCACTGTGATGAGGC
CTCTCATGATGGGAAAACCCTAAGCATCTTTAGAAAAGGAGATAGAGCAT
TTAGAGAAGGAGATAGAGCAGCTGCGGGAGACAAGCGCGTTACAAACCCA
GCGCCTCGAGGAAGCTGTCGCGAAGGCCGAGCGAGCGAGCGAAGACGCGG
TGGCGGCGGCGGAGCGAGCGAGCGAAGATGCGGTGGCGGCGGCGGAGCGA
GCGGAAGCGGCGCGACGAGAGGAGGCGGATACATGCCGACGGGAAATGGA
GAGCGCTCTTGCAGAGGAAAAGGAACGCCTGCGGAACCAGATGGAAGCGC
GACTAAACGCCATGCGCGCCGGCCTGAAACGACGGCTTCAGGAGGCGAGA
GCCCAGCGAGCTGTCCGGGGCAGCGACGGCGATGA
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