mRNA_A-nodosum_M_contig873.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig873.6.1
Unique NamemRNA_A-nodosum_M_contig873.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig873.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig873contigA-nodosum_M_contig873:193656..201326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size469
Hectar predicted targeting categoryother localisation
Exons6
Cds size465
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig873.6.1prot_A-nodosum_M_contig873.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig873 193658..201326 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870270.9425054-CDS-A-nodosum_M_contig873:193657..1937011680870270.9425054-CDS-A-nodosum_M_contig873:193657..193701Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig873 193658..193701 -
1680870270.9604378-CDS-A-nodosum_M_contig873:194145..1942261680870270.9604378-CDS-A-nodosum_M_contig873:194145..194226Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig873 194146..194226 -
1680870270.9739397-CDS-A-nodosum_M_contig873:199662..1997431680870270.9739397-CDS-A-nodosum_M_contig873:199662..199743Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig873 199663..199743 -
1680870270.9848962-CDS-A-nodosum_M_contig873:200110..2001941680870270.9848962-CDS-A-nodosum_M_contig873:200110..200194Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig873 200111..200194 -
1680870270.9964616-CDS-A-nodosum_M_contig873:200563..2006471680870270.9964616-CDS-A-nodosum_M_contig873:200563..200647Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig873 200564..200647 -
1680870271.0071785-CDS-A-nodosum_M_contig873:201235..2013261680870271.0071785-CDS-A-nodosum_M_contig873:201235..201326Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig873 201236..201326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig873.6.1

>prot_A-nodosum_M_contig873.6.1 ID=prot_A-nodosum_M_contig873.6.1|Name=mRNA_A-nodosum_M_contig873.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=155bp
AGAIALQSSELYVTDRGSVYFFTNHAGDDGGAIRIYDNSEGNVLGNVSFE
GNRADDSGGAIDLRSKSIIHLDGTMSFMGNEATKNGGAIYINIDSNASFG
GKTMFANNAAEFGGVVCVVRESNASFGGETMFANNTAEFGGAVYVFEGSN
ASFGG
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mRNA from alignment at A-nodosum_M_contig873:193656..201326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig873.6.1 ID=mRNA_A-nodosum_M_contig873.6.1|Name=mRNA_A-nodosum_M_contig873.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7671bp|location=Sequence derived from alignment at A-nodosum_M_contig873:193656..201326- (Ascophyllum nodosum dioecious)
GCAGGCGCGATAGCCTTGCAATCAAGCGAGCTCTACGTCACGGATAGAGG
AAGCGTATATTTTTTTACCAACCATGCTGGTGATGATGGAGGCAAGTACT
GACACCCAACCCATGTCCACGCTATAGCCTAATGGTCTCCTTCCCTCGAT
CCCTGTGTTGTATCTCGGTTTGTAAAGTCACTGTTTTGAGCCAACAAACC
CTTCCCTACACTTTATTTGGTTGGTTGCCATAAGTCTAAGGGGCCAAACC
AAAGTGTTTTCAACACCTACGGCACTGCGCCGTTCCTATCCTACGAGGCG
GAATCTGGAGGTGCGATGCGAGGGGAGAGCAAGAGTCCATTAGGTCCCTC
TATAGGTCCTTAAGATTTTCCATCTGCCATGCCCGAATCTACTGACCTAT
GGAATCGAGCAACGTGTGCGGATTTATTCCCACTCACGAATGTATACGAT
ACCGTTGCTCAAACTAAGCACAGGAAGTCCTTACAGATAGGTGTGTTCTG
GACATCGTCATTGTACCTCTCAAGCTTTCAAAGTTTTAGACTCATCATGT
ACTCTTGCGGGGCAGGATAACGCTCGCGAAAACGCGTTTTCTCTTATAAG
ACTCCGAGGACGATCACCATGAATGAGTTCCAACTTGGTATCGTATCTTC
CATTGAATCTCTTACTAATTGTAATATAGGTGCCATTCGTATTTATGACA
ACAGCGAGGGAAACGTTCTGGGCAATGTTTCGTTCGAGGGTAACCGCGCC
GATGATAGTGGAGGTGAGGGGAAATTTGAAGATGCACTTTCAGTAATACC
AACGTAAACCACGCGTCCAGAAACACGAGAGAGGCAAGGTAAGCTTTGCA
ACTGTCATTGGTACGTTACCTCAGGCCTTTTAGTTGACTCCACTTAAAGC
TGTCAGGAACGATTATTTCCTATAGTTGACGACTTCAAGTTTAAGGCTAA
CAAAATACCATGGCCTCTGGCCCCAGCCCTTACCCACGGAATCTGATAAT
GTTGCTATCTTCTTGGATTCTTATGATTGACTCTAAAGATAATACTTTGC
TTTCAAATAGTTGGGTGACTGCTCTACAACACTCAACCGAAATATTTCAC
TGACTAACGGTGAACAGTACCACATTTCACAGGCGCGATAGACTTGAGGT
CTAAGAGCATCATACACCTCGACGGGACTATGTCTTTTATGGGAAACGAG
GCAACCAAAAATGGAGGTATGAGTCGTTCAGCTCCTCCCTTGGGCCGCAG
GCCGTGTAGTATGTCTTTATGGAACCCCCCCGCGCCCGATAGATATCTCT
TGGCTGTGGAGGACTATTCCTTTTGTCTTGTTCTGCGATGAAGAGATATA
ACTCAAACACTTGCTTCTAGTCCAGACCAGAGCTATATCTCCGTACAAAT
AGAATTCTAATCGCAGCTCCGCCAGGACGTTCGGAAACAACACGATAATA
GAGACAAGCAACGCGATAGAGACAGGGCTAGTTTAGCAAAAGCCCGTGGC
ATGTATTCCATCGAGGTATTTTCACATGAACGCCTTTGATTCCATGCACG
CATTTCATTGTATGCACGCTTCTTGTATTACAGGTGCTATCTACATCAAT
ATCGACAGCAATGCTTCATTCGGAGGGAAGACAATGTTCGCTAACAACGC
TGCAGAATTTGGAGGTACGACGGTAACATGTACCAGGTACACAGTTTTAT
GAATCTCAAGTGACAAGAACAAAACTTTTCCGTAAGAGGATATTCTGGTA
GTAGAGCAGTATTACCGGGATTATGGTGACACACGAATGTCGTTGTCAGG
CGATGCAACGGAGCCGCAGTCGCATGGCATCTACCGTACAGCTAACACAC
ATCTGCAGCAAAGGTTGTAGCTGGAGGGACGTGGATTTTGTGTGGAGGAA
TGCAGTCTATCAATAATAAAGTCGCCGTTCGGTAGATATCAAACACAGCA
GCGTTGACGAAGTTACTGCTGGACATCGAGGTACATGTGACAACCGCAGC
GCTGTCGCCGCCTCTGCCGGCTCGCGGACTAGGGTCCAGCAGACCCTCGA
CGCTTCCTACCATCAGCCATGGCCTTGGAGTGGCCTTGGAGTTACTCTGG
TCAATCTACCGTTGAGTTTTGGAGTGATGCGCTCAAGACGGGACGCGTGA
CCGGTGTCCTTGTACAGTGCCCGAAGTTATGCCAGTACATTTCACTAATT
GCTGAAAATAAATACCCGTCCTTTTCTGGGCGTGATTCATTTTCAGCAAT
TCGTGGAAGAAAAACATCCAGACAACACACAGTTTCAACATTTATTGAAA
AATTCAGGGTACACCGCGGTAAGGGTTCTAAAGACGGTAACGAAACGGGA
CGGTAATGCAATGCTGCGGTAATTTTCAAACGGTAAACAGTATAAATATG
TTGCCGGTAACGCTTTCTGGCGGTAAGCGGTAAAGTCATATTGCACAGTA
GTTTTATAGCAATGGCAAAAAACAGGCGGAAACTTTTCCTGCGGTAAACG
GTAAAAAACAAAAGTCGAATATTATGGCGGTAAACGGCAATATTTTGTTT
CGGCGGTAAATGTAATTGACGGTAAACTGTAAAATATTTTTCGGCGGTTA
TTGGCGGTAAACGGTAAAACCATAAATTGACGGTAACGCATAGAAAAAAT
CACCTTCGCCGTAAAATAGGCACTACGCTCCGGTGTCCAACAAATGTTGA
TCGTTATTCGTTATTCGGTTATGTTATCTGCTAAACCATTCACGCGCATA
AATATTCTCCTTCTAAGCACACCAGCACGAGAGTATCACCACATCATTCC
CGCTCCTCGTCTCTGCACACATATGCTTGTTCGGTAAAAAACCACAAAAC
AATTTGAAGAAAAATAAAATAAATATATATATATATAAACGTAAACGCCA
TTGAGTGATTGATCGATTGAATTCTCATATAAGCTGATGTCAAAAATCCA
GCCCGTGGTCACAAGGTATAAAACCACCATTCAGAAGGAAAGAACGTACT
ACGTACTCTCCATACAAAGAGATAGCCGCAATTGTATAAAAAATGCTCGG
AAAAAGCGACATCTCCAAATAAATGAAAGGAAAAAAGGAAAGAAACAAGT
GTGGCTATCGGGGCGCCTGCATATCGCAGGACGATTAAACGAAGGGCCAC
GGTTTTCACGAAAGCATAAAGACGAAAACGAAGCAAAGCAAAACAAACGT
AACACCAGAGAAAAACGTCATGGCATCTGCAAACCAAACGCCTGGAGGAT
ACAAGTTCGCGCCTCTTGTGGCTAGTCAACAAGGGCGAGCGAACCAGCAC
GAGCCCACTTGCTTTGGGCTATCCTCTCCTTGGTGGTTCCCGTCACATTC
GGGCATACCACTTCATGCCGTAGTCCAGCCCTGGCTTTCTCTGCAGCGAT
CTAATTCGCTATGAATTGTCCCGCCCCTTGTCCTGCCGTTCTGCGGAATT
CCCCCTCGTCCTGGGCTGCAATCGTCCACTGGTCGGCGTTGATGCCAAAA
ACTCTGAGGTCGTCCAGGAAACACCCCATCCACTCGTTTTCCTGCCCCTC
TACACAGCCCGCGCCCCCCGCCAATGCTCCTAACATCACGCAATTAGGCA
GCCTCGTATCCTCAAAGCGCGCCACAAATCCCGCAAACAAGATCCACCTC
CTGCATAACGTCGCCTCGATGCTCTCACTTCCCGTCTTGAAAAGTGTGTC
CAGATAGGAAATCGGGCGGTCGGCGCGATTGTGCTTTCGCCAACCGATGC
AGCGAGTCAAGAACCTGTGGTGAACTCGGCGCAGCGTGTCTTAGTGGCAC
GCGCGCGTACTTCACGTGACGCAGCCCTACAGCATTGTCTCGAGTACCTC
GGCTCTTAGCAACCGGAGTTTGAGATCGAGGGAAGCGCTCGGTCGGTCGA
ACAGTTCGAGGGTGTACTTCCGGAAGCTGCACCATCATGCGTTGCGTATG
CGCCGGTCGACCTCGATGCACAGGTCGGCATTATTGTGCTTGACGTTTCC
CCCGAGGTATACAAACTCGTTCTTCTGGTTGTACACCTGGACCGCTGCCT
CTACGCTGAATGTGGCGGTGGACTCCGGCATCCCCTTCGCGCGTAAGCAC
ATGACCTCAGACTTGGCCTCCGATACGGTGAGGCCAAACGCCGCACACAC
AACCACGATCACCCCCATCATCTTCCTCAGCTGCTCGGGTAAATGCGAGA
CGACCCCGACATCGTCAGCATAAAGCATGCCCCAAAGCGGCGTCGCGAGG
ACTGACTCTCCGGCAGTTGCTTCCCCCCGCCCCCCCGCCACGCCGCCCCC
CTTTTCTTCATCAGGTGTACCAAAGCATCCATGATGTCTTTGTCCTCCTT
GAAACGCGTTGAGGCCACGTTTATACCCGACGTGAAGGAGATGCTGAACA
GAAGGGGCGCGAACATGCACCCTTGAACGCCTTGCTCCACAGCAAACCAC
CTCTAGCACACCCCGGCGTCGAGCCGCACTCATGCTCGCATGCCATCGTG
GAATTGACGAATGACCGAGATCATATTCTGTGGCACGCCAAAACGGGCGA
GTACTGTCCAGAGGAGGGGTTGATCAACGGAGTCGTACGCTTTTCAAAGG
CACCACCAGTGACAAATCTACCCCTCGCCATCTAGTCACACCCTCGTCAT
CCAGACAAGGAGAGGTGAAAAATAAAACGTAACAACTAAATAATAAAGTT
CTCGAGAGACTGGAGCAGCAGCAGCGCTTGAGCTGGGAGTCTCTACAGCG
CTCGATTTTTGATGCCCTCAATTCTGTGGTACGCTCTGGTTACCACGTTA
CCGCAGGTCGGTGTGTGTGGTGCGGTGTGATGCCACATGGGGTTTCGTGA
GGTACCCCCATCCTCGTTCAAAGAAAAAAAATAGAGAGAAAAAATATTTA
CAATCCTTATAGAGAAACTCGAACCTGAGTTTTTTTTAGCAGATGGAGCC
GGTCTGCCTCTGACCTACGAGACAAACGTAGATAGCACAGCGGTAGCGAG
CTTTAAATACAGTATATGTTTTGGACGATAGCGCAGACCAGCGGCAAATT
TTGTAGGCAGTAACCCAGACTAGCGGTAATTCCTGCATACGGTTCCTTTT
TTTTTGCTATTTTTGAGTTAGCCGGTAATTTTCAAACCACCAAATTAATG
TTTCGCAAGAATTATCGCGGTAATTTATCGCGGTAAAATTACCGGGGTTA
ACGCTGGAAAAATTGCGCCTAAATAAGACCGGCTCTTAATAAAATGCATT
GCTTCTTCGTTAGATTTGAAAGGTTTCGCCCAGAACTGGATATCTTTAAA
TAAAGTCAACTCTATTAAACCATCTTGTCTGGCGAGCTGTGGTATATCTA
TAGCTTTTAGTGGAATTCAGTGGTACCAGCAACATCGACGCTTGAAATCT
CTGAGCGAAGAAATAATTTGGGGAAATTGGGCCCATCTGTTGTCGGGGTT
TCACGATGCGGAAGCCCGTGATTTCTGATGATGTTTTCCTCAAGAAGCGG
CTCCGGGACCGCAAAGGGTATATGTACGTAGCTTAGTACGAAACGACGCT
TGCTTGAAAGACCCTGGGCAATGTCTTTACACCAAGTAGTATTACAGCAG
TTAGTTGCGGGGCCTCAGACCAACAACGTTGCCCAAGGCGTGCATAATTT
TCGGACTGTGGTCTGTAACAATTATTATATCTATGTAGTCGTTGCCATTT
TTTCCCATTTTGTACAGACGACTACCTATTGTTTATTCTTGTGGGGGATT
CGAGCAATCCGACGATAGGGGGGGGGAGGGGATAGGAGAAAAATATTCCC
TATTACATGGGGAATATGGCCAAAAAGGCCCCTTCAGGGTGTGGGATAGA
TTATCCTGTTAGCGGATGGACAAGCTTGCCCCAGACTAAACTCATTCTAG
CAGGAGTTTGTTAAAATACTTCCTCGGGAGGGGCTCTTTTGATGACACCT
CCAGAAAAGGGGACATATTACGCCCATCCCCTCCCCCCCCTATCGTTGGA
TTGCTCGTTCTTATTTATTTTAGGGTGGGTGATTTTCCTCTATTTTTCAA
GAAGAGCAAGCGTACAGATATCATCATGATAAAATTCGCTCCAGTGTTCT
GTGGTCTGTGAGTTTTCCACCGCAATGGTCTCTTATTGTCACCATTCATC
GTGTACTTGACGACGTAGCTGCTACTCAAACCAGCTCCGCGTGCGTTCGT
ATCGCCACTCGTGGGAGGGAGGAGATTGATTGATTGATTGATTCAAATCT
CAAATAAGTAAGGGCAACTTTATAATCGGCAATGTTTTGTTCGAGGGTAA
TCACGCCGATGATAGCGGAGGGAGGGGAAAATTTGAAGGTGCTCTTCCAG
CAATATCGACGTGAACCACGGTGTCCAGAAACACGAGAGAGGCTAGTTTA
GCTTTGCAATAATCCGTGGTACAATATCACAGGCCTTTTGATTTACTCCA
CTTAAAGGTGCCAGGCATCATTATTTCCTTTAGTTGACGACCTCAAGTTT
AAGGTTAACAAAATACCATGGCCTCTGGACACAGTCCTTACCCACGGGAT
CTGAAAATGCTACTATCTTCTTGGATTGTTATGATTGACTGCTCTCCGAC
ACTCAACCGAAATATTCCACTGATTGACGGTGAATAGTACCAAATTTCAC
AAGCGCGATATACTTGAGGTCTAGGAGCATCATACACGTGTCGACGGGAT
GACGTCTTTTGTTGAAAACGAGGCAACCAACACTGGAGGTATGAGCCCTT
CTGCTCCCCCCATGGGCCACAGGACGTGTATGTCTCCCCCCCCGCGCCCT
ATATATATATCTCTTGGCTGTGGAGGACTATCCCTTTTGCCATTCTGCAA
TGAAGAGATATAAACAAAAATACTTGCTTTTGGTCCAGACCAGAGATATA
TCTCCGTACAAATAAACTCTAAACGCTGCTCCGCCGGGACGTTCGGAAAC
AAGACGATAATAGAATAGAGAGAAGCAACACGATAGAGACTAGAATAGTT
TTGCAAAAGCTCGTGGCATGTATTACATCGAGGTATTTTTACATGCACGT
CCTTGATTGCATGCACGCCTTTGATTGTATGCACGCTTCTTGTATTACAG
GTGTTGTCTGCGTTGTTAGAGAGAGCAATGCTTCATTCGGAGGGGAGACA
ATGTTCGCTAACAACACTGCAGAATTTGGAGGTACGGGGGTAACATGTAC
TACACGATTTTATGAATTTCAGTGAAAACGAACAAAATGTTTCGTGCAAG
AGGATGTTATGGTAACCTTGAAAGCAACAACGAGCCGTTCAGTTCCCCCC
CAGGGCCGCAGGACGTGGTGCATGTCTCCCCCCCGCGCCCGATAAATACA
TGTCTTGGCTGTGGAGGATTATCTCTTTTGTCTTGTTCTGCGATGAAGAT
ATATAATAAAAAAGGCTTGCTTTTAGTTCAGACCAGGGCTATATCTCCGT
AAAAAGCAACCGTCATTACCGCATTTCCCCCAGGAAGTTCAGAAACAACG
CGATAGAGACAAGCAACACGATAAAGAGGAAGCTAGTTTCGCGATACCCC
ATGGCATGTACTTTTATATACACGCCTTTGATTACATGTACGCCTTTAAT
TGTATGCACGCTTCTTGTACTACAGGTGCTGTCTACGTATTTGAAGGCAG
CAATGCTTCGTTCGGAGGAGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig873:193656..201326-

>mRNA_A-nodosum_M_contig873.6.1 ID=mRNA_A-nodosum_M_contig873.6.1|Name=mRNA_A-nodosum_M_contig873.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=465bp|location=Sequence derived from alignment at A-nodosum_M_contig873:193656..201326- (Ascophyllum nodosum dioecious)
GCAGGCGCGATAGCCTTGCAATCAAGCGAGCTCTACGTCACGGATAGAGG
AAGCGTATATTTTTTTACCAACCATGCTGGTGATGATGGAGGTGCCATTC
GTATTTATGACAACAGCGAGGGAAACGTTCTGGGCAATGTTTCGTTCGAG
GGTAACCGCGCCGATGATAGTGGAGGCGCGATAGACTTGAGGTCTAAGAG
CATCATACACCTCGACGGGACTATGTCTTTTATGGGAAACGAGGCAACCA
AAAATGGAGGTGCTATCTACATCAATATCGACAGCAATGCTTCATTCGGA
GGGAAGACAATGTTCGCTAACAACGCTGCAGAATTTGGAGGTGTTGTCTG
CGTTGTTAGAGAGAGCAATGCTTCATTCGGAGGGGAGACAATGTTCGCTA
ACAACACTGCAGAATTTGGAGGTGCTGTCTACGTATTTGAAGGCAGCAAT
GCTTCGTTCGGAGGA
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