mRNA_A-nodosum_M_contig8729.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8729.2.1
Unique NamemRNA_A-nodosum_M_contig8729.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8729.2.1 vs. uniprot
Match: D7FH82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH82_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 7.240e-15
Identity = 71/250 (28.40%), Postives = 108/250 (43.20%), Query Frame = 1 
Query:  103 GSSICTLWSAIALGALFAGRPTESVASYVRLARNALRSSKGSSVTETVRAWCLLGHADELTGDTEGFTQCLHSTETFVQEKIRRGQEGDIPSWLNDSITFFKARTNLVSEDSKEILELFCSKDIAPPPEISSASSDIEIYVFITRTKIKMYQAMCGCYGGDRRAFSKSENHSDESLEDLHGAEQPKAQGLQARHGTIGERLDIAAVERLKGALSITG----PLELLMQRPNIRGGVIEGVIQSTLAIAKA 840
            GSS CT W A+ALGAL  G P  SVA Y  LAR+A+ S  G   T   +AW +L       GDT+ F + +  +E F       G    +P    + ++            S   +E FC +    PP++ +A+S+ E+Y F+ +   +  QA+       R A+ +S         D  G       G++     + E   +A V+ +   +S        LE +  RP IR G+   +I  TL   KA
Sbjct:   72 GSSTCTFWCAVALGALVKGGPVTSVARYSELARDAVESYSGPVTTGVAKAWVILAFLYLFHGDTDMFQEYMARSEAFFSASGAYGSTEVLPVGYAEVVSHRMTVRMFSGNASTSEVESFCRQP-QDPPQLKAAASETELYAFMMQAYREFEQAVY------RTAYLESS--------DAGGLPSENEAGIRTCSSRVREA-SMAVVDTMASRISNHSCDFERLEDVADRPLIRQGIGGLIINGTLVFEKA 305
[Close]
BLAST of mRNA_A-nodosum_M_contig8729.2.1 vs. uniprot
Match: A0A6H5JMP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.190e-8
Identity = 70/240 (29.17%), Postives = 102/240 (42.50%), Query Frame = 1 
Query:   58 SPLKMS-GGDEVWGAKGS------SICTLWSAIALGALFAGRPTESVASYVRLARNAL-RSSKGSSVTETVRAWCLLGHADELTGDTEGFTQCLHSTETFVQEKIRRGQEGDIPSWLNDSITFFKARTNLVSEDSKEILELFCSKDIAPPPEISSASSDIEIYVFITRTKIKM----YQAMCGCYGGDRRAFSKSENHS-----DESLEDLHGAEQPKA------QGLQARHGTIGERLD 708
            SP +++ GGD V  + G+      S CTLW A+ALGAL  GRP ESV SY +LA+ AL +SS G    E  + W +L +     GD +GF +                            I  FK   N VS    +   L    +  PPP++   +++ E+Y +++++ + +    Y  M             SE H        SLEDL  A+  KA       G     GT+ E +D
Sbjct:  110 SPSRVAPGGDLVKTSAGNQFPMDPSACTLWCAVALGALIKGRPIESVTSYAQLAKGALAKSSSGPGGAEVAKVWVILANLHGFMGD-KGFAE----------------------------IVKFKDIAN-VSCGKWQAEYLPVQGEFLPPPQLIEVATEAELYRYVSQSCVALAEAIYTTMIEQSASGGNGLYDSEPHGRAGGVHRSLEDLMAADFSKALTSLLDDGDVIDFGTLQEAVD 319
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8729.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH82_ECTSI7.240e-1528.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMP5_9PHAE1.190e-829.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8729contigA-nodosum_M_contig8729:3910..8126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size842
Hectar predicted targeting categoryother localisation
Exons8
Cds size840
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8729.2.1prot_A-nodosum_M_contig8729.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8729 3912..8126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870270.6272373-CDS-A-nodosum_M_contig8729:3911..39331680870270.6272373-CDS-A-nodosum_M_contig8729:3911..3933Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8729 3912..3933 -
1680870270.6399393-CDS-A-nodosum_M_contig8729:4360..44021680870270.6399393-CDS-A-nodosum_M_contig8729:4360..4402Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8729 4361..4402 -
1680870270.7100189-CDS-A-nodosum_M_contig8729:4766..50531680870270.7100189-CDS-A-nodosum_M_contig8729:4766..5053Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8729 4767..5053 -
1680870270.789524-CDS-A-nodosum_M_contig8729:5662..57731680870270.789524-CDS-A-nodosum_M_contig8729:5662..5773Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8729 5663..5773 -
1680870270.8001535-CDS-A-nodosum_M_contig8729:6114..61981680870270.8001535-CDS-A-nodosum_M_contig8729:6114..6198Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8729 6115..6198 -
1680870270.811048-CDS-A-nodosum_M_contig8729:6729..67751680870270.811048-CDS-A-nodosum_M_contig8729:6729..6775Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8729 6730..6775 -
1680870270.8227177-CDS-A-nodosum_M_contig8729:7507..75811680870270.8227177-CDS-A-nodosum_M_contig8729:7507..7581Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8729 7508..7581 -
1680870270.8395903-CDS-A-nodosum_M_contig8729:7952..81261680870270.8395903-CDS-A-nodosum_M_contig8729:7952..8126Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8729 7953..8126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8729.2.1

>prot_A-nodosum_M_contig8729.2.1 ID=prot_A-nodosum_M_contig8729.2.1|Name=mRNA_A-nodosum_M_contig8729.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=280bp
SQKYGEKAEKNTHILPGVTSPLKMSGGDEVWGAKGSSICTLWSAIALGAL
FAGRPTESVASYVRLARNALRSSKGSSVTETVRAWCLLGHADELTGDTEG
FTQCLHSTETFVQEKIRRGQEGDIPSWLNDSITFFKARTNLVSEDSKEIL
ELFCSKDIAPPPEISSASSDIEIYVFITRTKIKMYQAMCGCYGGDRRAFS
KSENHSDESLEDLHGAEQPKAQGLQARHGTIGERLDIAAVERLKGALSIT
GPLELLMQRPNIRGGVIEGVIQSTLAIAKA
back to top

mRNA from alignment at A-nodosum_M_contig8729:3910..8126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8729.2.1 ID=mRNA_A-nodosum_M_contig8729.2.1|Name=mRNA_A-nodosum_M_contig8729.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4217bp|location=Sequence derived from alignment at A-nodosum_M_contig8729:3910..8126- (Ascophyllum nodosum dioecious)
TCCCAGAAATACGGCGAGAAAGCTGAGAAAAATACCCATATCTTGCCGGG
TGTAACATCCCCGCTCAAGATGTCGGGGGGTGATGAGGTCTGGGGTGCAA
AAGGTTCTTCCATCTGTACGCTCTGGAGTGCGATTGCCCTTGGCGCCCTC
TTCGCAGGTCGACCTACCGAGTCGGTTAGTAGTGTGCATGCCTTCGTGCG
GGTGCGTTGTGGTATGACCGTGTGTGCGCATCATTAATTCGCGTTTATAT
GTACGTGTCTGATGCATGCGTATATGTATACGAGCGACTACGGGAGGGCC
CTTCGGTCCATCATCGTTGGTGGCATTTCCTGAAGCTCTTTATTGTATTC
AATATTTTGTGGTAGGAGCCTTTTTACGCTAAAGCTGTAGAAATGCTGTA
CGCTAAACATGAACAGATGGAATGAGAAACAATTATACAAAGATGGATGG
CTTGACCGCGGCATCGTGAGACAAGACTCTTATTCTACTTTCCATACAAA
ACTTCTTGTTCCGGGGTCTTGTGCACATCAAACGATCAACGGTAGGTAGC
GAGCTACGTGCGCTTGGCCAGGAACGCTCTGCGAAGCTCCAAAGGCTCCT
CAGTGACCGAGACTGTAAGGTCAGCAGTCATCAATTTCGATACGTATTTG
CACCAAATCCGCCCTACTATTGGTTTCCCCGTAGCGGGTCTGTGAAGTTC
GCTGCGTTGGTTATAGACGTGAGGTTTATTTGCGCGTTGCAACGCACGTG
GCGGTGTGTGTATCACTCTCTTTGAAGGGTGCACCACTCAACTTCCTACT
CTCCTTATAACGAACTATAGACAGGAAGAATAATCATAAACCCGTGGAAT
TGAACAAATCGATGTCTCCATATTTTTTTTCAGTGTAATAATATGTAGAA
TAGTTAATTAAATTGATATTATTAATATCTTTGGCGCAAAAACATAAGAA
GAGCATGGGTAGTGTTTCCGACGCCAGGGCGCTGCGCCAAAAGGCTGTTA
CATGAGTTTTGCGCGTACGACGAGACTGCTGATGATGTGACTTCGTGGAA
TTCCGAAAGACTACAATAGGGCCCCTCCGACCGCGACCGTCACGCGATCT
GGCAGGCTCTCTGCTATACAACACTACTAGCCAGAACAGCCATGTTGTTT
GTTGTCTGGGGTTCTTGTAGAGAATATATCTACATTCAGTAACGGCTTTG
AACAAAACATTGCAAGGTAGCTGACAGAAGTGTTTGATGAATACAGAATG
CCAAGAGATATCCTAGACTCGCAGAATATCCCCGCTCTCATTTTAACACC
AATGCAAGCGTAAAGTGGGCCATGTCTGATGTGTATGTCCTCGCACCCCA
GGGCGTGGTGCCTACTGGGGCATGCCGATGAATTAACTGGAGATACGGTG
AGGACCAGTATATAGAGAGTTAAATGAGTCGCTGATTGTATCACGTTTTG
GCCGGCGAAATATATGCTTCGATATTGATGTAGTTCCAAACAGGCCTTCA
AATGATAGCGAAAATATATGGAGAAGGGTCGGATACGGAAGCCTAATAGT
CGGGTCCGTTGCGTGTTATCAAGGGGTATCGGGACTGGCTTGGTGAGATC
GGCGGATTTCCAACCTTCGGTTACCATGGTCTGATTGCCTTCATCTATCT
GGCTGAGCACCGGGTTTGCCCCACTCGACGGGTAATGGAGATATAAATTT
ACCGCCCATCGTGATTCCTCGGTCGTTGTTGCTTCTTCAAAACTTGATAT
TAACACCTACTTTAAAACCTCCTGGTTATGCTGAGATGAGCAATATTCCT
TCGTCGGTTTTTGTATTTGGGATACCTGTAAAACGGGTGATTGCAATCGT
TACCTTCAACTGTTTCGGATGTTTGCTACCGCTCTCCGCTTGACTGACTG
ATCGACGATTTCATTTGTGAAACTCTAGGAAGGATTTACGCAGTGCCTGC
ACAGCACGGAAACGTTCGTTCAAGAGAAAATACGGCGCGGGCAGGAGGGA
GACATACCCTCGGTGAGTACAGCTTCGTGGCGAGGAAAATTTGCCAAATC
GGCATGAAATATATGAAACTTTTCTATACTTCTATCGGTGGTGTTATACT
CCACGCGTATCATATAGTAAGTATCGATACAAAACATATACGAAGTATAT
TTGTCGTAACACAAATATAGAGAGCACTGTATTGCAATCTGTGGTGGCAA
ATTTTAATCTTTAATCCTCGGAGTACGAAGACAGCGAGATTCTTGCCCCG
CTATCTCAGGCTGGGCACCAACTCGCTATCAGTTCTCCAAACCTCCGAGC
AAAAGAAACGTTTGTGGTTCAGGCTTTGTCTAACACCGATTACCTTCGTC
CAGTGGCTGAACGACAGCATAACGTTTTTCAAGGCAAGGACAAACCTCGT
CAGCGAAGATTCCAAGGAGATTCTGGAGCTATTTTGCAGCAAAGATATTG
CTCCTCCTCCAGAGGTGGGTCTTGGTGACACCCGGTTGAGCTCGCCTGTC
CGAACAAACCATTTTCCAATCATCTGTAGACTTCCGTTCCCCTTTGAGCT
CTTGGATTTTCAACGCAGGGTTTGAACTAGCCACGATCGATTGAATGATG
CAATGTAGCCGTCTCGATTCGAACAAAATTGAAGTGGCACTCCATGAAAA
ATTCTGTGTAGATAGCTAAAAGATCCGGTGATGGATTTGATAACGTCTTT
TTGGCAACAAACAAAGCAAGGCGTCATTCGGGCAATTTCTGTCGGACACC
TGTTTTCGAGCGGTTACGCGCGTTTGCCCTCAGCCCACTCTTTTTTTAAA
GGTATGGAGCCAATAATTGTAGTAAATCTCGGCTTGGTTTCCGTTGCCAT
GATGGAGCCCACCCGGGTGACAGATGTGATGCAGCACAGACAATTTGTGG
GGGAGCTAGACTTCCGCGCATCAATTCCATCGTTTGCTATTTTGATAGTC
TATGATGCCACTTCACTCCATGTTTATCTCTCTTACCCTCTTTTCCGATC
CTAGATGCCCTCAACATTGACCGACCTACTTGTCGCCTTAATCGTCCTCC
CTTTTTCTCTGAGCGGTCAGCAGATTTCTAGCGCCTCATCGGATATCGAG
ATCTACGTCTTTATAACCCGCACTAAAATTAAAATGTATCAAGCTATGTG
TGGATGTTACGGAGGTGATCGGCGTGCCTTCTCCAAATCAGAAAACCATT
CCGACGAGAGCCTTGAGGATTTACATGGCGCCGAGCAGCCAAAGGCACAG
GGCCTTCAGGCTCGGCACGGTACGATCGGCGAAAGGCTCGACATTGCGGC
GGTGGAGAGGCTCAAAGGCGCTTTGTCAATCACCGGACCACTGGAGCTAC
TGATGCAACGGTGCGGCCGTATTGATTCTCGGCCTTCGGCAGGTTGTGAG
GAGATGTGATTGATATTTACCACGTATTCGGAAGATAGCCCAGTCACCGT
TGACTTGATTTTTTTCTGACGCGTACGGCCAGTGTTAGAATGCATCTTAA
CTACATATAAAACTGACACACGCGGTCGGAGGGACGTACGCACAAACACG
ATAAGGCGGGGGGAGGTTTGTAGGGATGGAGGAATGAAGCGTGGCAAGAA
CCATGATTTGTTGCGTTCGTCTGCTGAACCAACCAGTGGATAGGAAACAT
ATTGATACATAGTATGCCGTTATTGCCTGTAGATCTTGCGTTCGCGCTGT
TGTGCGGTTGTCGTTGACGAGCAGGCCAAACATCCGAGGGGGAGTCATCG
AGGGTGTCATTCAAAGGTGGGTGTAAGAAACTATTTCTCCGTGGGAAAGG
GGATAGGGGCGAGGGAAGAGGGTTGTGGTGTGAAAACGTCGCGGGATGTT
AGGGATGAAGGAACTCTTCCCGTGTAATTTCTTACTTGCTGCCATATCCA
ATATTATCGACGCCCTGTCTATGCTTGCAAGATGCAAGGTATCAGTTACG
ATCGCGGGGTGCATAGAAGAAATGTACCATTTTGGTTTTCTTTGCCCAAA
CACTGGCAGCCTTTCACTTCATTTGAGTGAAGCGTTTAGTTCGTAATACT
GACTACTGAGATGCAAATTGTCGATGTTTGCTACCAATATTTCCATGACA
ATGTCCGAACATATTTCCTCTCTTCTCTTTCATCTGCCGTCCTTGCGTGT
TTGTACTCAAACACTCGGCCATTCGTGATTGATTGCATGGTAGCACGCTT
GCCATAGCGAAAGCAAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig8729:3910..8126-

>mRNA_A-nodosum_M_contig8729.2.1 ID=mRNA_A-nodosum_M_contig8729.2.1|Name=mRNA_A-nodosum_M_contig8729.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at A-nodosum_M_contig8729:3910..8126- (Ascophyllum nodosum dioecious)
TCCCAGAAATACGGCGAGAAAGCTGAGAAAAATACCCATATCTTGCCGGG
TGTAACATCCCCGCTCAAGATGTCGGGGGGTGATGAGGTCTGGGGTGCAA
AAGGTTCTTCCATCTGTACGCTCTGGAGTGCGATTGCCCTTGGCGCCCTC
TTCGCAGGTCGACCTACCGAGTCGGTAGCGAGCTACGTGCGCTTGGCCAG
GAACGCTCTGCGAAGCTCCAAAGGCTCCTCAGTGACCGAGACTGTAAGGG
CGTGGTGCCTACTGGGGCATGCCGATGAATTAACTGGAGATACGGAAGGA
TTTACGCAGTGCCTGCACAGCACGGAAACGTTCGTTCAAGAGAAAATACG
GCGCGGGCAGGAGGGAGACATACCCTCGTGGCTGAACGACAGCATAACGT
TTTTCAAGGCAAGGACAAACCTCGTCAGCGAAGATTCCAAGGAGATTCTG
GAGCTATTTTGCAGCAAAGATATTGCTCCTCCTCCAGAGATTTCTAGCGC
CTCATCGGATATCGAGATCTACGTCTTTATAACCCGCACTAAAATTAAAA
TGTATCAAGCTATGTGTGGATGTTACGGAGGTGATCGGCGTGCCTTCTCC
AAATCAGAAAACCATTCCGACGAGAGCCTTGAGGATTTACATGGCGCCGA
GCAGCCAAAGGCACAGGGCCTTCAGGCTCGGCACGGTACGATCGGCGAAA
GGCTCGACATTGCGGCGGTGGAGAGGCTCAAAGGCGCTTTGTCAATCACC
GGACCACTGGAGCTACTGATGCAACGGCCAAACATCCGAGGGGGAGTCAT
CGAGGGTGTCATTCAAAGCACGCTTGCCATAGCGAAAGCA
back to top