mRNA_A-nodosum_M_contig867.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig867.4.1
Unique NamemRNA_A-nodosum_M_contig867.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig867.4.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 9.040e-19
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:    4 RTDEGGEF-----EGEFQQVLDSHGITHEFTPPDTPQHNGVAERALGLLREKSIAMLQEVTVAASD-----RLWAEALNYACDMSNMCVASSLEGGTSPYEKWYGREPSL 303
            RTD GGEF     EG+F +V   HGI  EFTPP+TP++NGVAERALGL+ + ++A   + T    D     RLWAEA++ AC   N     S EG  S YE ++   P +
Sbjct:   89 RTDGGGEFQGQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPRLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDPPPPV 198
[Close]
BLAST of mRNA_A-nodosum_M_contig867.4.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.550e-18
Identity = 47/101 (46.53%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    4 RTDEGGEFEGEFQQVLDSHGITHEFTPPDTPQHNGVAERALGLLREKSIA-------MLQEVTVAASDRLWAEALNYACDMSNMCVASSLEGGTSPYEKWY 285
            RTD GGEF+G+F +V   +GI  EFTPP+TP++NGVAERALGLL + ++A       M  +  V  S  LWAEA++ AC   N    +   G  SPYE ++
Sbjct:   58 RTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPV--SPGLWAEAISCACHQMNCTATTGNPGHKSPYELFH 156
[Close]
BLAST of mRNA_A-nodosum_M_contig867.4.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.590e-18
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    1 IRTDEGGEFEGEFQQVLDSHGITHEFTPPDTPQHNGVAERALGLLREKSIAMLQEVTVAASDR-----LWAEALNYACDMSNMCVASSLEGGTSPYEKWY 285
            +RTD GGEF+G+F +V  +HGI  EFTPP TP++NGVAERALGL+ + ++A   + T    D      LWAEA++ A    N     S EG  S YE ++
Sbjct:   88 VRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCAWHQLNCTATKSNEGDKSAYEMFH 187
[Close]
BLAST of mRNA_A-nodosum_M_contig867.4.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 5.400e-18
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:    4 RTDEGGEFEGEFQQVLDSHGITHEFTPPDTPQHNGVAERALGLLREKSIA-------MLQEVTVAASDRLWAEALNYACDMSNMCVASSLEGGTSPYEKWYGREPSL 303
            RTD GGEF+G+F +V    GI  EFTPP+TP++NGVAERALGLL + ++A       M  +  V  S  LWAEA++ AC   N    +   G  SP E ++G  P +
Sbjct:  262 RTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPV--SPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPV 366
[Close]
BLAST of mRNA_A-nodosum_M_contig867.4.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 6.010e-18
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 IRTDEGGEF-EGEFQQVLDSHGITHEFTPPDTPQHNGVAERALGLLREKSIA-------MLQEVTVAASDRLWAEALNYACDMSNMCVASSLEGGTSPYEKWYG 288
            +R+D GGEF  GEF  V +   I  EFTP  +PQ+NGVAER LGL+ E ++A       +   V +  +D+LWAEA+++AC+  N    S+     SPYE WYG
Sbjct:  395 VRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYG 498
[Close]
BLAST of mRNA_A-nodosum_M_contig867.4.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.670e-18
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 IRTDEGGEF-EGEFQQVLDSHGITHEFTPPDTPQHNGVAERALGLLREKSIA-------MLQEVTVAASDRLWAEALNYACDMSNMCVASSLEGGTSPYEKWYG 288
            +R+D GGEF  GEF  V +   I  EFTP  +PQ+NGVAER LGL+ E ++A       +   V +  +D+LWAEA+++AC+  N    S+     SPYE WYG
Sbjct:  379 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG 482
[Close]
BLAST of mRNA_A-nodosum_M_contig867.4.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 8.040e-18
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 IRTDEGGEF-EGEFQQVLDSHGITHEFTPPDTPQHNGVAERALGLLREKSIA-------MLQEVTVAASDRLWAEALNYACDMSNMCVASSLEGGTSPYEKWYG 288
            +R+D GGEF  GEF  V +   I  EFTP  +PQ+NGVAER LGL+ E ++A       +   V +  +D+LWAEA+++AC+  N    S+     SPYE WYG
Sbjct:   45 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG 148
[Close]
BLAST of mRNA_A-nodosum_M_contig867.4.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 8.130e-18
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 IRTDEGGEF-EGEFQQVLDSHGITHEFTPPDTPQHNGVAERALGLLREKSIA-------MLQEVTVAASDRLWAEALNYACDMSNMCVASSLEGGTSPYEKWYG 288
            +R+D GGEF  GEF  V +   I  EFTP  +PQ+NGVAER LGL+ E ++A       +   V +  +D+LWAEA+++AC+  N    S+     SPYE WYG
Sbjct:  312 VRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG 415
[Close]
BLAST of mRNA_A-nodosum_M_contig867.4.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 8.140e-18
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 IRTDEGGEF-EGEFQQVLDSHGITHEFTPPDTPQHNGVAERALGLLREKSIA-------MLQEVTVAASDRLWAEALNYACDMSNMCVASSLEGGTSPYEKWYG 288
            +R+D GGEF  GEF  V +   I  EFTP  +PQ+NGVAER LGL+ E ++A       +   V +  +D+LWAEA+++AC+  N    S+     SPYE WYG
Sbjct:  791 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYG 894
[Close]
BLAST of mRNA_A-nodosum_M_contig867.4.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 8.160e-18
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 IRTDEGGEF-EGEFQQVLDSHGITHEFTPPDTPQHNGVAERALGLLREKSIA-------MLQEVTVAASDRLWAEALNYACDMSNMCVASSLEGGTSPYEKWYG 288
            +R+D GGEF  GEF  V +   I  EFTP  +PQ+NGVAER LGL+ E ++A       +   V +  +D+LWAEA+++AC+  N    S+     SPYE WYG
Sbjct:  498 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYG 601
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig867.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K293_9PHAE9.040e-1945.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKB4_9PHAE1.550e-1846.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2T3_9PHAE2.590e-1846.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE5.400e-1844.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JB16_9PHAE6.010e-1844.23Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE7.670e-1844.23Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KKK1_9PHAE8.040e-1844.23Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE8.130e-1844.23Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JBA7_9PHAE8.140e-1844.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE8.160e-1844.23Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig867contigA-nodosum_M_contig867:65848..66150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28532.XP_010520710.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size303
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.69e-16
EggNOG OGsCOG2801@1|root,KOG1334@1|root,KOG0017@2759|Eukaryota,KOG1334@2759|Eukaryota,37SNQ@33090|Viridiplantae,3GHRQ@35493|Streptophyta,3HVU8@3699|Brassicales
DescriptionGAG-pre-integrase domain
Cds size303
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870255.8849742-CDS-A-nodosum_M_contig867:65847..661501680870255.8849742-CDS-A-nodosum_M_contig867:65847..66150Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig867 65848..66150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig867.4.1prot_A-nodosum_M_contig867.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig867 65848..66150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig867.4.1

>prot_A-nodosum_M_contig867.4.1 ID=prot_A-nodosum_M_contig867.4.1|Name=mRNA_A-nodosum_M_contig867.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=101bp
IRTDEGGEFEGEFQQVLDSHGITHEFTPPDTPQHNGVAERALGLLREKSI
AMLQEVTVAASDRLWAEALNYACDMSNMCVASSLEGGTSPYEKWYGREPS
L
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mRNA from alignment at A-nodosum_M_contig867:65848..66150-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig867.4.1 ID=mRNA_A-nodosum_M_contig867.4.1|Name=mRNA_A-nodosum_M_contig867.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at A-nodosum_M_contig867:65848..66150- (Ascophyllum nodosum dioecious)
ATTCGAACTGACGAGGGAGGTGAGTTTGAGGGTGAGTTTCAGCAGGTGCT
TGACTCGCATGGCATCACTCACGAGTTCACACCTCCTGATACGCCACAAC
ATAATGGGGTGGCAGAGCGAGCTCTCGGACTATTACGAGAAAAGTCTATC
GCAATGCTGCAAGAGGTGACAGTGGCTGCAAGTGACAGACTTTGGGCTGA
GGCACTGAACTATGCCTGCGATATGTCCAACATGTGTGTCGCATCATCAC
TTGAGGGCGGCACATCGCCGTATGAGAAGTGGTATGGCAGAGAACCGTCT
CTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig867:65848..66150-

>mRNA_A-nodosum_M_contig867.4.1 ID=mRNA_A-nodosum_M_contig867.4.1|Name=mRNA_A-nodosum_M_contig867.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=303bp|location=Sequence derived from alignment at A-nodosum_M_contig867:65848..66150- (Ascophyllum nodosum dioecious)
ATTCGAACTGACGAGGGAGGTGAGTTTGAGGGTGAGTTTCAGCAGGTGCT
TGACTCGCATGGCATCACTCACGAGTTCACACCTCCTGATACGCCACAAC
ATAATGGGGTGGCAGAGCGAGCTCTCGGACTATTACGAGAAAAGTCTATC
GCAATGCTGCAAGAGGTGACAGTGGCTGCAAGTGACAGACTTTGGGCTGA
GGCACTGAACTATGCCTGCGATATGTCCAACATGTGTGTCGCATCATCAC
TTGAGGGCGGCACATCGCCGTATGAGAAGTGGTATGGCAGAGAACCGTCT
CTG
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