mRNA_A-nodosum_M_contig865.32.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig865.32.1
Unique NamemRNA_A-nodosum_M_contig865.32.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig865.32.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.570e-30
Identity = 60/142 (42.25%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    4 LLAMAAAKDGELRHFDTEQAYLKADIDEEIYIEIPEEFQGFPGAVGWLSKVIYGLVQAGRCWNNKFCDDMTAVGFEQAKADPCVFRKVVDGEVEMVVVVHVDDILAHTKDQATTDRFAAELGPKFKLKDIGDAGYYMGCHIT 429
            ++A+A  K  +L H+D +QAY+ A + EEIY+  PE      G V  + + +YGL Q+GR W  +  D +   G+EQ + DPCVFRKVVDGEV  ++V++VDDIL    D+   +   A L  KF +KD+G+  +Y GC I 
Sbjct:   30 VIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGDREELFASLNKKFPVKDLGECTWYDGCAIV 170          
BLAST of mRNA_A-nodosum_M_contig865.32.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 4.140e-29
Identity = 59/142 (41.55%), Postives = 88/142 (61.97%), Query Frame = 1
Query:    4 LLAMAAAKDGELRHFDTEQAYLKADIDEEIYIEIPEEFQGFPGAVGWLSKVIYGLVQAGRCWNNKFCDDMTAVGFEQAKADPCVFRKVVDGEVEMVVVVHVDDILAHTKDQATTDRFAAELGPKFKLKDIGDAGYYMGCHIT 429
            ++A+A  K  +L H+D +QAY+ A + EEIY+  PE      G V  + + +YGL Q+GR W  +  D +   G+EQ + DPC+FRKVVDGEV  ++V++VDDIL    +    D FA+ L  +F +KD+G+  +Y GC I 
Sbjct:  113 VIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGEREDLFAS-LNNRFPVKDLGECTWYDGCAIA 253          
BLAST of mRNA_A-nodosum_M_contig865.32.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 7.520e-29
Identity = 59/142 (41.55%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    4 LLAMAAAKDGELRHFDTEQAYLKADIDEEIYIEIPEEFQGFPGAVGWLSKVIYGLVQAGRCWNNKFCDDMTAVGFEQAKADPCVFRKVVDGEVEMVVVVHVDDILAHTKDQATTDRFAAELGPKFKLKDIGDAGYYMGCHIT 429
            ++A+A  K  +L H+D +QAY+ A + EEIY+  PE      G V  + + +YGL Q+GR W  +  D +   G+EQ + DPCVFRKVVDGEV  ++V++VDDI+    D+   +   A L  KF +KD+G+  +Y GC I 
Sbjct:  310 VIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIV-AADEGEREELFASLNKKFPVKDVGECTWYDGCAIA 450          
BLAST of mRNA_A-nodosum_M_contig865.32.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 8.400e-29
Identity = 60/142 (42.25%), Postives = 86/142 (60.56%), Query Frame = 1
Query:    4 LLAMAAAKDGELRHFDTEQAYLKADIDEEIYIEIPEEFQGFPGAVGWLSKVIYGLVQAGRCWNNKFCDDMTAVGFEQAKADPCVFRKVVDGEVEMVVVVHVDDILAHTKDQATTDRFAAELGPKFKLKDIGDAGYYMGCHIT 429
            ++A+A  K  +L H+D +QAY+ A + EEIY+  PE      G V  + + +YGL Q GR W  +  D +   G+EQ + DPCVFRKVVDGEV  ++V++VDDIL    D+   +   A L  KF +KD+G+  +Y GC I 
Sbjct:  597 VIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIA 737          
BLAST of mRNA_A-nodosum_M_contig865.32.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.080e-28
Identity = 60/145 (41.38%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    1 MLLAMAAAKDGELRHFDTEQAYLKADIDEEIYIEIPEEFQGFPGAVGWLSKVIYGLVQAGRCWNNKFCDDMTAVGFEQAKADPCVFRKVVDGEVEMVVVVHVDDILAHTKDQATTDRFAAELGPKFKLKDIGDAGYYMGCHITRN 435
            ++LA+A  K   L H+D +QAY  A +DEE+++ IP  +      +    + IYGL Q+GR W     D +   GFEQ KADPCVFRK+VD  V MV+V++VDDIL    D+   +   A L  KF  K+ G+  ++ GC I R+
Sbjct:   52 LMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNRGEYEWFDGCAIDRD 195          
BLAST of mRNA_A-nodosum_M_contig865.32.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.140e-28
Identity = 60/142 (42.25%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    4 LLAMAAAKDGELRHFDTEQAYLKADIDEEIYIEIPEEFQGFPGAVGWLSKVIYGLVQAGRCWNNKFCDDMTAVGFEQAKADPCVFRKVVDGEVEMVVVVHVDDILAHTKDQATTDRFAAELGPKFKLKDIGDAGYYMGCHIT 429
            ++A+A  K  +L H+D +QAY+ A + EEIY+  PE      G V  + + +YGL Q+GR W  +  D +   G+EQ + DPCVFRKVVDGEV  ++V++VDDIL    D+   +   A L  KF +KD+G+  +Y GC I 
Sbjct:  456 VIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIA 596          
BLAST of mRNA_A-nodosum_M_contig865.32.1 vs. uniprot
Match: A0A6H5JXE8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.530e-28
Identity = 58/139 (41.73%), Postives = 87/139 (62.59%), Query Frame = 1
Query:    4 LLAMAAAKDGELRHFDTEQAYLKADIDEEIYIEIPEEFQGFPGAVGWLSKVIYGLVQAGRCWNNKFCDDMTAVGFEQAKADPCVFRKVVDGEVEMVVVVHVDDILAHTKDQATTDRFAAELGPKFKLKDIGDAGYYMGC 420
            ++A+A  K  +L H+D +QAY+ A ++EEIY+  PE  +G  G V  + + +YG  Q+GR W  +  D +   G+EQ + DPCVFRKVVDGEV  ++V++VDDIL    D+   +   A L  K  +KD+G+  +Y GC
Sbjct:  113 VIAVATEKGKKLAHWDVKQAYIHAKLEEEIYLRFPEGCRGMSGKVVKVERALYGPKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKVPVKDLGECTWYDGC 250          
BLAST of mRNA_A-nodosum_M_contig865.32.1 vs. uniprot
Match: A0A6H5JEM4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 4.600e-28
Identity = 60/142 (42.25%), Postives = 85/142 (59.86%), Query Frame = 1
Query:    4 LLAMAAAKDGELRHFDTEQAYLKADIDEEIYIEIPEEFQGFPGAVGWLSKVIYGLVQAGRCWNNKFCDDMTAVGFEQAKADPCVFRKVVDGEVEMVVVVHVDDILAHTKDQATTDRFAAELGPKFKLKDIGDAGYYMGCHIT 429
            ++A A  K   L H+D +QAY+ A + EEIY+  PE      G V  + + +YGL Q+GR W  +  D +   G+EQ + DPCVFRKVVDGEV  ++V++VDDIL  T D+   +   A L  KF +KD+ +  +Y GC I 
Sbjct:  381 VIAEATEKGKNLAHWDVKQAYIHAKLKEEIYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-TADEGEREELFASLNKKFPVKDLEECTWYDGCAIA 521          
BLAST of mRNA_A-nodosum_M_contig865.32.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 6.160e-28
Identity = 57/147 (38.78%), Postives = 92/147 (62.59%), Query Frame = 1
Query:    1 MLLAMAAAKDGELRHFDTEQAYLKADIDEEIYIEIPEEFQGFPGAVGWLSKVIYGLVQAGRCWNNKFCDDMTAVGFEQAKADPCVFRKVVDGEVEMVVVVHVDDILAHTKDQATTDRFAAELGPKFKLKDIGDAGYYMGCHITRNRK 441
            ML A+A   + +L HFD EQA+++++++E++Y+ +P+      G +  L K +YGL QA R W+      + A+GFEQ  AD CVFR + DG V +++VVHVDDI A   ++   D+F A+L     +K++G+  +Y GC   RN++
Sbjct:   47 MLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKE 192          
BLAST of mRNA_A-nodosum_M_contig865.32.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.310e-27
Identity = 58/142 (40.85%), Postives = 86/142 (60.56%), Query Frame = 1
Query:    4 LLAMAAAKDGELRHFDTEQAYLKADIDEEIYIEIPEEFQGFPGAVGWLSKVIYGLVQAGRCWNNKFCDDMTAVGFEQAKADPCVFRKVVDGEVEMVVVVHVDDILAHTKDQATTDRFAAELGPKFKLKDIGDAGYYMGCHIT 429
            ++A+A  K  +L H+D +QAY+ A + EEIY+  PE      G V  + + +YGL Q+GR W  +  D +   G+EQ + DPCVF+KVVDGEV  ++V++VDDI+    D+   +   A L  KF +KD+G+   Y GC I 
Sbjct:  362 VIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFQKVVDGEVVGLIVIYVDDIIV-AADEGEPEELFASLNKKFPVKDLGECTCYDGCAIA 502          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig865.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXU1_9PHAE4.570e-3042.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE4.140e-2941.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE7.520e-2941.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE8.400e-2942.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIS9_9PHAE1.080e-2841.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE1.140e-2842.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXE8_9PHAE1.530e-2841.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEM4_9PHAE4.600e-2842.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE6.160e-2838.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZ24_9PHAE1.310e-2740.85Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig865contigA-nodosum_M_contig865:191182..191622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5111.M1VW57
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size441
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.19e-23
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,21AV1@147550|Sordariomycetes
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size441
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870254.4352212-CDS-A-nodosum_M_contig865:191181..1916221680870254.4352212-CDS-A-nodosum_M_contig865:191181..191622Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig865 191182..191622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig865.32.1prot_A-nodosum_M_contig865.32.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig865 191182..191622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig865.32.1

>prot_A-nodosum_M_contig865.32.1 ID=prot_A-nodosum_M_contig865.32.1|Name=mRNA_A-nodosum_M_contig865.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=147bp
MLLAMAAAKDGELRHFDTEQAYLKADIDEEIYIEIPEEFQGFPGAVGWLS
KVIYGLVQAGRCWNNKFCDDMTAVGFEQAKADPCVFRKVVDGEVEMVVVV
HVDDILAHTKDQATTDRFAAELGPKFKLKDIGDAGYYMGCHITRNRK
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mRNA from alignment at A-nodosum_M_contig865:191182..191622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig865.32.1 ID=mRNA_A-nodosum_M_contig865.32.1|Name=mRNA_A-nodosum_M_contig865.32.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at A-nodosum_M_contig865:191182..191622+ (Ascophyllum nodosum dioecious)
ATGCTTTTGGCGATGGCAGCGGCCAAGGACGGAGAGCTGCGCCATTTCGA CACGGAGCAGGCATATTTGAAGGCGGATATTGACGAGGAAATATACATTG AGATCCCCGAGGAGTTCCAGGGGTTTCCGGGGGCAGTGGGATGGCTGAGC AAGGTTATTTACGGACTCGTACAGGCGGGAAGGTGCTGGAACAACAAGTT CTGTGACGACATGACAGCGGTTGGGTTCGAGCAGGCAAAAGCGGATCCGT GTGTGTTCCGCAAGGTTGTTGACGGTGAGGTGGAGATGGTGGTGGTCGTA CACGTAGACGACATTCTTGCCCACACCAAAGACCAAGCGACGACGGATAG ATTCGCGGCTGAGCTTGGACCGAAGTTCAAATTGAAGGACATTGGCGACG CCGGGTACTACATGGGTTGTCACATCACCAGGAACCGCAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig865:191182..191622+

>mRNA_A-nodosum_M_contig865.32.1 ID=mRNA_A-nodosum_M_contig865.32.1|Name=mRNA_A-nodosum_M_contig865.32.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=441bp|location=Sequence derived from alignment at A-nodosum_M_contig865:191182..191622+ (Ascophyllum nodosum dioecious)
ATGCTTTTGGCGATGGCAGCGGCCAAGGACGGAGAGCTGCGCCATTTCGA
CACGGAGCAGGCATATTTGAAGGCGGATATTGACGAGGAAATATACATTG
AGATCCCCGAGGAGTTCCAGGGGTTTCCGGGGGCAGTGGGATGGCTGAGC
AAGGTTATTTACGGACTCGTACAGGCGGGAAGGTGCTGGAACAACAAGTT
CTGTGACGACATGACAGCGGTTGGGTTCGAGCAGGCAAAAGCGGATCCGT
GTGTGTTCCGCAAGGTTGTTGACGGTGAGGTGGAGATGGTGGTGGTCGTA
CACGTAGACGACATTCTTGCCCACACCAAAGACCAAGCGACGACGGATAG
ATTCGCGGCTGAGCTTGGACCGAAGTTCAAATTGAAGGACATTGGCGACG
CCGGGTACTACATGGGTTGTCACATCACCAGGAACCGCAAG
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