mRNA_A-nodosum_M_contig864.19.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig864.19.1
Unique NamemRNA_A-nodosum_M_contig864.19.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig864.19.1 vs. uniprot
Match: D8LKL6_ECTSI (Fe-S-cluster oxidoreductase-like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKL6_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.050e-38
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    1 PLFPEFLRDPQELEMFISMAAEDGWCVHYDKENRACTIYDDRPRFCRVEAETFGDMYGVEPEDMDGFCRSCCSDQIGDVYG 243
            P   E+L DP+E ++++SM   DGWC H+DKE+RACT+Y DRPRFCRVE ETFG MYGVEPEDMD FC SCC++QI DVYG
Sbjct:  152 PDLAEYLPDPEEFDLYMSMTGSDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYG 232          
BLAST of mRNA_A-nodosum_M_contig864.19.1 vs. uniprot
Match: A0A139X7I9_9CYAN (Fe-S cluster protein n=3 Tax=Nostocales TaxID=1161 RepID=A0A139X7I9_9CYAN)

HSP 1 Score: 115 bits (287), Expect = 1.890e-31
Identity = 49/83 (59.04%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 PLFPEFLRDPQELEMFISMAAEDGWCVHYDKENRACTIYDDRPRFCRVEAETFGDMYGVEPEDMDGFCRSCCSDQIGDVYGQR 249
            P   E+L  P+ELE+++SM  +DGWCV+YDKENR C IY +RPRFCRVE E F DMYG+EPE+++ F   CC  QI  VYG R
Sbjct:   22 PDLDEYLS-PKELELYLSMVGDDGWCVNYDKENRECRIYPNRPRFCRVETEVFQDMYGIEPEELNDFAIDCCHQQIEGVYGDR 103          
BLAST of mRNA_A-nodosum_M_contig864.19.1 vs. uniprot
Match: UPI0019087D7A (YkgJ family cysteine cluster protein n=1 Tax=Sphaerospermopsis aphanizomenoides TaxID=459663 RepID=UPI0019087D7A)

HSP 1 Score: 114 bits (284), Expect = 5.420e-31
Identity = 49/83 (59.04%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 PLFPEFLRDPQELEMFISMAAEDGWCVHYDKENRACTIYDDRPRFCRVEAETFGDMYGVEPEDMDGFCRSCCSDQIGDVYGQR 249
            P   E+L  P+E+ +++SM  EDGWCV++D E R CTIY DRPRFCRVEAETF DMYG+EPE+++ F   CC  QI  VYG R
Sbjct:   22 PDLEEYLS-PEEMGLYLSMVGEDGWCVNFDHETRECTIYADRPRFCRVEAETFQDMYGIEPEELNDFAIDCCRQQIDCVYGDR 103          
BLAST of mRNA_A-nodosum_M_contig864.19.1 vs. uniprot
Match: UPI001685C167 (YkgJ family cysteine cluster protein n=1 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=UPI001685C167)

HSP 1 Score: 112 bits (280), Expect = 2.620e-30
Identity = 48/81 (59.26%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 PLFPEFLRDPQELEMFISMAAEDGWCVHYDKENRACTIYDDRPRFCRVEAETFGDMYGVEPEDMDGFCRSCCSDQIGDVYG 243
            P   E+L  P+ELE ++SM  EDGWC+HYD E R C IYDDRPRFCRV  +TF DM+GVEPE+ + F   CC  QI  VYG
Sbjct:   22 PDLDEYLS-PEELEQYLSMVGEDGWCIHYDSELRECQIYDDRPRFCRVRPDTFQDMFGVEPEEFNDFAIECCQQQIEGVYG 101          
BLAST of mRNA_A-nodosum_M_contig864.19.1 vs. uniprot
Match: A0A1E5QE50_9CYAN (Fe-S cluster protein n=2 Tax=unclassified Desertifilum TaxID=2621682 RepID=A0A1E5QE50_9CYAN)

HSP 1 Score: 111 bits (278), Expect = 4.440e-30
Identity = 40/75 (53.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query:   25 DPQELEMFISMAAEDGWCVHYDKENRACTIYDDRPRFCRVEAETFGDMYGVEPEDMDGFCRSCCSDQIGDVYGQR 249
            +P+EL +++S+  EDGWC+H+D++ R C+IY DRPRFCRV+ + FGD+YG+EPE+++ F   CC +QI  VYG+R
Sbjct:   29 NPEELSVYLSLVGEDGWCIHFDQDTRQCSIYADRPRFCRVQQDVFGDLYGIEPEELNDFAIDCCREQIEGVYGER 103          
BLAST of mRNA_A-nodosum_M_contig864.19.1 vs. uniprot
Match: A0A0D8ZWI4_9CYAN (Fe-S cluster protein n=1 Tax=Aliterella atlantica CENA595 TaxID=1618023 RepID=A0A0D8ZWI4_9CYAN)

HSP 1 Score: 111 bits (278), Expect = 5.590e-30
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 PLFPEFLRDPQELEMFISMAAEDGWCVHYDKENRACTIYDDRPRFCRVEAETFGDMYGVEPEDMDGFCRSCCSDQIGDVYG 243
            P   E+L  P+ELE+++SM  EDGWC++YD+ NR C IY DRPRFCRVE+E F DMYG+EPE+++ F   CC +QI  VYG
Sbjct:   22 PDLDEYLL-PEELEVYMSMVGEDGWCINYDRLNRECRIYADRPRFCRVESEIFQDMYGIEPEELNDFAIECCQEQITGVYG 101          
BLAST of mRNA_A-nodosum_M_contig864.19.1 vs. uniprot
Match: A0A1Y0RFK2_9CYAN (Zinc/iron-chelating domain-containing protein n=9 Tax=Nostocales TaxID=1161 RepID=A0A1Y0RFK2_9CYAN)

HSP 1 Score: 111 bits (277), Expect = 6.300e-30
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 PLFPEFLRDPQELEMFISMAAEDGWCVHYDKENRACTIYDDRPRFCRVEAETFGDMYGVEPEDMDGFCRSCCSDQIGDVYGQR 249
            P   E+L  P+ELE+++SM  E GWC++YDKE+R C IY +RPRFCRVE E F DMYG+EPE+++ F   CC  QI  VYG R
Sbjct:   22 PDLDEYLL-PEELELYLSMVGEGGWCINYDKESRECRIYPNRPRFCRVETEVFQDMYGIEPEELNDFAIDCCRQQIEGVYGDR 103          
BLAST of mRNA_A-nodosum_M_contig864.19.1 vs. uniprot
Match: K9SPW2_9CYAN (Uncharacterized protein n=2 Tax=Pseudanabaena sp. PCC 7367 TaxID=82654 RepID=K9SPW2_9CYAN)

HSP 1 Score: 111 bits (277), Expect = 6.480e-30
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   34 ELEMFISMAAEDGWCVHYDKENRACTIYDDRPRFCRVEAETFGDMYGVEPEDMDGFCRSCCSDQIGDVYGQ 246
            EL  ++SM  EDGWC+++D+ NR C IYD RPRFCRVEA  F DMYG+EPE++D F   CC +QI DVYG+
Sbjct:   30 ELAQYLSMVGEDGWCINFDRHNRTCQIYDTRPRFCRVEASVFKDMYGIEPEELDEFAIDCCQEQIADVYGE 100          
BLAST of mRNA_A-nodosum_M_contig864.19.1 vs. uniprot
Match: A0A351L1G4_9CYAN (YkgJ family cysteine cluster protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A351L1G4_9CYAN)

HSP 1 Score: 111 bits (277), Expect = 7.070e-30
Identity = 46/83 (55.42%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 PLFPEFLRDPQELEMFISMAAEDGWCVHYDKENRACTIYDDRPRFCRVEAETFGDMYGVEPEDMDGFCRSCCSDQIGDVYGQR 249
            P   E+L  PQELE+++SM  E+GWC+H+D  NR+C IY  RPRFCRVE ETF DMYG+EPE++  F   CC   I   YG+R
Sbjct:   22 PDLEEYLS-PQELELYLSMVGEEGWCIHFDHSNRSCRIYPQRPRFCRVELETFRDMYGIEPEEVSDFAIDCCHQHIESTYGRR 103          
BLAST of mRNA_A-nodosum_M_contig864.19.1 vs. uniprot
Match: A0A2T1DP76_9CYAN (YkgJ family cysteine cluster protein n=1 Tax=filamentous cyanobacterium CCP2 TaxID=2107700 RepID=A0A2T1DP76_9CYAN)

HSP 1 Score: 110 bits (275), Expect = 1.380e-29
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   25 DPQELEMFISMAAEDGWCVHYDKENRACTIYDDRPRFCRVEAETFGDMYGVEPEDMDGFCRSCCSDQIGDVYGQR 249
            +P+EL +++S+  EDGWC+HYD+E R C IY+ RPRFCRVEAE F D+YGVEP +++ F   CC  QI  VYG R
Sbjct:   28 EPEELALYLSLVGEDGWCIHYDQETRECQIYETRPRFCRVEAEVFHDLYGVEPPELNDFAIECCRQQIEGVYGDR 102          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig864.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKL6_ECTSI2.050e-3867.90Fe-S-cluster oxidoreductase-like n=2 Tax=Ectocarpu... [more]
A0A139X7I9_9CYAN1.890e-3159.04Fe-S cluster protein n=3 Tax=Nostocales TaxID=1161... [more]
UPI0019087D7A5.420e-3159.04YkgJ family cysteine cluster protein n=1 Tax=Sphae... [more]
UPI001685C1672.620e-3059.26YkgJ family cysteine cluster protein n=1 Tax=uncla... [more]
A0A1E5QE50_9CYAN4.440e-3053.33Fe-S cluster protein n=2 Tax=unclassified Desertif... [more]
A0A0D8ZWI4_9CYAN5.590e-3058.02Fe-S cluster protein n=1 Tax=Aliterella atlantica ... [more]
A0A1Y0RFK2_9CYAN6.300e-3056.63Zinc/iron-chelating domain-containing protein n=9 ... [more]
K9SPW2_9CYAN6.480e-3060.56Uncharacterized protein n=2 Tax=Pseudanabaena sp. ... [more]
A0A351L1G4_9CYAN7.070e-3055.42YkgJ family cysteine cluster protein n=2 Tax=Cyano... [more]
A0A2T1DP76_9CYAN1.380e-2957.33YkgJ family cysteine cluster protein n=1 Tax=filam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig864contigA-nodosum_M_contig864:256566..256814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKL6
PFAMsCxxCxxCC
Model size249
Max annot lvl2759|Eukaryota
KEGG koko:K06940
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.36e-39
EggNOG OGsCOG0727@1|root,2RZ66@2759|Eukaryota
Ec32 ortholog descriptionPutative zinc- or iron-chelating domain containing protein
Ec32 orthologEc-16_003430.1
DescriptionPutative zinc- or iron-chelating domain
Cds size249
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870252.9887757-CDS-A-nodosum_M_contig864:256565..2568141680870252.9887757-CDS-A-nodosum_M_contig864:256565..256814Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig864 256566..256814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig864.19.1prot_A-nodosum_M_contig864.19.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig864 256566..256814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig864.19.1

>prot_A-nodosum_M_contig864.19.1 ID=prot_A-nodosum_M_contig864.19.1|Name=mRNA_A-nodosum_M_contig864.19.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
PLFPEFLRDPQELEMFISMAAEDGWCVHYDKENRACTIYDDRPRFCRVEA
ETFGDMYGVEPEDMDGFCRSCCSDQIGDVYGQR
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mRNA from alignment at A-nodosum_M_contig864:256566..256814+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig864.19.1 ID=mRNA_A-nodosum_M_contig864.19.1|Name=mRNA_A-nodosum_M_contig864.19.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig864:256566..256814+ (Ascophyllum nodosum dioecious)
CCTCTCTTCCCAGAATTCCTGCGTGACCCTCAAGAGCTGGAAATGTTCAT ATCGATGGCGGCAGAGGACGGGTGGTGCGTCCACTACGACAAGGAGAACA GGGCGTGCACGATTTACGACGATCGACCGCGGTTCTGCCGCGTGGAGGCG GAGACCTTCGGGGACATGTACGGCGTTGAACCGGAGGACATGGACGGCTT CTGTAGGTCGTGCTGCAGCGATCAGATCGGCGACGTCTACGGTCAACGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig864:256566..256814+

>mRNA_A-nodosum_M_contig864.19.1 ID=mRNA_A-nodosum_M_contig864.19.1|Name=mRNA_A-nodosum_M_contig864.19.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig864:256566..256814+ (Ascophyllum nodosum dioecious)
CCTCTCTTCCCAGAATTCCTGCGTGACCCTCAAGAGCTGGAAATGTTCAT
ATCGATGGCGGCAGAGGACGGGTGGTGCGTCCACTACGACAAGGAGAACA
GGGCGTGCACGATTTACGACGATCGACCGCGGTTCTGCCGCGTGGAGGCG
GAGACCTTCGGGGACATGTACGGCGTTGAACCGGAGGACATGGACGGCTT
CTGTAGGTCGTGCTGCAGCGATCAGATCGGCGACGTCTACGGTCAACGG
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