mRNA_A-nodosum_M_contig8629.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8629.14.1
Unique NamemRNA_A-nodosum_M_contig8629.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8629.14.1 vs. uniprot
Match: D7G172_ECTSI (TPX2_importin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G172_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.280e-10
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 RLRTEASAAVHVPRPNVLTPAEREEAELAEMKKHQFKARSYNAGSIGIGREGAVFKPRHSDK 186
            + RTEA AA +  + +  +  EREEAELAEMKKHQFKA  YNA   G+G E  VF+P+HSDK
Sbjct:  168 KFRTEARAAGYS-KGHFPSREEREEAELAEMKKHQFKALPYNADGFGVGGEQGVFRPQHSDK 228
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8629.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G172_ECTSI2.280e-1058.06TPX2_importin domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8629contigA-nodosum_M_contig8629:23571..24254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size190
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870250.0076015-CDS-A-nodosum_M_contig8629:23570..236691680870250.0076015-CDS-A-nodosum_M_contig8629:23570..23669Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8629 23571..23669 +
1680870250.0282044-CDS-A-nodosum_M_contig8629:24163..242531680870250.0282044-CDS-A-nodosum_M_contig8629:24163..24253Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8629 24164..24253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8629.14.1prot_A-nodosum_M_contig8629.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8629 23571..24253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8629.14.1

>prot_A-nodosum_M_contig8629.14.1 ID=prot_A-nodosum_M_contig8629.14.1|Name=mRNA_A-nodosum_M_contig8629.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
RLRTEASAAVHVPRPNVLTPAEREEAELAEMKKHQFKARSYNAGSIGIGR
EGAVFKPRHSDKP
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mRNA from alignment at A-nodosum_M_contig8629:23571..24254+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8629.14.1 ID=mRNA_A-nodosum_M_contig8629.14.1|Name=mRNA_A-nodosum_M_contig8629.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=684bp|location=Sequence derived from alignment at A-nodosum_M_contig8629:23571..24254+ (Ascophyllum nodosum dioecious)
AGGCTGAGGACGGAGGCTAGTGCTGCGGTGCACGTCCCACGTCCAAACGT
CTTGACTCCCGCGGAGCGCGAGGAGGCCGAACTCGCCGAAATGAAAAAGG
TGAGAGAGAAAGGAACACTAATACACTAGACTAGCTCTAATACATTCTCT
AATACATTGCCAGTGTGATAGTTTGGAGGCTGAACTCGCCGAAATAAAAA
GGGTGAGAGAGAAAGGAACACTAATACAATATAGACGCTGAACTCGCGTA
AATATAAAAGGTGAGAATATTGAGGAATATTAAGAATATTAAGAGCACCA
TTACACCGAAAATAGAATATATGTTATAAATATAATATAGGTAGGGGGTA
GGGAGGGCTATATTTTTCCGATCCACATAATAAATCGCCTCCTCAGAAAT
TAATATCAACATTAATATTAATATATAAACTAAAACCAGAGAGAAGGTCA
GGTTTTGACTTGAATTGGAGATTTACCGATTTATGTTATGGGGGGGGGAG
GTGCATTGAATTCAGGTCGTTGTCGGAGCATATATGTCTTAGTGAATGTT
TGTGACTCTTTGACTTTCTTCTTCCTTTCCTGGCATGTTACAGCACCAGT
TCAAGGCGAGATCTTACAACGCCGGCAGCATCGGAATTGGTCGAGAGGGA
GCCGTGTTCAAGCCTCGTCATAGCGACAAGCCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8629:23571..24254+

>mRNA_A-nodosum_M_contig8629.14.1 ID=mRNA_A-nodosum_M_contig8629.14.1|Name=mRNA_A-nodosum_M_contig8629.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig8629:23571..24254+ (Ascophyllum nodosum dioecious)
AGGCTGAGGACGGAGGCTAGTGCTGCGGTGCACGTCCCACGTCCAAACGT
CTTGACTCCCGCGGAGCGCGAGGAGGCCGAACTCGCCGAAATGAAAAAGC
ACCAGTTCAAGGCGAGATCTTACAACGCCGGCAGCATCGGAATTGGTCGA
GAGGGAGCCGTGTTCAAGCCTCGTCATAGCGACAAGCCT
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