prot_A-nodosum_M_contig86.33.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig86.33.1
Unique Nameprot_A-nodosum_M_contig86.33.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length70
Homology
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BLAST of mRNA_A-nodosum_M_contig86.33.1 vs. uniprot
Match: A0A6H5JRZ5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.010e-20
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = 0 
Query:    3 DKSLFTTGPVSTSWLILRPSTSQSTDSPPSFSRSRTSRVDRRSVKLPSIRAIPEGI 58
            DKSLF TGP STSWLI RPSTSQ+TDSPPSFS SRT RVDRRSVKLPSI AIPEGI
Sbjct:  456 DKSLFATGPASTSWLISRPSTSQTTDSPPSFSISRTFRVDRRSVKLPSIPAIPEGI 511
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig86.33.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JRZ5_9PHAE1.010e-2087.50Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig86contigA-nodosum_M_contig86:631512..631721 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig86.33.1mRNA_A-nodosum_M_contig86.33.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig86 631512..631721 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig86.33.1 ID=prot_A-nodosum_M_contig86.33.1|Name=mRNA_A-nodosum_M_contig86.33.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=70bp
CGDKSLFTTGPVSTSWLILRPSTSQSTDSPPSFSRSRTSRVDRRSVKLPS
IRAIPEGIYFRYDANGGSR*
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