mRNA_A-nodosum_M_contig856.24.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig856.24.1
Unique NamemRNA_A-nodosum_M_contig856.24.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig856.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig856contigA-nodosum_M_contig856:188645..188828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15702159
PFAMsDUF1768
Model size184
Max annot lvl33208|Metazoa
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.32e-11
EggNOG OGsCOG3236@1|root,2S4FY@2759|Eukaryota,3A6B0@33154|Opisthokonta,3BSEE@33208|Metazoa
DescriptionDomain of unknown function (DUF1768)
Cds size183
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870241.8346798-CDS-A-nodosum_M_contig856:188645..1888281680870241.8346798-CDS-A-nodosum_M_contig856:188645..188828Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig856 188646..188828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig856.24.1prot_A-nodosum_M_contig856.24.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig856 188646..188828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig856.24.1

>prot_A-nodosum_M_contig856.24.1 ID=prot_A-nodosum_M_contig856.24.1|Name=mRNA_A-nodosum_M_contig856.24.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=61bp
QNSSSNACLFGDDLALSAIRATDDPREQKRLDRHVRHFDPDFWQQECENS
ALRGNLAKFSQ
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mRNA from alignment at A-nodosum_M_contig856:188645..188828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig856.24.1 ID=mRNA_A-nodosum_M_contig856.24.1|Name=mRNA_A-nodosum_M_contig856.24.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=184bp|location=Sequence derived from alignment at A-nodosum_M_contig856:188645..188828- (Ascophyllum nodosum dioecious)
CAGAACAGTTCCTCGAATGCTTGCCTATTTGGCGACGACTTGGCGCTCTC
GGCAATACGTGCTACTGACGATCCCCGAGAGCAAAAACGCCTCGACCGTC
ATGTACGCCACTTCGATCCCGATTTCTGGCAGCAAGAATGCGAAAATTCA
GCCCTCCGAGGCAACCTGGCAAAATTCTCCCAGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig856:188645..188828-

>mRNA_A-nodosum_M_contig856.24.1 ID=mRNA_A-nodosum_M_contig856.24.1|Name=mRNA_A-nodosum_M_contig856.24.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=183bp|location=Sequence derived from alignment at A-nodosum_M_contig856:188645..188828- (Ascophyllum nodosum dioecious)
CAGAACAGTTCCTCGAATGCTTGCCTATTTGGCGACGACTTGGCGCTCTC
GGCAATACGTGCTACTGACGATCCCCGAGAGCAAAAACGCCTCGACCGTC
ATGTACGCCACTTCGATCCCGATTTCTGGCAGCAAGAATGCGAAAATTCA
GCCCTCCGAGGCAACCTGGCAAAATTCTCCCAG
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