mRNA_A-nodosum_M_contig8547.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8547.2.1
Unique NamemRNA_A-nodosum_M_contig8547.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8547.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8547contigA-nodosum_M_contig8547:12962..16824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size553
Hectar predicted targeting categoryother localisation
Exons4
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870237.510953-CDS-A-nodosum_M_contig8547:12961..132361680870237.510953-CDS-A-nodosum_M_contig8547:12961..13236Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8547 12962..13236 +
1680870237.526375-CDS-A-nodosum_M_contig8547:13556..136801680870237.526375-CDS-A-nodosum_M_contig8547:13556..13680Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8547 13557..13680 +
1680870237.5434842-CDS-A-nodosum_M_contig8547:14025..141131680870237.5434842-CDS-A-nodosum_M_contig8547:14025..14113Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8547 14026..14113 +
1680870238.825316-CDS-A-nodosum_M_contig8547:16760..168221680870238.825316-CDS-A-nodosum_M_contig8547:16760..16822Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8547 16761..16822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8547.2.1prot_A-nodosum_M_contig8547.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8547 12962..16822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8547.2.1

>prot_A-nodosum_M_contig8547.2.1 ID=prot_A-nodosum_M_contig8547.2.1|Name=mRNA_A-nodosum_M_contig8547.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=183bp
PTASPVQHTSSLFPALCNGSGSGSEFALVELLSKVRLERTQGETPLEESV
APEASLAAAKVLTGTGTGRGTSLKLEWGMAPSSQQKMASLTGRIRVAPLV
GDSTTLLQELKVADPKTLKLMENGSREDEDTLLLDKAIKTCRESAKITAI
KAAAAPGPAPASRPSESANSHSDAESIKTKGAS
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mRNA from alignment at A-nodosum_M_contig8547:12962..16824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8547.2.1 ID=mRNA_A-nodosum_M_contig8547.2.1|Name=mRNA_A-nodosum_M_contig8547.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3863bp|location=Sequence derived from alignment at A-nodosum_M_contig8547:12962..16824+ (Ascophyllum nodosum dioecious)
CCTACGGCGTCACCGGTCCAACACACCTCATCGCTCTTCCCAGCCCTTTG
CAACGGCTCCGGTAGCGGTAGCGAGTTCGCCCTCGTGGAGCTCCTCTCCA
AGGTGCGCCTAGAGAGAACCCAGGGGGAAACGCCACTCGAGGAGTCGGTC
GCGCCGGAGGCTAGTCTTGCAGCCGCGAAGGTGTTAACGGGAACAGGAAC
AGGAAGAGGAACATCGCTCAAGCTGGAATGGGGAATGGCTCCGTCGAGCC
AGCAGAAGATGGCCAGTTTAACGGGGTGCAGTACTCTAGAGCTACTTGGT
ATATAGTTCCAACTGCATTATTAGTATATATATATCTATATATTAATATT
ATTAGTAGGCTCTGTGTGCTGCATGAAGAGGCCCGCCCCCGCTTACGACT
CTTCACGATAGATACTAATATTAATAGAGCTATTTGTCTCACACAAGTGT
CTTGATCCATTGTATGATAGATGAGAAAGAAAATCGATGCTCGACGTTAT
GATTTGTGCATACTCTCTCTCTCGCCCGCTGGAAGTTTCGTCTGGATGTA
TCGACCTATCGACCCCCACCTGTGTGTTTCCGTCTTTTTCGGCAGGCGCA
TCAGGGTAGCGCCGCTGGTCGGCGACAGCACGACTCTCCTGCAGGAGCTC
AAGGTCGCCGACCCCAAGACGTTGAAGCTAATGGAGAATGGATCTAGGGA
AGACGAGGATACACTTTTGGTAATTATTGTAGTAGAAAACTGAGTTAGAT
GCTACGTTATACAGTAAAAAGGGGAAGCAGGGAGTCTGTCCCCGTGGAGG
CGTTCTCTCGTGATACAAGTATTAATAGTACGATTCAGACGACCACTCTT
GACCATTGATCTTTTTCCGAAAACTCTGTTACACTACCATAATTTCCGTG
CTCTTGCTCTTTTTTTTTCTCGCTTTTTGCCGTACCAGTAGAGCTATACC
AGTATCATAGACTATGTTTTATGCCTCGCTGTGCGGTTCTCCTTTTTTTA
ACGATATATTTGTTTTCGCTCTTTTCCCAATGACTGTTCTGTTATTGTTA
TTTTATTTAACGAGCTTGATAAGGCCATCAAGACTTGTCGGGAATCTGCC
AAGATTACAGCAATTAAAGCAGCTGCGGCACCTGGACCAGCACCAGCTTC
CCGTGAGCATATCACTTTACATATATTATATACTGTATTATATACTTCGA
AGTACTGTATTATGTATTGTGCACCTGGTATCAATATTAGCTCGAATCTT
CACTTGACTCAACAGCAGAACAAAGTGCTTCGTATCTATGTTTTGTGATT
GTCATGACTCTGTATCGCAGAAGTTTCTTGATTTTTTTTAATTAGAGTTA
TAGCGCTTGCTCGGGCACAGTAGTGGATGATAGCAAAAAGAAGGCACTTG
AAATGTACCAACTGCCACTTTTAACGGTTTTTATTACTGGGTACGTGTGT
GTTTGGGTATGGAGAAGCCAATTTTGTCTTGGATCGGCGTGTGTATTTGT
TTTTGAATGTTTCTCCCCCCCTGCTGTTAACGAAAATAACTTTTAGGCCT
ACACTTACACTGTTAGTTACACTTAAACTTACTATCCCACCAGACGATAG
GCGAGCTCCACGATTTTGAACGCCCTACTAATCTCTGCCAAATTTCGATT
GTCGATCCATTCAAGAGCTCAACGTTGATAGTTGTTATAGTAGTAAGCCG
AAGCACTAACTAACTGAAGTTGAGTAAGAGGCGTTTGATTTGTTGCAATG
CATGAATGTCTGTCCAGAACACGGGATTGGTCTAATGCTTGTGGGTCGTT
TCGTCGACCCGTCCTTTTTACGACACCCGTAATATAAATGGTTCATAAAA
AAAGTAAATAAAGGCTTAAAATGACCAAGTCGAACACAAAAAAAAAAACA
TACGCACACACGCCCGAAACAGGCCCGTCAGAGTCTGCCAATTCGCACTC
GGACGCTGAGAGCATCAAGACCAAACCAAAGGTGCCTCAACGGTGCCTCC
AAGCCGAAACGACGGAAGAATACCAGGAGAAAAAAGAGCGGACGCATCAA
AACGCCGAAAGAAAGCAATGAGGTTTGCCATAGAGTTGGTGGCGTCGATG
GCTCTCGCGAGGGAGAAACCATCGCGCCCCTGCACCAGGCGGCGCCCCGC
GGAGACAGCAAGGTTGGGATCGCTGGAAAGATTGACGAGATTCGGACGGA
TTTCGCGGATTCAGACGACAACATTCCGTTGCCGGTGGAAGTGCCGGCGT
TCGAGGGGCAGGAGGAGGCGATGCTAGTACGGGAGCTGAGGAAGGATCGC
CTGCCTGGCAGGATCATCGGAGACAATGCCAGTTGCAGAGATAGAGATAA
AGATACCAGTGGAGACACGGTGCGTGCCTTTGTCTCAATTGTGTGTACAA
CGCTATGTAGTATAGTACCAGTATTTATTTTATACTGGTACCTTCTTTTC
CGGTTATGTAAGCTTTCAGCACCTTGTCGCTTCCCTCTCTGCTTCCTTGC
TTACCCCTATTCCGGTAGGAGTATTCtTGAGAGAGAGAGAGATCCTCGGT
CGGCACCCCCTTTATCAACACTCCTGGTCTCTCTACCTGTGTGTGTGTGT
GTGTGTGTGTGTATTTATTAAATTGCACATAACCGCGCAATCCGGCCTTG
TCATCCTAGTCATTCTATGCCACTCGCGTTGATCTTCCCAAGGGGGATCA
GTGTGTGTGTGTGTGTGTGTGTGTGTATTTATTAAAAACATAACTGATCA
ATCCGGCCTTGTCATCCTAGTCATTCTATGCCACTCGCATTGATCCTCCC
AAGGGGGATCAGTGTGTGTGTGTGTATTTATTAAATTGCACATAACCACG
CAATCCGGCCCTGTCATCCTAGTCATTCTATTGCATTGATCCTCGAGGGG
GATCAATGATACTTATTACGAAAACCTCTGATCAGACGCGAAAGGGGACA
CGCTCTTCTACTTGTACAATTCTTACTTAAGCTCAGAGTTCCTtgTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTATTTATTAAATTGCAC
ATAACCGCGCAATCAGGCCCAGTCATCCTAGTCATTCTATGCCACTCGCA
TTGATCCTCCCAAGGGGGGATCAATGATGCTTGTTACGAAAACCTCTGTG
TGTGTGTGTGCGTGTGCGTGTGTGTGACTCGTACGATACTTCTTGGCTTG
TTTTTTTTTCGTTCATTGGTTGAGTCGCTCTTTTCCCTTcCCTCGTCCCC
ATCGTcCCCCTTGTGCTGCTGCTGCTGCTGCTGGTAGTTGACCATCTTGC
CGGCATTTGAACCCAAGAATGGCGGAGCTGACGACACGATCACACCTACT
GCTGCTACCGTTGCTACAGCCCTAGGGCTTCCCCTCAGTGAGCGCCTTGC
GTCCGATGCAGACAAGCGTCCGATGTTTGAGCATCGTCTGGTGGAACAGT
CGGGAATATTACTATCCCACCAGACGATAGGCGAGCTCCAAGATTTTGAA
CGCCGTACTAATCTCTGCCAAATTTCGATTGTCGATCCATTCAAGAGCTC
AACGTTGATAGTTGTTATAGGAGTAAGCCGAAGCACTAACTAACTGAAGT
TGAGTAAGAGGCGTTTGATTTGTTGCAATGCATGAATGTCTGTCCAGAAC
ACGGGATTGGTCTAATGCTTGTGGGTCGTTTCGTCGACCCGTCCCTTTTA
CGACACCCGTAATATAAATGGTTCATAAAAAAGTAAATAAAAGCTTAAGA
TGACCAAGTCGAACACCAAATAAAACATACGCACACACGCCCGAAACAGG
CCCGTCAGAGTCTGCCAATTCGCACTCGGACGCTGAGAGCATCAAGACCA
AAGGTGCctCCAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8547:12962..16824+

>mRNA_A-nodosum_M_contig8547.2.1 ID=mRNA_A-nodosum_M_contig8547.2.1|Name=mRNA_A-nodosum_M_contig8547.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=549bp|location=Sequence derived from alignment at A-nodosum_M_contig8547:12962..16824+ (Ascophyllum nodosum dioecious)
CCTACGGCGTCACCGGTCCAACACACCTCATCGCTCTTCCCAGCCCTTTG
CAACGGCTCCGGTAGCGGTAGCGAGTTCGCCCTCGTGGAGCTCCTCTCCA
AGGTGCGCCTAGAGAGAACCCAGGGGGAAACGCCACTCGAGGAGTCGGTC
GCGCCGGAGGCTAGTCTTGCAGCCGCGAAGGTGTTAACGGGAACAGGAAC
AGGAAGAGGAACATCGCTCAAGCTGGAATGGGGAATGGCTCCGTCGAGCC
AGCAGAAGATGGCCAGTTTAACGGGGCGCATCAGGGTAGCGCCGCTGGTC
GGCGACAGCACGACTCTCCTGCAGGAGCTCAAGGTCGCCGACCCCAAGAC
GTTGAAGCTAATGGAGAATGGATCTAGGGAAGACGAGGATACACTTTTGC
TTGATAAGGCCATCAAGACTTGTCGGGAATCTGCCAAGATTACAGCAATT
AAAGCAGCTGCGGCACCTGGACCAGCACCAGCTTCCCGCCCGTCAGAGTC
TGCCAATTCGCACTCGGACGCTGAGAGCATCAAGACCAAAGGTGCctCC
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