mRNA_A-nodosum_M_contig854.30.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig854.30.1
Unique NamemRNA_A-nodosum_M_contig854.30.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig854.30.1 vs. uniprot
Match: D7FPI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI4_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.270e-35
Identity = 72/84 (85.71%), Postives = 76/84 (90.48%), Query Frame = 3
Query:  213 MNEFNDLFVAAREEMEFAAESKETTYFDEEASAAKEVVEQAVGLFEEVLGSVDEAKRTEIMRQSGLRVEQLKAELDQLLESDDH 464
            M+EFNDLFV AREEME+A ESKETTYFDEEA+AAKE VE+AV LFEEVL SVDE KRTEIMR SGLRVEQLKAELDQLL SDDH
Sbjct:    1 MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLRSVDEKKRTEIMRSSGLRVEQLKAELDQLLISDDH 84          
BLAST of mRNA_A-nodosum_M_contig854.30.1 vs. uniprot
Match: A0A7S2CH79_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CH79_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.950e-21
Identity = 51/91 (56.04%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  192 DEELARKMNEFNDLFVAAREEMEFAAESKETTYFDEEASAAKEVVEQAVGLFEEVLGSVDEAKRTEIMRQSGLRVEQLKAELDQLLESDDH 464
            D EL ++++  NDLFV AREE+E A ESKETTY+DEEA  A+E VE A+  + ++L S++E  R E  R +GL++EQLKAEL+ LL SDDH
Sbjct:    9 DPELRKRVDSLNDLFVEAREEIEMAEESKETTYYDEEAEIAQEAVEAALAEYGDILNSLEEPARGEFQRGNGLKMEQLKAELEILLHSDDH 99          
BLAST of mRNA_A-nodosum_M_contig854.30.1 vs. uniprot
Match: A0A836C9H1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9H1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.270e-20
Identity = 50/92 (54.35%), Postives = 68/92 (73.91%), Query Frame = 3
Query:  189 SDEELARKMNEFNDLFVAAREEMEFAAESKETTYFDEEASAAKEVVEQAVGLFEEVLGSVDEAKRTEIMRQSGLRVEQLKAELDQLLESDDH 464
            +DE + RKM+EFNDLFV AREE+++A ESKETTYF++E  AA+  VE A+  F E+L  V+E ++  IMR +GL+VEQLK EL  L+   +H
Sbjct:   64 NDEAIRRKMDEFNDLFVEAREEIQYAGESKETTYFNDEVKAAQAAVESALECFSELLNGVEEEQKQAIMRSNGLKVEQLKQELQLLMIEHEH 155          
BLAST of mRNA_A-nodosum_M_contig854.30.1 vs. uniprot
Match: A0A7S4JN07_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JN07_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.130e-19
Identity = 48/90 (53.33%), Postives = 68/90 (75.56%), Query Frame = 3
Query:  180 STLSDEELARKMNEFNDLFVAAREEMEFAAESKETTYFDEEASAAKEVVEQAVGLFEEVLGSVDEAKRTEIMRQSGLRVEQLKAELDQLL 449
            S+LS++EL  +++EF DLFV AR  +E  A+S +TTYFDEEA AAKE V++AV  F+ ++G +DE  +  +MRQ+GL+V QLK ELD +L
Sbjct:   75 SSLSEDELRSRLDEFQDLFVEARLSIEDCADSADTTYFDEEAEAAKEAVDEAVSAFDTLIGELDEETKGRVMRQNGLKVAQLKGELDLVL 164          
BLAST of mRNA_A-nodosum_M_contig854.30.1 vs. uniprot
Match: A0A7S2SM76_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SM76_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 9.000e-15
Identity = 40/82 (48.78%), Postives = 62/82 (75.61%), Query Frame = 3
Query:  210 KMNEFNDLFVAAREEMEFAAESKETTYFDEEASAAKEVVEQAVGLFEEVLGSVDEAKRTEIMRQSGLRVEQLKAELDQLLES 455
            ++NE +DLFV AREE++ A ES  TTY++EEA AAKE VE A+  ++ +LG++++    E  R +GL++EQL+AEL+ L+E+
Sbjct:   19 ELNELSDLFVEAREEIDLAMESIGTTYYNEEAEAAKEAVEAAISKYQAILGNLEDPHSGEFQRGNGLKMEQLRAELEGLIEA 100          
BLAST of mRNA_A-nodosum_M_contig854.30.1 vs. uniprot
Match: A0A2G2ZQ26_CAPAN (Uncharacterized protein n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G2ZQ26_CAPAN)

HSP 1 Score: 80.1 bits (196), Expect = 1.370e-14
Identity = 42/82 (51.22%), Postives = 61/82 (74.39%), Query Frame = 3
Query:  207 RKMNEFNDLFVAAREEMEFAAESKETTYFDEEASAAKEVVEQAVGLFEEVLGSVDEAKRTEIMRQSGLRVEQLKAELDQLLE 452
            R++++ N  F  AREE+E A ESKET YF+EEA  A++ V++ + L++E+LG V E+++  I R  GL++EQLKAELDQL E
Sbjct:   77 REVDKINLKFAEAREEIESAMESKETVYFNEEADCARDAVKEVLDLYQELLGKVSESEKGVIQRSMGLKIEQLKAELDQLNE 158          
BLAST of mRNA_A-nodosum_M_contig854.30.1 vs. uniprot
Match: A0A7S2A9P4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9P4_TRICV)

HSP 1 Score: 79.3 bits (194), Expect = 2.620e-14
Identity = 42/95 (44.21%), Postives = 66/95 (69.47%), Query Frame = 3
Query:  165 PRAGLSTLSDEELARKMNEFNDLFVAAREEMEFAAESKETTYFDEEASAAKEVVEQAVGLFEEVLGSVDEAKRTEIMRQSGLRVEQLKAELDQLL 449
            P +  +TLSD++L  ++ +F + F  AR  +E  A++ +TTYFDEEA AA+E V+ A+  FE +L  +DE  +  ++RQ+GL+VEQLK EL+ +L
Sbjct:   60 PFSSGATLSDDDLRSRLEDFQEQFAEARLCIEDCADAADTTYFDEEADAAREAVDLALKTFESILAELDEETKGRVVRQNGLKVEQLKGELELVL 154          
BLAST of mRNA_A-nodosum_M_contig854.30.1 vs. uniprot
Match: C1E637_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E637_MICCC)

HSP 1 Score: 80.1 bits (196), Expect = 2.680e-14
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 3
Query:  105 PSESRAAWYLAQEKLPG--FRVPRAGLSTLSDEELARKMNEFNDLFVAAREEMEFAAESKETTYFDEEASAAKEVVEQAVGLFEEVLGSVDEAKRTEIMRQSGLRVEQLKAELDQLLESDD 461
            PS+    W  A  K+ G  F    A  + LS  E  ++M+E ND F  AREE+E A E+  TTYF+EEA  AKEV E+ +G++ ++   +D  +R    R  G+++EQLKAEL QL  + D
Sbjct:   67 PSQLDQHWVNAFHKIHGRGFASSAAARAGLSPAETKKRMDEINDNFAEAREEIEAAMEAVGTTYFNEEAEYAKEVTEKTLGMYYKLCEEMDPEERAATQRAMGMKMEQLKAELKQLDHAHD 187          
BLAST of mRNA_A-nodosum_M_contig854.30.1 vs. uniprot
Match: UPI001C4FFF6E (embryogenesis-like protein n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4FFF6E)

HSP 1 Score: 76.3 bits (186), Expect = 5.330e-14
Identity = 39/82 (47.56%), Postives = 58/82 (70.73%), Query Frame = 3
Query:  201 LARKMNEFNDLFVAAREEMEFAAESKETTYFDEEASAAKEVVEQAVGLFEEVLGSVDEAKRTEIMRQSGLRVEQLKAELDQL 446
            ++R+++E N  F  AREE+E A ESKET YFDEEA +A+E  +  + +F+ +L  + E +R  + R  GL++EQLKAEL+QL
Sbjct:    1 MSREIDEINLKFAEAREEIEMALESKETVYFDEEAESAREAAKVVLDMFQGLLAKLPENERASLQRSMGLKIEQLKAELEQL 82          
BLAST of mRNA_A-nodosum_M_contig854.30.1 vs. uniprot
Match: A0A7S0FJV1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJV1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.690e-14
Identity = 41/97 (42.27%), Postives = 68/97 (70.10%), Query Frame = 3
Query:  177 LSTLSDEELARKMNEFNDLFVAAREEMEFAAESKETTYFDEEASAAKEVVEQAVGLFEEVLGSV-DEAKRTEIMRQSGLRVEQLKAELDQLLESDDH 464
            L+T+ + +L ++M+EF DLFV AR  +E A ES+ETTYF E+  AA+E V++AV  F+ ++  + D+ ++  ++R +GL+VEQLK EL  +++   H
Sbjct:   80 LATMPENDLRKRMDEFQDLFVEARLCIEDAQESQETTYFAEDLDAAQEAVDEAVAAFKGIVNDIEDKDQKNSVLRSNGLKVEQLKGELQMIIDGHGH 176          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig854.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPI4_ECTSI1.270e-3585.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CH79_9STRA1.950e-2156.04Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836C9H1_9STRA1.270e-2054.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4JN07_9STRA5.130e-1953.33Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2SM76_9STRA9.000e-1548.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2G2ZQ26_CAPAN1.370e-1451.22Uncharacterized protein n=1 Tax=Capsicum annuum Ta... [more]
A0A7S2A9P4_TRICV2.620e-1444.21Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
C1E637_MICCC2.680e-1441.32Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
UPI001C4FFF6E5.330e-1447.56embryogenesis-like protein n=1 Tax=Macadamia integ... [more]
A0A7S0FJV1_9STRA5.690e-1442.27Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig854contigA-nodosum_M_contig854:238972..244038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3649.evm.model.supercontig_26.114
Model size968
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.37e-16
EggNOG OGs2CMFC@1|root,2S3XZ@2759|Eukaryota,37W2K@33090|Viridiplantae,3GKBR@35493|Streptophyta,3I1PU@3699|Brassicales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_000670.1
Cds size255
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig854.30.1prot_A-nodosum_M_contig854.30.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig854 239184..243537 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870236.4533918-UTR-A-nodosum_M_contig854:238971..2391831680870236.4533918-UTR-A-nodosum_M_contig854:238971..239183Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig854 238972..239183 +
1680870236.524297-UTR-A-nodosum_M_contig854:243537..2440381680870236.524297-UTR-A-nodosum_M_contig854:243537..244038Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig854 243538..244038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870236.4723632-CDS-A-nodosum_M_contig854:239183..2392131680870236.4723632-CDS-A-nodosum_M_contig854:239183..239213Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig854 239184..239213 +
1680870236.4858956-CDS-A-nodosum_M_contig854:242590..2426781680870236.4858956-CDS-A-nodosum_M_contig854:242590..242678Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig854 242591..242678 +
1680870236.4983802-CDS-A-nodosum_M_contig854:243143..2432161680870236.4983802-CDS-A-nodosum_M_contig854:243143..243216Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig854 243144..243216 +
1680870236.511275-CDS-A-nodosum_M_contig854:243473..2435371680870236.511275-CDS-A-nodosum_M_contig854:243473..243537Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig854 243474..243537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig854.30.1

>prot_A-nodosum_M_contig854.30.1 ID=prot_A-nodosum_M_contig854.30.1|Name=mRNA_A-nodosum_M_contig854.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp
MNEFNDLFVAAREEMEFAAESKETTYFDEEASAAKEVVEQAVGLFEEVLG
SVDEAKRTEIMRQSGLRVEQLKAELDQLLESDDH*
back to top

mRNA from alignment at A-nodosum_M_contig854:238972..244038+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig854.30.1 ID=mRNA_A-nodosum_M_contig854.30.1|Name=mRNA_A-nodosum_M_contig854.30.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5067bp|location=Sequence derived from alignment at A-nodosum_M_contig854:238972..244038+ (Ascophyllum nodosum dioecious)
CAAAATGGAATATCATCTGTTTTCGACCTATTCGTGCACAATGGAGAGCA TCCTCAGCATTATCTCCAGTGTCACGAGCAACATCAATACAGCGACGAGC CCTACCGTCAGAATCGAGAGCAGCATGGTACTTAGCCCAAGAAAAGCTTC CTGGGTTTCGCGTGCCTCGCGCAGGACTTTCCACGTTATCAGATGAGGAG CTGGCGCGCAAGATGAACGAGTTCAATGATCTCTTCGTGGCGGTATGTTA CCGTAAGAACAGCCCACCTGTGGAACTTGACAGCGCATAAGAGGTTTTGT CTTTGCAGCCAGCCTATGATCCATGCTCATCGTGTCTTTAATTTTTGGTT TGCTTAGTGCCCCTGCAAGTCAATTAATTTAAGTACAATATATTGGTGGG CTTCTCCCCGACATTATACTGTTGACCCCATGTTACTACCATCGGGGAAC CCGTTTAAATGCCATGAAGAGGTTTTGTCTTTGCAGCCTCCGACCTAAAC GTTTTGACATTTTTTACCCCTGCTGGGGGATGCTCAGGAGGTCTAGGCGC GTTCATATTTTTCATGAGTCAAACCTCTTGACATTTTTTCTTGGGAGATG TCACTTTTCCCGAATATTAGGCCACTCGCATGGGAGATCGGAAACGATAA ATTCCAGATCGGAAATTGGCCGTTTTTGATCTGACAAAATCGTTTTCGAT CCGAAAACAAAAGCTACAGTACTACACTAATGTATAACGGTGAGCTTCTC CCCGACATTATACTGTTGACCCAATGTTACTACCATAGGGGAACCCGTTT AAATGCCTTGAAGAGGTTTTGTATTTGCAGCCTATGATCCACCTAAACGT TTGACATTTTCCCCCCTGACTGAGGGATGTTCAGAAGGTCTAGACGCGTT CAGATTTTTCTTCAAAAGCCTACCACGGCTGTACCCCCTGACAGCTGTAT GCTGTATGTGGGAGATCGAAAATCTGGCTGGGTTTTCATTGGCTGGTGGG CGGCTTGCCGATGATGGGGATCACCAGGAAATTTAATATACGTGTACTTA CGCTGCTGTATATAGAGCTGTTTAGGGTACAGCTCCTGTACATTTGTACT CGTTGGATGTCTACTTAAATAATCTGTACTTGCTGCAGTACAGGCGTAGC CACAATATAGTGTTTTGCCTGCTGTTCGTGCAGCATTTTTTTTTTTCATG TCGTACGACTCGCATATTCAACCAGCCAACGCAGTTCTTTGATAGCTCCT TTAGCAGTTTAAGTTGTTCGCTTCCGCGATGTACACTAGCCCTTGTACTG CCGTTGACTGAGTATGATAGCAGTACTCCTAGCCACCAATACGATAGATA GCACGTCAAGGCTCACTCATCTACCCGATGGCTTGAGCTATCATACCATG GCACCTTTGTCCGCATTTTCGGTTGCCGACAGACTAATAATAGGTCACAC CATGTACGTTTGTGCGAACATATATAGAGCTGTAAGTATGTATGCATGGT CACACATATAGCCAAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTG CTCGTGGTCAGCTGAACAGGAAAAATGAACATTTACCTGTTCCATTTCGC GCTTGAGAATTTGGTCTCGCGAGACGGGTTCGGCAGTCCCGTCCCGCGTC CGCCTACTCATTTCTATGCTCAGGCTGAATCTGGTTCTTACTTACGGCCC GAGTTCCGCGGCGACGTCCATTTATTTATTTAAACCGCCATACGTCATAG GGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGTACCGATGGCGTTCA CTGCGGAGAGTCCACCAACACAGGGCCAGTAAACCTCAAGGTAGTTAGTT CCAAACGGGTGCTCCCTTGGCAGGTCGTCATGGACCAATTAATATAGTAT GATATTATTATTATTTCCGCACATAAGTCTGATCTCTCGAACCCGTGGTC ACAGACGCAGGCTTCCCTTTCCATACCATCGCTACATCCAAAAAACACAA ACAAAAGAAGAGAAAGAGAGGAAAAAAATAACAGACGAGAAAACCTTCCC CCCATCTGATCGGAGGGGAAGGGAAAAAATAAAACAAGAGCAAAAAAACA AAAGCAAAGACCGACCACGCATATCCGAGAGACAAATAGATAAGCAAGCA AGGCAGACCAAGTGTCAAGACCACACGAACTGTCGATACCGTACGCGAGT CGCTAAGCACACCCCACCAGTCGCTGGGGGGGGGCAGCGGACAGTCAAGC GTTGAGACAAGGAGCACCAGTATAGCAACGCGAAAAATCACCCGCTACTC TTCTGCGGCATTCAAATCGACATCATGGGAGCTCAAACGGCAAAGTAGCG AAAAGTTCCTTCGCGTGGCGGGCGTTGGTCTCGTTCACACGCTTGGTGGA CCAGGCCGACATGAAGACTTATATGATCTACGTTTTCGATCTCCAATAAG TATGGGCCTGATGGATCATATTACCGTTTCCTTTTCGTATGGAGTGAACG TTGTACGTTTTCCTTCCGGGTGGTGTTTTCCTACCTTGTGACCACGGGCT GGATTTTGGCATCACCTAATGTGAGAACTCAATCAATTCAATCAATCAGA CGAGTACCAGTACAGTGTACCAGTACAGGATGCTAGGTGGTACCAGGTAC AGTATACCAGTACACAACAGTAGTTCTAACTACAATACTATAATATAGTA GAATAATACTTGATGCCGTCATAGTCGCGGAAAGCGGGAGGGAGGAGAGA AGACAGATTTTATTATATTATAGTTATGTATTCAGCCTGGGTGTGGAGAA TGACCGGGGGCTGACGCGAGTCGAACTTATCTTGGGAGGATGTTTTCGGG CGCGTACGGGAAAAGCGAACGTTGATTTTCTCTGTTCCAAGTAGGATTGG CAACACCCAATCGGCTGAACGTTAACAACATCCTCACCCATCCTACTCTA CTGTACTCTACTCTAGTATACTGTACTCTTAGACCAAATTCTCAGGCGCG AAGGGGGACAGGGAAAAAATGTATTTTTCCTGTTCAGCTTGACCACGACC AGGATTGGCAACCATGTCCAGTCAATCCATACTCTGTTTGCTATGATGAC TGGTTACCATACATAACATACCCTGGTAAAGTACAGTGGTTTACACAGAC GTGAGCTCTACATACGAGCACCAGTCACCACGAGTACTTCTTCTCGAGCA GTACAGCAGTAGGTGTACAGTAGAGCTACTTGTACAACTTTTGTTTCTGA TTTTTAAAATAATGATCTGTGTGTGCTCTCCCAGAATCTTAACCTTCACA AGGAATAATGAGGCAAGGATAGATAGCAAGTAGCTAGCTGGTGCACGAGA TCGCGCAACTACTAGGCAAAGGACATGAGCAACATGATCGCCCATTGATT TGTCTTTGTTGTAACGTCCTTCTCCCACCTTGCACCTGGCACCTGGCACT TCTTAATATTGATAGCAGTCAGCAAACACACACGTTCGTACATGTTTCGC CCTACCTAGCCTGTACTCATCAAGAGAGGAAATCGGATGCCTTAAGAGAA TGGTTGATGATGCCTTAAGTCGCCACTTTTTTTGTCGGCCGCTGCTATTA TTTTGTGATGGTACGTTAGGCACGGGAAGAGATGGAGTTCGCAGCTGAGA GCAAGGAGACGACCTACTTTGACGAGGAGGCGTCTGCTGCAAAGGAAGTA GTCGAACGTGAGGGCACGCGCTGGTCGCTCTCGGGGAAAAGCTGCGCTCG AAGCTCTGCGGTAGTACCGTAGCAGTGTTAAACCTATCTGGTACAAGTAC AATATTTTATTTACTATTAATAGCAATATTTATTGTCACTTTCTGTCTCC CTCTTCTGTCTAATATTATTATTACAAGTATGTGCCGTGCGGCGGTACGC CAAGAGATGACGCTTTTCTTGTCATTTGTAGACACCAGCTTCGAGTGTTG CTCGAAGACATCCTCCAGCAAATTACACACGCGGGAGTACCTCTATACTG TTGTGATTTGCCTATTAATAGTTAGTGCCTTGGTACATATCCAGTCAAGT ATCCAGGATCAGTCAATGCGCCAACTGACCATTTAATGGGGGAATCCTCG CACGTTCAACGAAAAGTCGTGCACTATCTGACAAGCGTCCTCGCGCGACT CTTGCTTGCGTCATGATGGCAGAGGCGGTCGGGCTCTTCGAGGAAGTTCT GGGATCGGTGGATGAGGCAAAACGAACCGAGATCATGAGACAGAGGTGAT GCGCTCCCAGCGGAAAAAGTGCGCGACGCTCATGACATGCATGCTGTTGT AAACCTATTCCTTCTATTACGTCGGGTTAGCCAGAGGAGACAAAAATATT GTCGGCATAGCGTTCTCGACATCATTCCTATACATCCAGTATTGTTTCAG GTGCTTGGCCCGGTCGTGCAGTAGATTGAACCTCCCCTCTATCTTTTTGC TCGCCGCCCACATCTCCGTGCTTTTATTTCTCAACAAAATTCTTGTGTAC AGCGGATTAAGAGTGGAGCAGTTGAAGGCCGAGCTCGATCAGTTGTTGGA ATCAGACGACCACTGATGGGTAACTGGAAATATCTCGGAAACCTAACCTG CTGGGGTTTCTTGGTTCCAATTTACGGCGGATGAGATCGATATTTCGCGA ATCTGTTCAGCCCGTAGGTAATGCTATGGCGCGCGAGAAATATTTTCTGC CGGCCTGTCCGGCGTATGTAAGCAGAACGCCGTAAAATAGACAAGACGCT GTTGGGGGCACTGACTTGGCGGCGTCAGTTCATGCTTGCTGCAAGGTTGA TAGAAATCGAATGAGGTTCTGGACGAGGCTTACTCGCTCTAATAGTGTTG TTTTCGGTGAAGTAACCTTCGATACAGATGGGTGTTAGTCGAGAGATATC CAGACATTTAATGAAGGATGCATGGCCGTGACTTTTTTACCTGTGGGAAA CATTGCGTGGACTTCGAAGCTGCCCAACAACGAACATTGGACGAGGAAAT GATTTCCTTAGAGGCCGTTACATTCTCTACGAGCTACTATTAATTATTAA TACTAGAGGGTTCTATC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig854:238972..244038+

>mRNA_A-nodosum_M_contig854.30.1 ID=mRNA_A-nodosum_M_contig854.30.1|Name=mRNA_A-nodosum_M_contig854.30.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=255bp|location=Sequence derived from alignment at A-nodosum_M_contig854:238972..244038+ (Ascophyllum nodosum dioecious)
ATGAACGAGTTCAATGATCTCTTCGTGGCGGCACGGGAAGAGATGGAGTT
CGCAGCTGAGAGCAAGGAGACGACCTACTTTGACGAGGAGGCGTCTGCTG
CAAAGGAAGTAGTCGAACAGGCGGTCGGGCTCTTCGAGGAAGTTCTGGGA
TCGGTGGATGAGGCAAAACGAACCGAGATCATGAGACAGAGCGGATTAAG
AGTGGAGCAGTTGAAGGCCGAGCTCGATCAGTTGTTGGAATCAGACGACC
ACTGA
back to top