mRNA_A-nodosum_M_contig854.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig854.17.1
Unique NamemRNA_A-nodosum_M_contig854.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig854.17.1 vs. uniprot
Match: D7FPJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPJ1_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 8.320e-145
Identity = 202/250 (80.80%), Postives = 226/250 (90.40%), Query Frame = 1
Query:    1 ANRGIGLEVTRQLLERTKGNVVAACRDPSSAEHLHELKATADFEGRLDIVRMDIKDQASVEAAADHMKNTFGRVDLLFNVAGVLGDGKNTPGPERSLRAMDRDWLRHTMEVNCIGPIMLVSALAPLLESPAKKGEKGARPPSVVVNFSARVGSIGDNSLGGWHSYRMSKSALNMATKGISVELKRRRVWTFSYHPGTTDTGLSKPFQANVKPEKLFTTSFTVQRVLDIVDSMSDELSGGFYAFDGSKIPW 750
            ANRGIGLEVTRQLLER KG VVAACRDPSSA  L  L   A  E RLD+V+MDI+DQ S+E AA+H+++T+GRVDLLFNVAGVLGDGKNTPGPERS+RAMDRDWLRHT+EVN IGP+MLV+AL PLLESPAKKG+ GA+PPSVVVNFSARVGSIGDN LGGWHSYRMSKSALNMATKGIS+EL+RRRVW FSYHPGTTDTGLS+PFQANVKPEKLFT  +TV +VL IVDSM+++LSGGFYAFDGS+I W
Sbjct:   46 ANRGIGLEVTRQLLERAKGTVVAACRDPSSAADLRALGRIAGNEKRLDMVKMDIEDQTSLETAAEHVRSTYGRVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVAALTPLLESPAKKGDDGAKPPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPDYTVSQVLGIVDSMTEDLSGGFYAFDGSRIVW 295          
BLAST of mRNA_A-nodosum_M_contig854.17.1 vs. uniprot
Match: A0A836C8A3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8A3_9STRA)

HSP 1 Score: 306 bits (783), Expect = 1.520e-101
Identity = 152/251 (60.56%), Postives = 193/251 (76.89%), Query Frame = 1
Query:    1 ANRGIGLEVTRQLLERTKGNVVAACRDPSSAEHLHELKATADFEGRLDIVRMDIKDQASVEAAADHMKNTF-GRVDLLFNVAGVLGDGKNTPGPERSLRAMDRDWLRHTMEVNCIGPIMLVSALAPLLESPAKKGEKGARPPSVVVNFSARVGSIGDNSLGGWHSYRMSKSALNMATKGISVELKRRRVWTFSYHPGTTDTGLSKPFQANVKPEKLFTTSFTVQRVLDIVDSMSDELSGGFYAFDGSKIPW 750
            A+RG+GLE+ +QL  RT+G+V+A+CR PS A  L  L  +    GR+ ++ +D+ DQASV+AAA H+     GR+D LFNVAG+LGDG+ TPGPERSL A+ RDWLRH+MEVN IGP+ML  A+AP L +    G+  A+ PSVVVNFSARVGSI DN LGGWHSYRMSKSALN ATK +++ELKR+  W F+YHPGTTDT LS+PFQANVKPEKLFT +FTV R+LD+ D+M  + +GGFY + G+ + W
Sbjct:   45 ASRGLGLELAKQLASRTQGHVIASCRQPSKALELQALAQS--HPGRMTVLELDVTDQASVDAAAAHVAALHNGRLDALFNVAGLLGDGRATPGPERSLGAIQRDWLRHSMEVNVIGPVMLAQAMAPHLRT---TGQGRAKTPSVVVNFSARVGSISDNRLGGWHSYRMSKSALNQATKCMALELKRQGTWAFAYHPGTTDTDLSRPFQANVKPEKLFTPAFTVGRMLDLCDNMDQQHTGGFYDYSGTFLLW 290          
BLAST of mRNA_A-nodosum_M_contig854.17.1 vs. uniprot
Match: A0A7S2UED2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UED2_9STRA)

HSP 1 Score: 278 bits (710), Expect = 6.790e-90
Identity = 130/255 (50.98%), Postives = 186/255 (72.94%), Query Frame = 1
Query:    1 ANRGIGLEVTRQLLERTKGNVVAACRDPSSAEHLHELKATADF-----EGRLDIVRMDIKDQASVEAAADHMKNTFGRVDLLFNVAGVLGDGKNTPGPERSLRAMDRDWLRHTMEVNCIGPIMLVSALAPLLESPAKKGEKGARPPSVVVNFSARVGSIGDNSLGGWHSYRMSKSALNMATKGISVELKRRRVWTFSYHPGTTDTGLSKPFQANVKPEKLFTTSFTVQRVLDIVDSMSDELSGGFYAFDGSKIPW 750
            A+RGIGL+  + L++RT+G +VA CR P +A  LH    T          R++++++DI+DQ S++  ++ ++N++ RVD+L NVAG+LGDG +TPGPERSL  +DRDW+  +M VN IGP+ML  AL+PL+ SP ++G++  R  +++ N SARVGSI DN LGGW+SYR SK+ALN AT+ +S ELKR+  WT + HPGTTDT LSKPFQ NV+ E+LF   FTV+++LD++DSM ++ SGG Y + G  IP+
Sbjct:   78 ASRGIGLQFVKSLIDRTEGKIVACCRSPENAHGLHTFLETMSLTDSLDRDRIEVLKLDIEDQTSIDELSNSIRNSYNRVDVLLNVAGLLGDGTSTPGPERSLAKLDRDWIEKSMAVNVIGPVMLSQALSPLMASP-QRGKEDKRATTLIANLSARVGSISDNGLGGWYSYRFSKAALNQATRTMSHELKRKGTWTIALHPGTTDTDLSKPFQRNVQAERLFPVEFTVEKLLDVMDSMEEQNSGGLYDWAGKAIPF 331          
BLAST of mRNA_A-nodosum_M_contig854.17.1 vs. uniprot
Match: A0A7S2HD28_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HD28_9STRA)

HSP 1 Score: 270 bits (690), Expect = 2.140e-86
Identity = 133/259 (51.35%), Postives = 182/259 (70.27%), Query Frame = 1
Query:    1 ANRGIGLEVTRQLLERTKGNVVAACRDPSSAEHLHE-LKATADFEGRLDIVRMDIKDQASVEAAADHMKNTFGRVDLLFNVAGVLGDGKNTPGPERSLRAMDRDWLRHTMEVNCIGPIMLVSALAPLLESPAKKGEKGA--------RPPSVVVNFSARVGSIGDNSLGGWHSYRMSKSALNMATKGISVELKRRRVWTFSYHPGTTDTGLSKPFQANVKPEKLFTTSFTVQRVLDIVDSMSDELSGGFYAFDGSKIPW 750
            ++RGIGL+  + L++R++G ++A CR P SA+ L+E L ++     R+  +++D++DQAS++AAA+ +K ++ RVD LFNVAG+LGDGK+ PGPERSL  +DRDW+  TM VN IGP+ML  ALAP++ S                 R  SV+VN SARVGSI DN LGGW+SYR SKSALN AT+ ++ ELKR+  WT + HPGTT+T LSKPFQ NV+  +LF   FTV R+LD+VD M D  SGG Y + G+ +P+
Sbjct:  108 SSRGIGLQFVKSLVDRSQGTILACCRSPDSADKLNEFLSSSPQASQRVKTIQLDVEDQASIDAAAEEIKTSYNRVDCLFNVAGILGDGKSDPGPERSLSKLDRDWVEKTMAVNVIGPVMLSQALAPMMISKXXXXXXXXXXXXXXXXRAQSVIVNLSARVGSISDNELGGWYSYRFSKSALNQATRTMAHELKRQGTWTVALHPGTTNTDLSKPFQRNVQEGRLFPVEFTVGRLLDVVDGMEDRHSGGLYDWSGTALPF 366          
BLAST of mRNA_A-nodosum_M_contig854.17.1 vs. uniprot
Match: A0A448YYN6_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYN6_9STRA)

HSP 1 Score: 269 bits (687), Expect = 6.850e-86
Identity = 132/263 (50.19%), Postives = 180/263 (68.44%), Query Frame = 1
Query:    1 ANRGIGLEVTRQLLERTKGNVVAACRDPSSAEHLHELKATADFEGR--LDIVRMDIKDQASVEAAADHMKNTFGRVDLLFNVAGVLGDGKNTPGPERSLRAMDRDWLRHTMEVNCIGPIMLVSALAPLLESPAKKGEKGA-----------RPPSVVVNFSARVGSIGDNSLGGWHSYRMSKSALNMATKGISVELKRRRVWTFSYHPGTTDTGLSKPFQANVKPEKLFTTSFTVQRVLDIVDSMSDELSGGFYAFDGSKIPW 750
            A+RGIGL+   +LL  TKG V+A CR P  A  L +L +T D + R  ++++++D+++Q S+E +A  +K  +GRVDLL NVAG+LGDGKNTPGPERS+  ++R+W+  T +VN IGP+ML   LAPL+    + G + A           R   VV N SARVGSI DN LGGW+SYRMSKSALN AT+ ++ ELKR+ VW  + HPGTTDT LSKPFQ NV+ ++LF   FTV  +++++DSM +  SGG Y + G  IP+
Sbjct:  108 ASRGIGLQFVSKLLSDTKGRVIAGCRSPDDAPKLQDLLSTLDKKSRNRVEVIKLDVENQDSIELSAAEIKVQYGRVDLLLNVAGILGDGKNTPGPERSVAKIEREWMEKTFQVNVIGPVMLAKELAPLMTQARRTGRRKADSSDETLSEKQRAVGVVANLSARVGSISDNGLGGWYSYRMSKSALNQATRTLANELKRKSVWCIALHPGTTDTDLSKPFQKNVQKDRLFPVEFTVDSLMNVIDSMEEHNSGGLYDWAGKAIPF 370          
BLAST of mRNA_A-nodosum_M_contig854.17.1 vs. uniprot
Match: A0A7S2YRX8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YRX8_9STRA)

HSP 1 Score: 268 bits (684), Expect = 2.970e-85
Identity = 136/256 (53.12%), Postives = 181/256 (70.70%), Query Frame = 1
Query:    1 ANRGIGLEVTRQLLERTKGNVVAACRDPSSAEHLHELKATADFEGRLDIVRMDIKDQASVEAAADHMKNTFGRVDLLFNVAGVLGDG-KNTPGPERSLRAMDRDWLRHTMEVNCIGPIMLVSALAPLLESPAKK--GEKG-----ARPPSVVVNFSARVGSIGDNSLGGWHSYRMSKSALNMATKGISVELKRRRVWTFSYHPGTTDTGLSKPFQANVKPEKLFTTSFTVQRVLDIVDSMSDELSGGFYAFDGSKI 744
            A+RGIGL+  + LLERTKG +VA CR PS+A  L EL+ +     R+DIV +D+++Q+++E A   ++  + RVD LFNVAG+LGDG K TPGPERS+  MDR WL  TM VN IGP+ML   L+ ++ +  K+   ++G      RP +VVVN SARVGSI DN LGGW+SYRMSKSALN AT+ +++ELKR+  W  + HPGTT+T LS+PFQANVK   LF   FTV ++LD+VD + D+ SGGFY + G  +
Sbjct:  127 ASRGIGLQFVKSLLERTKGTIVACCRSPSAATELIELRESMSSSKRIDIVALDLEEQSTIEKAGSFLREKYDRVDGLFNVAGLLGDGGKTTPGPERSISKMDRGWLEKTMAVNVIGPVMLTKELSSMIMTRRKRQRSKEGDIADTERPIAVVVNLSARVGSIADNGLGGWYSYRMSKSALNQATRTMALELKRQSAWAVALHPGTTNTDLSRPFQANVKEGSLFPVEFTVGQLLDLVDRLEDKHSGGFYDWAGQSL 382          
BLAST of mRNA_A-nodosum_M_contig854.17.1 vs. uniprot
Match: A0A7S2F9C9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9C9_9STRA)

HSP 1 Score: 260 bits (665), Expect = 1.670e-84
Identity = 130/232 (56.03%), Postives = 166/232 (71.55%), Query Frame = 1
Query:   67 AACRDPSSAEHLHELKATADFEGRLDIVRMDIKDQASVEAAADHMKNTFGRVDLLFNVAGVLGDGKNTPGPERSLRAMDRDWLRHTMEVNCIGPIMLVSALAPLLESPAKKGEKGA----RPPSVVVNFSARVGSIGDNSLGGWHSYRMSKSALNMATKGISVELKRRRVWTFSYHPGTTDTGLSKPFQANVKPEKLFTTSFTVQRVLDIVDSMSDELSGGFYAFDGSKIPW 750
            A CR P++A  LH L  T+   GRL++ ++D+ DQASVEA A  +     R D+L NVAG+L D  +   PER+L+++DR+W   T+EVN +GP+ML  AL PLL S  +   K A    RPPSVV N SARVGSIGDN +GGW+SYR+SK+ALNMATK +S+ELKR  VW  + HPGTTDTGLSKPFQ NVKPEKLFTT FTV ++L +V+SM    +G F+A+DG +I W
Sbjct:    1 AGCRSPAAATDLHALAETSS--GRLEVAQLDVGDQASVEAFAASVAEKHQRCDMLLNVAGILHDEAHPAAPERALKSVDREWFSKTLEVNTVGPLMLAQALEPLLRSTGRGAAKTASGETRPPSVVANLSARVGSIGDNGMGGWYSYRISKAALNMATKNMSLELKRSGVWCVTLHPGTTDTGLSKPFQKNVKPEKLFTTKFTVSQLLGVVESMDVSHTGSFFAWDGQEIEW 230          
BLAST of mRNA_A-nodosum_M_contig854.17.1 vs. uniprot
Match: B7FYH7_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYH7_PHATC)

HSP 1 Score: 259 bits (663), Expect = 9.070e-84
Identity = 126/252 (50.00%), Postives = 172/252 (68.25%), Query Frame = 1
Query:    1 ANRGIGLEVTRQLLERTKGNVVAACRDPSSAEHLHELKATADFEGRLDIVRMDIKDQASVEAAADHMKNTFGRVDLLFNVAGVLGDGKNTPGPERSLRAMDRDWLRHTMEVNCIGPIMLVSALAPLLESPAKK----GEKGARPPSVVVNFSARVGSIGDNSLGGWHSYRMSKSALNMATKGISVELKRRRVWTFSYHPGTTDTGLSKPFQANVKPEKLFTTSFTVQRVLDIVDSMSDELSGGFYAFDGSKI 744
            A+RGIGL+  + L+ R +G++VA CR P  AE L E  AT +   R+ IV +D++DQ S+E A   +K  FGRVD+L NVAG+LGD K TPGPERSL  ++RDW   T+ +N IGP+ML   L+PL+    K+     +   R  +V+ + SARVGSI DN LGGW+SYRMSKSALN AT+ +++E+KR   W  + HPGTTDT LSKPFQ+NVK   LF   FT +++++++DSM++  SGG Y + G  I
Sbjct:    7 ASRGIGLQFVKTLILRARGSIVACCRSPEKAELLQEFIATLEDPRRIRIVSLDLEDQTSIERAGAEIKEMFGRVDMLLNVAGLLGDAKTTPGPERSLAKVERDWFEKTLAINTIGPVMLSKELSPLMMQRRKRKSSDNDTETRAVAVIASLSARVGSISDNGLGGWYSYRMSKSALNQATRTMALEMKRCSTWCIALHPGTTDTDLSKPFQSNVKDGSLFPVDFTTEKLMNVIDSMTENNSGGLYDWAGQAI 258          
BLAST of mRNA_A-nodosum_M_contig854.17.1 vs. uniprot
Match: A0A7S3PXF5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXF5_9STRA)

HSP 1 Score: 259 bits (662), Expect = 2.160e-82
Identity = 128/252 (50.79%), Postives = 176/252 (69.84%), Query Frame = 1
Query:    1 ANRGIGLEVTRQLLERTKGNVVAACRDPSSAEHLHE-LKATADFEGRLDIVR-MDIKDQASVEAAADHMKNTFGRVDLLFNVAGVLGDGKNTPGPERSLRAMDRDWLRHTMEVNCIGPIMLVSALAPLLESPAKKGEKGARPPSVVVNFSARVGSIGDNSLGGWHSYRMSKSALNMATKGISVELKRRRVWTFSYHPGTTDTGLSKPFQANVKPEKLFTTSFTVQRVLDIVDSMSDELSGGFYAFDGSKIPW 750
            A+RGIGL++ + L  RTKG +VA CR P  A+HLH  +K+    E R  +++ +D+++Q ++E     ++++  RVD+L+NVAG+LGDGKNTPGPERSLR++DR+W   +M VN IGP+ L   LAP++ S  KK ++G    SV+VN SARVGSI DN LGGW SYR SK+ALN A + ++ ELKR+       HPGTTDTGLSKPFQ NVK E+LF   FT  R++D VD M +  +GG Y + G+ +P+
Sbjct:  101 ASRGIGLQILKDLATRTKGTIVACCRAPKEADHLHSFIKSLPTNESRRILLKSLDLEEQETIETLGKEIEDSHKRVDVLYNVAGILGDGKNTPGPERSLRSLDRNWAMKSMNVNYIGPVSLSQVLAPMMRSTLKKDDRGK---SVIVNLSARVGSISDNGLGGWISYRSSKAALNQANRTMAHELKRQGTLCICLHPGTTDTGLSKPFQGNVKKERLFPVEFTASRMIDAVDCMDELNTGGLYDWSGTALPF 349          
BLAST of mRNA_A-nodosum_M_contig854.17.1 vs. uniprot
Match: A0A7S4MLR2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MLR2_9STRA)

HSP 1 Score: 259 bits (662), Expect = 4.590e-82
Identity = 130/267 (48.69%), Postives = 181/267 (67.79%), Query Frame = 1
Query:    1 ANRGIGLEVTRQLLERTKGNVVAACRDPSSAEHLHELKAT--ADFEGRLDIVRMDIKDQASVEAAADHMKNTFGRVDLLFNVAGVLGDG-KNTPGPERSLRAMDRDWLRHTMEVNCIGPIMLVSALAPLLESPAKKGEKGAR--------------PPSVVVNFSARVGSIGDNSLGGWHSYRMSKSALNMATKGISVELKRRRVWTFSYHPGTTDTGLSKPFQANVKPEKLFTTSFTVQRVLDIVDSMSDELSGGFYAFDGSKIPW 750
            ANRGIGL+  + +L+R++G + A CR P  AE L  +KA+  A+   R+ +VR+D++DQ S+E AAD ++  +GRVD L NVAG+LGDG ++TPGPERSL  +DR+W   ++ VN IGP+ML  ALAPL+ +   +G++  R               PS+V N SARVGSI DN LGGW+SYR+SK+ALN AT+ ++ ELKR+     + HPGTTDT LS PFQ NV   +LF   FTV+++LD +D++ DE SGG Y + G  +P+
Sbjct:  108 ANRGIGLQFVKAVLDRSRGRIAACCRSPRDAEALEAVKASLPAEERERIRLVRLDVEDQMSIEGAADEIRTEYGRVDALLNVAGILGDGGESTPGPERSLGKIDREWTAKSLAVNVIGPVMLAQALAPLMRTKGGRGQRRTRRKTSDEGEEKEEQRAPSIVANLSARVGSISDNELGGWYSYRLSKAALNQATRTMAHELKRQGTRAVALHPGTTDTDLSAPFQRNVAEGRLFPVEFTVRQLLDCIDNLDDEHSGGLYDWSGRALPF 374          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig854.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPJ1_ECTSI8.320e-14580.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C8A3_9STRA1.520e-10160.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UED2_9STRA6.790e-9050.98Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2HD28_9STRA2.140e-8651.35Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A448YYN6_9STRA6.850e-8650.19Uncharacterized protein n=2 Tax=Pseudo-nitzschia m... [more]
A0A7S2YRX8_9STRA2.970e-8553.13Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2F9C9_9STRA1.670e-8456.03Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
B7FYH7_PHATC9.070e-8450.00Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A7S3PXF5_9STRA2.160e-8250.79Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4MLR2_9STRA4.590e-8248.69Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig854contigA-nodosum_M_contig854:169759..171298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPJ1
PFAMsadh_short,adh_short_C2
Model size758
Max annot lvl2759|Eukaryota
KEGG koko:K19877
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010033,GO:0016491,GO:0042221,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0110095,GO:0110096,GO:1901700,GO:1901701,GO:1990748
Exons3
Evalue1.27e-120
EggNOG OGsCOG1028@1|root,KOG1611@2759|Eukaryota
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-12_000780.1
Descriptioncellular detoxification of aldehyde
Cds size600
COG categoryIQ
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870235.9023108-UTR-A-nodosum_M_contig854:169758..1698131680870235.9023108-UTR-A-nodosum_M_contig854:169758..169813Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig854 169759..169813 +
1680870235.9244266-UTR-A-nodosum_M_contig854:170197..1702951680870235.9244266-UTR-A-nodosum_M_contig854:170197..170295Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig854 170198..170295 +
1680870235.9612882-UTR-A-nodosum_M_contig854:171293..1712981680870235.9612882-UTR-A-nodosum_M_contig854:171293..171298Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig854 171294..171298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870235.9348938-CDS-A-nodosum_M_contig854:170295..1703581680870235.9348938-CDS-A-nodosum_M_contig854:170295..170358Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig854 170296..170358 +
1680870235.9508636-CDS-A-nodosum_M_contig854:170756..1712931680870235.9508636-CDS-A-nodosum_M_contig854:170756..171293Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig854 170757..171293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig854.17.1prot_A-nodosum_M_contig854.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig854 170296..171293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig854.17.1

>prot_A-nodosum_M_contig854.17.1 ID=prot_A-nodosum_M_contig854.17.1|Name=mRNA_A-nodosum_M_contig854.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=200bp
MDIKDQASVEAAADHMKNTFGRVDLLFNVAGVLGDGKNTPGPERSLRAMD
RDWLRHTMEVNCIGPIMLVSALAPLLESPAKKGEKGARPPSVVVNFSARV
GSIGDNSLGGWHSYRMSKSALNMATKGISVELKRRRVWTFSYHPGTTDTG
LSKPFQANVKPEKLFTTSFTVQRVLDIVDSMSDELSGGFYAFDGSKIPW*
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mRNA from alignment at A-nodosum_M_contig854:169759..171298+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig854.17.1 ID=mRNA_A-nodosum_M_contig854.17.1|Name=mRNA_A-nodosum_M_contig854.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1540bp|location=Sequence derived from alignment at A-nodosum_M_contig854:169759..171298+ (Ascophyllum nodosum dioecious)
GCCAATCGGGGGATCGGACTGGAAGTGACCCGGCAGCTACTGGAGAGGAC GAAAGGTGCAGCAGCCACTAACTACAAAAAAACAGTTCTCGTACGAGTAT ATGTAGAAAACAAAAGTACTGTTGTATGGTACAGAACATGTACCGTTTGT ACTAAAATAATCTTTACACAAATCCAGTATGTACCAAACTAGAGCCAAGG TCGAGGTAATGACGCACGCCGGAGCGTTCGTTGGTTATCTTGTGTTGTCT TGACAATCGCCTCTCGGCAACTGAAGTAAATCGCGTTTCCCATCAAAAGC GTAATACGTCATCAGCTACAAACAACCTGGGGACGGCGAACATACTTCAG AGTCTAGTCATCTAAAGTGCCATAAAAGTACTGTCTTGTAAGTTGATTCC AGCCTGCCCTATCTGTTCACGCATTCTTTTGACGCGCAGGGAATGTGGTG GCCGCATGCCGAGACCCATCTTCCGCCGAGCATTTACACGAGCTTAAAGC GACGGCCGATTTCGAGGGTAGGCTTGACATTGTCCGAATGGATATCAAAG ATCAGGCGTCCGTGGAGGCCGCAGCGGATCACATGAAGAACACATTTGGG GTGAGCAAGATGCGCACATATCTGTGTTGCCTCCTTGCTTTGTACGTATA GATGTCGTACCGGTATCGAGGAAATCGATACAGTACATCCTAATCCAAAA GTCATCCTCGGTCGCCTCCAATTTTCCCATAAGGCGAACTCCGCGAAAGT ACGACAGCCGTAAACTACAGTTCGTATCTACTCGTAGTCTCGCTTCAGTA ACAAAACGACGCCGAAACATCAAATAATTGAAGCAAAGACAGGGAGGGTT ATGTGACCGACGTGTCCCCCCTTCGATTCATCTGCGATACGAATACACCA GCAACACAATACAGCAGAGCCTAAGCTCTCGTTCAGCGCTTCAAAGATTG CAGACACCATCGCTTCTGCCCGTGTCCATTTCCGCACCCCTCCCACAGCG TGTTGACCTCTTATTCAACGTAGCCGGAGTGCTCGGGGACGGGAAAAATA CCCCTGGTCCGGAGCGATCCCTTCGAGCGATGGACCGGGACTGGCTGCGA CACACGATGGAGGTCAACTGCATAGGTCCAATTATGCTTGTTTCGGCGCT GGCTCCTCTGCTGGAAAGTCCGGCGAAAAAGGGCGAAAAGGGGGCAAGGC CTCCGTCCGTTGTTGTAAATTTTAGTGCTCGTGTCGGCTCAATCGGAGAC AACAGTCTTGGCGGGTGGCACAGCTACCGAATGTCAAAGTCTGCCCTGAA TATGGCCACCAAGGGCATTTCTGTAGAGCTCAAACGTCGAAGGGTTTGGA CTTTCTCGTATCATCCAGGCACCACGGACACCGGCTTATCGAAGCCTTTT CAAGCCAACGTCAAGCCGGAGAAACTGTTCACGACTTCCTTCACGGTGCA AAGGGTATTGGACATCGTAGACTCCATGTCGGATGAGTTATCAGGGGGGT TTTACGCCTTTGATGGCAGTAAAATCCCGTGGTGACATGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig854:169759..171298+

>mRNA_A-nodosum_M_contig854.17.1 ID=mRNA_A-nodosum_M_contig854.17.1|Name=mRNA_A-nodosum_M_contig854.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at A-nodosum_M_contig854:169759..171298+ (Ascophyllum nodosum dioecious)
ATGGATATCAAAGATCAGGCGTCCGTGGAGGCCGCAGCGGATCACATGAA
GAACACATTTGGGCGTGTTGACCTCTTATTCAACGTAGCCGGAGTGCTCG
GGGACGGGAAAAATACCCCTGGTCCGGAGCGATCCCTTCGAGCGATGGAC
CGGGACTGGCTGCGACACACGATGGAGGTCAACTGCATAGGTCCAATTAT
GCTTGTTTCGGCGCTGGCTCCTCTGCTGGAAAGTCCGGCGAAAAAGGGCG
AAAAGGGGGCAAGGCCTCCGTCCGTTGTTGTAAATTTTAGTGCTCGTGTC
GGCTCAATCGGAGACAACAGTCTTGGCGGGTGGCACAGCTACCGAATGTC
AAAGTCTGCCCTGAATATGGCCACCAAGGGCATTTCTGTAGAGCTCAAAC
GTCGAAGGGTTTGGACTTTCTCGTATCATCCAGGCACCACGGACACCGGC
TTATCGAAGCCTTTTCAAGCCAACGTCAAGCCGGAGAAACTGTTCACGAC
TTCCTTCACGGTGCAAAGGGTATTGGACATCGTAGACTCCATGTCGGATG
AGTTATCAGGGGGGTTTTACGCCTTTGATGGCAGTAAAATCCCGTGGTGA
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