prot_A-nodosum_M_contig843.3.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig843.3.2
Unique Nameprot_A-nodosum_M_contig843.3.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length1983
Homology
BLAST of mRNA_A-nodosum_M_contig843.3.2 vs. uniprot
Match: A0A6H5KFG5_9PHAE (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFG5_9PHAE)

HSP 1 Score: 818 bits (2114), Expect = 6.270e-260
Identity = 777/1818 (42.74%), Postives = 947/1818 (52.09%), Query Frame = 0
Query:  249 LLLAMAMAAG--GPGDGVLTRDASMIEDYILLMSDEAVAEDEAEGMAGQDLMAD------APFRRQ--PGLSLSEALDRAETASARPPRPANLLDLAALIRPLRLGPRTKAREGQSASGLKKGKGKEKAHALPTPPGEASGTKRAVHDGEAG---QMATARSTKRRRMDPNAILCPFELNGVCNDDDCRYQHAENYLPLPASPPSTPRPIPLQAAPAAVARGAPAKGPDKNDSGKSKSGGNEAXXXXXXXXXXXAVPVLPVPAAPNGSRGGAAPRWKLPAINFE-VGTRDEASRRGKVSRAKRPRPNVEVEVPAEETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGDGGVDVVGARRRFSSDPEFEDGEDFLALETGSTGTSSGGSDDASNNDAAIDGTTTLPDGASPASLAKAFAQAALGSSARRGSXXXXXRARGRRTGR---YYNEREEGIFDATANA-LTEEQVAALEARLEKEPCDSVEGWLLVAIHRLPRAGNSTRAMLNTIGAVARGSSGPLGNVDHAALKPALRALVRGLERG---QAEALWILYLRLFAILPGKGEEALSMAEHAVENYPTSRRVWRLYLSMRRKFRRRSLPDEIHAYRKNLEMLLQVGPVASEGAPMATQTTADSVTSQDGGETESGAATAHPQATSVQETADSGAKSDKRDRATVGMVAYLVLERSSMLAEAGYSLQAAADALDALG---ESKVLRGWDTATEDESGGKSLLRAPSESIQSPGLGDLPTSGSGNGIGTHRSGGRGVHG----------RLPEGVSEVLRQAPRETRCLLWLAALHLLVMGVFPRPVLGLAERDGGD-------PECGSPGAGSFLWSKEWLSPESAAGIRLSASAELSDAATKVFMSALQDAGLLPAEDGRGGGWAPPMRVRDALLPSAAEAKAARAGGMAPEPSALAGPSLALALNWLAFCCRKGRGRDNGVRSVALACCRRFQLSRPDDPSMLEHLLVEHDVSRLRSLEDVYSEISSAFNEGGVATEAFRGRSVDFARKGY---CGSRNGAFSS------PSVHRLDALYCFFRFAEVRLGATASKAHVDLSPSTNGLASVESETVNATKAAPAIPAAAEAERDMGSRCD---FLREALVGIWLPTRASNDHAGAG-----TKGTLNRWLLEDDVESLHLALEGAKASLFRWADGFSRDGGGGGNAGSGDSGGASKEKAAINFTSNARRSGWEDDQSAVRQLSTIFLALWVLGGPSEATHTLDHILSAESFAMMPPERRRLAWLQRLEAAIFMSSEQAVAAQ----DSLKGVREVVLRALADPRTECR----PDCATLADVIASALDESANGGSHEYQLSSGGRAG---------------ASSSAVSFAYDVLMLYAKHFREV-RGGVDWSVVAEALGNSGDEASAKQGTSFASLGFLAGATSSAACVRALLFWVNLADEPGPVDGSVARAGGVSALRSSARPYAERALARHRYDSSLAGIVAALETSMGRPDRAQEILEAALGYNGLCSALWEQRIALEAAFGAGSKDRAKATSSAAASSKVLLRLRCTSDRGRMECERSDVSSDGSSRQTSVLSARVAGRILATVSNASSRQETKSLSLQGSLYLL-GNTESMQFPPFRTPREVPRSVFLLTGLVSLSLASNGLTELXXXXXXXXXXXXXXXXXXXXXXXXRSLLKLSGSLRLLRLAGNRFSSPLARSPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSF-QRAPPRLTDALPHLEQLILP 1982
            LLLAMA+  G    GD +LTRDA  I +YI LMS E + E+      G+D   +      A  RR+  PGLSL+EALD+AE  +ARP R  NLL LAA IRP+                                                      A A   KRRR+D NAI+CPFELNGVCNDDDCRYQH + YLP P +P ++  PI   AA    A   PAK         S   G                  L   AA    R  A  + +LPAI+F     RD  +R  +  R    +P+   + P  ET               XXXXXXXXXXXX                                                        D V +               FLAL T     + G   +AS+      GT   P+ ASPA+LAKAFA AA G+ A  G       A G   GR   YY E  +G     A+A L ++Q++ALEA+L +     VEGWLL+A+H+LPRAG S +A+LNTI  VA G+SGP+G+VD AA+K ALR  VR LER    QAE LW+LYLRLFA LPGK ++AL MAE+A+E +PTSRR+WRLY SM +     SLP+++  YR+ +E LL + P A++        +                                         A V M+ YLVLER S+LAEAGY LQAAA+ LD+LG   E + L GWD    D  G ++LLR           G     G GNG  T   GG    G          RLP GV+  L+ APR++RC+LWL ALHLLVMGVFPR  L LAE DGG           G   A   LW  EWLSP+S+A +RLSAS +L DA  K FM+AL D GLLP    +G  WAP ++ RDALL SAAEAKAARAGGMAP+ SAL GP L LALNWLAFC R+GR      R +A ACCRRFQLSRPD P++LEH L+EH VS+ R+L D Y EIS AF+  GVA  A R R     +       G+R     S      PS  R+ A+Y F RF E RL A  S                ESE+ N              + D G+  D    LR+ALVG+W    +              +    RWL E+  ES+  ALEGAKASLFRWADG S         G  D+ G + E                      RQLSTI  +LWVLGG S A  +LDHILSAESF+ +  ER+RLAWLQRLEAAI +S++Q    Q    D+++GVREV LRALAD RTE R     +  +LA  +A+ LD      +      SGG+ G               +S+S+ SFA DVL +YA HFRE  RGGVDW V AEALG          G S A                      +  DE G    + +   G SAL+++ARPY E ALA +  D++L G VAAL  + G PD AQ +LEAAL  +  C+ LWEQR+ALEA FG+GS +RA AT++AAA S+V+LRLRC    G               +  S L AR AGRI   +S+ +SR+E KS SLQ +L    G++  +         EVPRS+FL+T L SLSLA NGL   XXXXXXXXXXXXXXXXXXXXXXXX    +LSG+LRLLR AGNR  SPL+ +  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  F +RAP  L+DALP LE+L LP
Sbjct:   62 LLLAMAIGGGMVPGGDDLLTRDAGTIAEYIRLMSFEMLGEESQ----GRDRPVERWHQVGASIRRRLVPGLSLTEALDKAEATAARPARLPNLLALAAAIRPVDSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEPRAEAPGAKRRRVDANAIMCPFELNGVCNDDDCRYQHLDVYLP-PLNPGTSSAPISASAA----ANVQPAKSSASGPGSTSPVPGP-----------------LAAAAARTDERASALGQHRLPAIDFTGAAKRDAVARARENGRRGVVKPSSSRQ-PTSETGGVTPTAAEGGTADQXXXXXXXXXXXXGELEE--------------------------------------------------ADAVDSGEXXXXXXXXXXXXXFLALPTERAENNGGDGGEASS------GTAAAPEQASPAALAKAFALAASGALASGGRGNVVRGAGGSGVGREERYYLEGGDGKTQGAASAALPDDQLSALEAKLNEGASCDVEGWLLLAMHQLPRAGGSAKAVLNTISDVACGASGPMGSVDQAAVKSALRTFVRPLERADGAQAEVLWLLYLRLFAFLPGKSDDALGMAEYALEKFPTSRRIWRLYHSMLQTSPGWSLPEDVSCYRRQIEALLLLQPRAADMRASPQDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEVKMIVYLVLERCSLLAEAGYKLQAAAEVLDSLGALAEGQPLWGWDA--RDGQGRRTLLRTFEG-------GGHEREGEGNGA-TRXXGGANAGGSTEASDDNGQRLPAGVAAALKHAPRDSRCVLWLTALHLLVMGVFPRHALTLAENDGGGLGGSNDTTAAGGDLAALLLWPTEWLSPKSSAILRLSASPDLQDATLKTFMTALSDVGLLPPPRSQGC-WAPAIKDRDALLSSAAEAKAARAGGMAPDASALEGPPLVLALNWLAFCLRRGRVDARQGRMMAFACCRRFQLSRPDQPALLEHFLLEHAVSKTRTLGDTYHEISRAFDADGVAAGALRERRDGEGKSASLNPAGARRRDEQSVNLVPPPSGERIQAVYAFLRFVESRLEAARS----------------ESESAN--------------DADRGALEDARRVLRDALVGMWTGVSSXXXXXXXXXXXXXARSESYRWLEEEGGESVRQALEGAKASLFRWADGGS---------GGCDAPGGNGE----------------------RQLSTIVFSLWVLGGASAAIGSLDHILSAESFSGVSAERKRLAWLQRLEAAIILSTQQRRKQQASGVDAMQGVREVALRALADHRTERRCVLPAEYPSLAHFVAATLDRPP--ATESPVRDSGGQPGKSISRDPPFASLATDSSASSSSFACDVLTVYANHFREAKRGGVDWVVAAEALG----------GVSAAXXXXXXXXXXXXXXXXXXXXXDH--DESGAATAA-SSVDGASALKANARPYVEMALAMNPADTALCGAVAALWAATGSPDLAQRVLEAALRAHPYCAELWEQRVALEAGFGSGSTERAGATAAAAAGSRVMLRLRCGGKLG--------------GQTPSGLQARTAGRIATAISHPTSRREIKSFSLQAALRAPPGSSAPVAAAGAMATIEVPRSIFLMTSLTSLSLAFNGLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSGTLRLLRAAGNRLQSPLSATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFSERAPAGLSDALPFLEELTLP 1695          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig843.3.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFG5_9PHAE6.270e-26042.74C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 115..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 621..649
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 353..369
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..207
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1008..1032
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 899..947
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 522..687
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 902..940
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 659..687
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 522..577
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 434..486
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 343..400
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 995..1042
NoneNo IPR availablePANTHERPTHR48051FAMILY NOT NAMEDcoord: 1844..1980
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 1825..1981
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 1948..1972
e-value: 390.0
score: 0.2
coord: 1875..1898
e-value: 1.1
score: 18.2
coord: 1852..1874
e-value: 14.0
score: 12.0
coord: 1924..1947
e-value: 0.45
score: 19.6
IPR019607Putative zinc-finger domainPFAMPF10650zf-C3H1coord: 409..427
e-value: 1.6E-8
score: 34.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 1833..1980
e-value: 6.9E-24
score: 85.7
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 404..430
score: 10.107931
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 1926..1947
score: 7.55024

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig843contigA-nodosum_M_contig843:63950..77831 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig843.3.2mRNA_A-nodosum_M_contig843.3.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig843 63222..77865 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig843.3.2 ID=prot_A-nodosum_M_contig843.3.2|Name=mRNA_A-nodosum_M_contig843.3.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1983bp
MAQSWHGGRGTGRGRIARWASKNVSRGHTTRPPTNVWTPAIAAAAAAASK
LPDPRNNVALSASVAPANSPQVSAGATAAIVARNVESTDVPPAVKARISI
RKAAETVEASSEQSAAEMDIHLQNAEKKLALVKAQEEEVRAIVDAHLERE
AALKTLLEELYREQQLQQPPTQQQQQQDESCESEETVTSSPTAKRKVASN
SSGERVISTGPRAGASWEGSTVAAAGAAAAAAAPSNSGGGVGGGGNSGLL
LAMAMAAGGPGDGVLTRDASMIEDYILLMSDEAVAEDEAEGMAGQDLMAD
APFRRQPGLSLSEALDRAETASARPPRPANLLDLAALIRPLRLGPRTKAR
EGQSASGLKKGKGKEKAHALPTPPGEASGTKRAVHDGEAGQMATARSTKR
RRMDPNAILCPFELNGVCNDDDCRYQHAENYLPLPASPPSTPRPIPLQAA
PAAVARGAPAKGPDKNDSGKSKSGGNEAAATPPTTSAAAAVPVLPVPAAP
NGSRGGAAPRWKLPAINFEVGTRDEASRRGKVSRAKRPRPNVEVEVPAEE
TKVSRAKRPRPNVEVEVLAEETEPITKRPRVSGGGAESLTVESGERAKPP
GSSGSDFESTGMEMEEEAGVGMDEGSDRDGDGGVDVVGARRRFSSDPEFE
DGEDFLALETGSTGTSSGGSDDASNNDAAIDGTTTLPDGASPASLAKAFA
QAALGSSARRGSGGGGGRARGRRTGRYYNEREEGIFDATANALTEEQVAA
LEARLEKEPCDSVEGWLLVAIHRLPRAGNSTRAMLNTIGAVARGSSGPLG
NVDHAALKPALRALVRGLERGQAEALWILYLRLFAILPGKGEEALSMAEH
AVENYPTSRRVWRLYLSMRRKFRRRSLPDEIHAYRKNLEMLLQVGPVASE
GAPMATQTTADSVTSQDGGETESGAATAHPQATSVQETADSGAKSDKRDR
ATVGMVAYLVLERSSMLAEAGYSLQAAADALDALGESKVLRGWDTATEDE
SGGKSLLRAPSESIQSPGLGDLPTSGSGNGIGTHRSGGRGVHGRLPEGVS
EVLRQAPRETRCLLWLAALHLLVMGVFPRPVLGLAERDGGDPECGSPGAG
SFLWSKEWLSPESAAGIRLSASAELSDAATKVFMSALQDAGLLPAEDGRG
GGWAPPMRVRDALLPSAAEAKAARAGGMAPEPSALAGPSLALALNWLAFC
CRKGRGRDNGVRSVALACCRRFQLSRPDDPSMLEHLLVEHDVSRLRSLED
VYSEISSAFNEGGVATEAFRGRSVDFARKGYCGSRNGAFSSPSVHRLDAL
YCFFRFAEVRLGATASKAHVDLSPSTNGLASVESETVNATKAAPAIPAAA
EAERDMGSRCDFLREALVGIWLPTRASNDHAGAGTKGTLNRWLLEDDVES
LHLALEGAKASLFRWADGFSRDGGGGGNAGSGDSGGASKEKAAINFTSNA
RRSGWEDDQSAVRQLSTIFLALWVLGGPSEATHTLDHILSAESFAMMPPE
RRRLAWLQRLEAAIFMSSEQAVAAQDSLKGVREVVLRALADPRTECRPDC
ATLADVIASALDESANGGSHEYQLSSGGRAGASSSAVSFAYDVLMLYAKH
FREVRGGVDWSVVAEALGNSGDEASAKQGTSFASLGFLAGATSSAACVRA
LLFWVNLADEPGPVDGSVARAGGVSALRSSARPYAERALARHRYDSSLAG
IVAALETSMGRPDRAQEILEAALGYNGLCSALWEQRIALEAAFGAGSKDR
AKATSSAAASSKVLLRLRCTSDRGRMECERSDVSSDGSSRQTSVLSARVA
GRILATVSNASSRQETKSLSLQGSLYLLGNTESMQFPPFRTPREVPRSVF
LLTGLVSLSLASNGLTELPSAVGRLLSLRSLDASDNALTALPRSLLKLSG
SLRLLRLAGNRFSSPLARSPLGDLVSLRVLDLGNNALSRFPQEVVLTMKE
LRTLNLAGNHSFQRAPPRLTDALPHLEQLILP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR019607Putative_zinc-finger_domain
IPR032675LRR_dom_sf
IPR000571Znf_CCCH
IPR001611Leu-rich_rpt