mRNA_A-nodosum_M_contig841.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig841.6.1
Unique NamemRNA_A-nodosum_M_contig841.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig841.6.1 vs. uniprot
Match: D7G4Q6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q6_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 2.730e-27
Identity = 185/341 (54.25%), Postives = 213/341 (62.46%), Query Frame = 1 
Query:    1 PPVPAELQRFLEQHRPPQPET-----ANGSTSPKRPPS--RVSFKSGLVYEGE------GELRRHDVVPHGWGRVTLPEGAAYEGEWLGGRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GVFVDAARGGERFEGSWERGVRSGGGRLVQGWAE---RGQGGENLADASSSASADGFEDSAWYSGNFKDGLPHGEGAMGYGLATFCGHVERGEWTGGGGVLDLGD----GRGSFEGTFSNGLPRGSGRWRWEESGVERDCTFEEGYASNIW 954
            PP+P  L  FLE HRP          + GS +     S  RV F  GL YEG+      GE R    VPHGWG +T P+   Y+G W GG VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     GVFVD A G ERF G+W  G+RSG G LVQG  E   R +GGE+  + +     +   + AWYSGNF+ GLPHG+G M Y  ATFC              +D G+      G FEG++ +G+P GSGRW +++SGV  DCTFE+GY+  IW
Sbjct:   75 PPIPLILHLFLENHRPRDVSALPSGGSRGSNAGDGSSSVHRVWFTGGLAYEGQLLRREGGEKR----VPHGWGNLTFPDKGFYQGCWHGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGSHTRSYDGDWENDLPHGHGVFVDTAEG-ERFCGAWRHGIRSGAGTLVQGRLEKEKRQKGGEDTGEEAERED-EASSELAWYSGNFEHGLPHGDGTMTYCGATFCXXXXXXXXXXXX-KIDFGEKSGFSSGVFEGSWIDGVPCGSGRWWYKQSGVALDCTFEQGYSRKIW 408
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig841.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4Q6_ECTSI2.730e-2754.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig841contigA-nodosum_M_contig841:26500..27462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G4Q6
PFAMsMORN
Model size963
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.47e-28
EggNOG OGsCOG5253@1|root,KOG0229@2759|Eukaryota
Description1-phosphatidylinositol-4-phosphate 5-kinase activity
Cds size963
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870202.2693324-CDS-A-nodosum_M_contig841:26499..274621680870202.2693324-CDS-A-nodosum_M_contig841:26499..27462Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig841 26500..27462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig841.6.1prot_A-nodosum_M_contig841.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig841 26500..27462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig841.6.1

>prot_A-nodosum_M_contig841.6.1 ID=prot_A-nodosum_M_contig841.6.1|Name=mRNA_A-nodosum_M_contig841.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=321bp
PPVPAELQRFLEQHRPPQPETANGSTSPKRPPSRVSFKSGLVYEGEGELR
RHDVVPHGWGRVTLPEGAAYEGEWLGGRVHGKGALRLPNGNAYWGSWALG
RKHGLGTFVWADGSRHDGYYRAGIKSGVGTLHYASGAVFEGQFEADRRHG
VGRLELPEGSSYDGEWTRDVPHGLGVFVDAARGGERFEGSWERGVRSGGG
RLVQGWAERGQGGENLADASSSASADGFEDSAWYSGNFKDGLPHGEGAMG
YGLATFCGHVERGEWTGGGGVLDLGDGRGSFEGTFSNGLPRGSGRWRWEE
SGVERDCTFEEGYASNIWPS*
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mRNA from alignment at A-nodosum_M_contig841:26500..27462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig841.6.1 ID=mRNA_A-nodosum_M_contig841.6.1|Name=mRNA_A-nodosum_M_contig841.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=963bp|location=Sequence derived from alignment at A-nodosum_M_contig841:26500..27462- (Ascophyllum nodosum dioecious)
CCACCAGTTCCAGCCGAGCTGCAGCGTTTCCTCGAACAGCACCGACCGCC
ACAGCCCGAAACCGCGAACGGCAGCACCAGTCCCAAGCGGCCACCATCCC
GGGTCAGCTTCAAGTCTGGGTTAGTCTACGAGGGTGAGGGTGAGCTCCGC
CGGCATGATGTTGTGCCGCACGGTTGGGGGCGTGTTACCCTCCCGGAAGG
CGCTGCGTACGAGGGCGAGTGGTTGGGTGGTCGTGTTCATGGAAAGGGTG
CCCTCCGTCTCCCCAACGGCAACGCTTACTGGGGATCGTGGGCGCTCGGG
CGCAAACATGGACTGGGAACCTTCGTATGGGCAGACGGGTCACGCCATGA
CGGTTACTACAGGGCGGGGATCAAGAGCGGGGTTGGCACGCTGCACTACG
CCAGCGGCGCCGTTTTCGAGGGCCAGTTCGAGGCCGACCGCAGGCACGGC
GTCGGCCGCCTCGAGCTACCGGAGGGATCCTCTTACGATGGCGAATGGAC
AAGAGACGTCCCTCACGGGCTCGGGGTGTTCGTCGATGCCGCGCGCGGCG
GTGAGCGGTTCGAGGGCAGCTGGGAAAGAGGAGTGAGGTCCGGTGGAGGT
CGGCTGGTACAGGGATGGGCGGAAAGGGGACAGGGTGGTGAGAACCTGGC
GGACGCCTCATCGTCGGCGAGCGCAGACGGTTTTGAAGATTCGGCGTGGT
ACTCCGGCAACTTCAAGGATGGCCTGCCGCACGGCGAGGGGGCGATGGGC
TACGGTCTCGCCACGTTCTGTGGGCACGTGGAACGCGGAGAGTGGACTGG
TGGTGGGGGGGTGCTCGATCTGGGCGACGGGAGGGGAAGCTTCGAGGGAA
CGTTCAGCAACGGCCTTCCGAGGGGCAGCGGAAGATGGCGCTGGGAGGAA
TCCGGTGTCGAGAGGGATTGCACCTTCGAGGAGGGCTACGCCTCGAATAT
CTGGCCGAGCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig841:26500..27462-

>mRNA_A-nodosum_M_contig841.6.1 ID=mRNA_A-nodosum_M_contig841.6.1|Name=mRNA_A-nodosum_M_contig841.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=963bp|location=Sequence derived from alignment at A-nodosum_M_contig841:26500..27462- (Ascophyllum nodosum dioecious)
CCACCAGTTCCAGCCGAGCTGCAGCGTTTCCTCGAACAGCACCGACCGCC
ACAGCCCGAAACCGCGAACGGCAGCACCAGTCCCAAGCGGCCACCATCCC
GGGTCAGCTTCAAGTCTGGGTTAGTCTACGAGGGTGAGGGTGAGCTCCGC
CGGCATGATGTTGTGCCGCACGGTTGGGGGCGTGTTACCCTCCCGGAAGG
CGCTGCGTACGAGGGCGAGTGGTTGGGTGGTCGTGTTCATGGAAAGGGTG
CCCTCCGTCTCCCCAACGGCAACGCTTACTGGGGATCGTGGGCGCTCGGG
CGCAAACATGGACTGGGAACCTTCGTATGGGCAGACGGGTCACGCCATGA
CGGTTACTACAGGGCGGGGATCAAGAGCGGGGTTGGCACGCTGCACTACG
CCAGCGGCGCCGTTTTCGAGGGCCAGTTCGAGGCCGACCGCAGGCACGGC
GTCGGCCGCCTCGAGCTACCGGAGGGATCCTCTTACGATGGCGAATGGAC
AAGAGACGTCCCTCACGGGCTCGGGGTGTTCGTCGATGCCGCGCGCGGCG
GTGAGCGGTTCGAGGGCAGCTGGGAAAGAGGAGTGAGGTCCGGTGGAGGT
CGGCTGGTACAGGGATGGGCGGAAAGGGGACAGGGTGGTGAGAACCTGGC
GGACGCCTCATCGTCGGCGAGCGCAGACGGTTTTGAAGATTCGGCGTGGT
ACTCCGGCAACTTCAAGGATGGCCTGCCGCACGGCGAGGGGGCGATGGGC
TACGGTCTCGCCACGTTCTGTGGGCACGTGGAACGCGGAGAGTGGACTGG
TGGTGGGGGGGTGCTCGATCTGGGCGACGGGAGGGGAAGCTTCGAGGGAA
CGTTCAGCAACGGCCTTCCGAGGGGCAGCGGAAGATGGCGCTGGGAGGAA
TCCGGTGTCGAGAGGGATTGCACCTTCGAGGAGGGCTACGCCTCGAATAT
CTGGCCGAGCTGA
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