mRNA_A-nodosum_M_contig84.86.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig84.86.1
Unique NamemRNA_A-nodosum_M_contig84.86.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig84.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig84contigA-nodosum_M_contig84:405526..410661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1083
Hectar predicted targeting categoryother localisation
Exons2
Cds size1062
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870194.5665584-UTR-A-nodosum_M_contig84:405525..4055461680870194.5665584-UTR-A-nodosum_M_contig84:405525..405546Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig84 405526..405546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870194.57685-CDS-A-nodosum_M_contig84:405546..4061621680870194.57685-CDS-A-nodosum_M_contig84:405546..406162Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 405547..406162 +
1680870194.587543-CDS-A-nodosum_M_contig84:410215..4106611680870194.587543-CDS-A-nodosum_M_contig84:410215..410661Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 410216..410661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig84.86.1prot_A-nodosum_M_contig84.86.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig84 405547..410661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig84.86.1

>prot_A-nodosum_M_contig84.86.1 ID=prot_A-nodosum_M_contig84.86.1|Name=mRNA_A-nodosum_M_contig84.86.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=354bp
MAEPVVAPEEPTAEAVGDAVPDVTDAMSETSASETTAEQPGEDVAEEASA
SEQSVPPAAEDAPAEKSEATMPPDVTTAPEPISEAVTEEPEAEEVESPTD
VAQPVDASRDVAADESTPVVESPTDVPAEEDEAGPTAPEEETQADETPKE
TQMADDPASAKPSSDDEAPVTRDVDEIGEDTETEHTTDAPAEEIPVLSQP
DMASAGPAEEPAMAEPVVAPEEPTAEAVDDAVPDVTDAMSETSASETTEE
QPGEDVAEEASASEQSVPPAAEDAPAEESEATMPPDVTTAPEPISEAVTE
EPEAEEVESPTDVAQPVDASRDVAADESTPVVESPTDVPAEEDEAGPTAP
EEET
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mRNA from alignment at A-nodosum_M_contig84:405526..410661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig84.86.1 ID=mRNA_A-nodosum_M_contig84.86.1|Name=mRNA_A-nodosum_M_contig84.86.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5136bp|location=Sequence derived from alignment at A-nodosum_M_contig84:405526..410661+ (Ascophyllum nodosum dioecious)
GGTCCGGCAGAAGAACCAGCGATGGCAGAGCCCGTCGTTGCCCCCGAGGA
ACCCACGGCGGAAGCAGTGGGCGACGCCGTGCCTGACGTTACTGACGCCA
TGTCGGAAACTTCGGCTTCGGAGACCACGGCGGAGCAGCCAGGGGAGGAC
GTTGCAGAAGAAGCTTCCGCTAGCGAGCAGTCTGTGCCACCTGCCGCGGA
AGACGCTCCTGCGGAGAAATCCGAAGCAACCATGCCGCCAGATGTGACCA
CCGCGCCGGAGCCCATCTCGGAAGCGGTGACGGAGGAGCCTGAGGCAGAA
GAGGTGGAGTCACCCACCGATGTGGCACAACCCGTTGATGCATCACGCGA
TGTCGCGGCCGATGAATCCACTCCGGTGGTCGAATCGCCAACCGACGTCC
CGGCAGAGGAAGATGAAGCTGGACCGACTGCGCCAGAGGAGGAAACCCAG
GCCGATGAAACACCGAAGGAGACCCAAATGGCCGACGATCCGGCCAGCGC
GAAGCCGTCTAGTGACGACGAAGCCCCGGTAACACGAGACGTCGACGAGA
TTGGGGAGGACACGGAGACGGAGCACACGACGGATGCTCCTGCAGAGGAG
ATTCCCGTGCTTTCTCAGCCAGACATGGCTAGTGCCGGTGGGTTTAGTTT
CCATGGAAGGTGTAAATTTCACATACTGATAGCGATCGTATTGGGTAGCG
TACAATTTGATTCCAACTCAGAGAGTAAAATCGTCGTTCGAGCTTTAAAC
CTGCTTCGTCCGTTATTTCAGGTCCGGCAGAAGAACCAGCGATGGCAGAG
CCCGTCGTCGcCCCCGAGGAACCCACGGCGGAAGCAGTCGGCGACACCGT
GCCCGACGTTACCGACGCCGTGTCGGAAACTTCGGCTCCGGAGACCACGG
AGGAGCAGCCAGTGGAGGACGTTGCAGAAGAAGCTTCCGCTAGCGAGCAG
TCTGAGCCACCTGCCGCGGAAAACGCTTCTGCGGAGGAGTCCAAAGCAAC
CATGCCGCCAGATGTGACCGCCGCGCCGGAGCCCATCTCGGAAGCGGGGA
CGGAGGAGCCTGAGGCAGAAGAGATCGATTCATCCACCGACATCGTACAG
CCTACGGTTGATGTCGCGGCCGATGAATCCACTCCGGTGGTCGAATCGCC
AACCGACGTCCCGGCAGAGGAAGATGAAGCTGGACCGACTGCGCCAGAGG
AGGAAACCCAGGCCGATGAAACGCCGAAGGAGATCCAAATGGCCGACGCT
CCGGCCAGCGCGGAGCCGTCTAGTGACGACGAAGCCCTGGTAACATCGGA
CGTCGCCGAGGTTGCGGAGGACACGGAGACGGAGCACACGACGGATGCTC
CTGCAGAGGAGATTCCCGCGCCTCCTCAGCCAGACATGGCTAGTGCCGGT
GGGTGTAGTTTCCATAGAAGGTGTAAATTTCACATACTGATAGCGATCGT
ATTGGGTAGCGTACAATTTCATTCCGTCTCAGAGAACGAGATCGTCGTTC
GAGCTTTAAACCTGCTTCGTCCGTTATTTCAGGTCCGGCAGAAGAACCAG
CGATGGCAGAGCCCGTCGTCGACCCCGAGGAACCCACGGCGGAAGCAGTG
GGCCACGCCGTGCCTGACGTTACCGACGCCGTGTCGGAAACTTCGGCTCC
AGAGGCCACGGAGAATCAGCCAGTGGGGGACGTTGCAGAAGAAGCTGCCG
CTAGCGAGCAGTCTGAGTCACCTGCCGCGGAAGCCGCTCCTGCGGAGGAA
TCCGAAGTAACCATATCGCCGGACGTGACCGCCGCGCCGGAGCCCATCTC
GGAAGCGGGGACGGAGGAGCCTGAGGCAGGAGAGGTGGAGTCACCCACCG
ATGTGGCACAGCCCGTCGATGCATCACGCGATATCGAACAGCCTACGGTT
GATGTGGCGGCCGATGGATCCACTCCGGTGGTCGAATCACCAACCGACGT
GCCGGCAGAGGAAGATGAAGCTGGACCGACTGCGCCAGAGGAGGAAACCC
AGGCCGATGAAACGCCGAAGGAGACCCAAATGGCCGACGCTCCGGCCGGC
GCGGAGCCGTCTAGTGACGACGAAGCCCCGGTAACACGAGACGTCGCCGA
GGTTGCGGGGGACACGGAGACAGAGCACACGACGGATGCTCCTGCAGAGG
AGATTCCCGCGCCTTCTCAGCCAGACATGGCTAGTGCCGGTGGGTGTAGT
TTCCATAGAAGGTGTAAATTTCACATACTGATAGCGATTGTATTGGGTAG
CTTTAAAGTTGATTCCGTCTCAGAGATTGAAATCGTCGTTCGAGCTTTAA
ATCTGCTTCGTTCGTTATTTCAGGTCCGGCAGAGGAACCAGCGATGGCAG
AGCCCGTCGTCGCGCCCGAGGAACCCACGGCGGcACCAGTGGGCGACGCC
GTGCCTGACATTACCGACGCCGTGTCGGAAAATTCGGCTCCGGAGGCCAC
GGAGGAGCAGCCAGGGGAGGACGTTGCAGAAGAAGCTGCCGCTAGCGAGC
AGTCTGTGCCACCTGCCGCGGAAGATACTCCTGCGGAGGAATCCGAGGAA
ACCATGTCGCCAGATGTGACCGCCACGCCGGAACCCATCCCGGAAGCGGG
GACGGAGGAGCCTGAGGCAGAAGAGCTCGATTCAACCACCGATGTGGCAC
AATCCGTCTATGCATCACGCGATATCGTACAGCCTACGGTTGATGTCGCG
GCCGATGAATCCACTCCGGTGGTCGAATCACCAACCGACGTCCCGGCAGA
GGAAGATGAAGCTGGACCGACTGCGCCAGAGGAGGAAACCCAGGCCGATG
AAACGCCGAAGGAGACCCAAATGGCCGACGCTCCGGCCGGCGCGGAGCCA
TCTAGTGACGACGAAGCCTCGGTAACACGAGACGTCACCGAGATTGCGGA
GGGCACGGAGACGGAGCACACGACGGATGCTCCTGCAGAGGAAATTCCCG
TGCCTTCTCAGCCAGACATGGCTAGTGCCGGTGGGTGTAGTTAATTGTAG
AAGGTGTAAATTTCCCAATCTGATAGCGATTGTATTGGGTAGCGTACAAT
TTGATTCCGTCTCAGAGAGTGAGATCGTCGTTCAAGCTTTAAACCGGCTT
CGTCCGTTATTTCAGGTCCGGCAGAAGAACCAGCGATGGCAGAGCCCGTC
GTCGCCCCCGAGGAACCCACGGCGGAAGCAGTGGGCCACGCCGTGCCCGA
CGTTACCGACGCCGTGTCGGAAACTTCGATTCCGGAGGCCACGGAGGAGC
AGCCAGTGGAGGACGTTGCAGAAGAAGCTTCCTCTAGCGAGCAGTCTGAG
CCACCTGCCGTGGAAGACGCTCCTGCGGAGGAATCCGAAGCAACCATGCC
GCCAGATGTGACCGCCGCGCCGGAGCCCATCTCGGAAGCGGTGACGGAGG
AGCCTAAGGCAGAAGAGGTGGAGTCACCCACCGATGTGGCACAGCCCGTC
GATGCATCACGCGATATCGTACAGCCCACGGTTGATGTCGCGGCCGATGA
ATCCACTCCGGTGGTCGAATCGCCAACCGACGTGCCGGCAGAGGAAGATG
AAGCTGGACCGACTGCGCCAGAGAAGGAAACCCAGGCCGATGAAACGCCG
AAGGAGATCCAAATGGCCGACGCTCCGGCCGGCGCGGAGCCGTCTAGTGA
CGACGAAGCCCCGGTAACACGAGACGTCGCCGAGGTTGCGGAGGACACGG
AGACGGAGCACACGACGGATGCTCCTGCAGAGGAGATTCCCGCGCCTTCT
CAGCCAGACATGGCTAGTGCCGGTGGGTGTAGTTTCCATAGGAGGTGTAA
ATTTCACATACTGATAGCGATTGTATTGGGTAGCGTACAATTTGATTCTG
TCTCAGAGAGTGAGATCGTCGTTCGAGCTTTAAACCTGCTTCGTCCGTTA
TTTCAGGTCCGGCAGAAGAACCAGCGATGGCAGAGCCCGTCGTCGCCCCC
GAGGAACCCACGGCGGACGCAGTGGACGACGCCGTGCCTGACGTTACCGA
CGCCGTGTCGGAAACTTCGATTCCGGAGACCACGGAGGAGCAGCCAGTGG
AGGACGTTGCAGAAGAAGCTTCCGCTAGCGAGCAGTCTGTGCCACCTGCC
GCGGAAGACGCTCCTGCGGAGGAATCACAAGCAACCATGCCGCCAGATGT
GACCGCCGCGCCGGAGCCCATCTCGGAAGCGGTGACGGAGGAGCCTGAGG
CAGAAGAGGTGGAGTCACCCACCGATGTGGCACAGCCCGTCGATGCATCA
CGCGATATCGTACAGCCTACGGTTGATGTCACGGCCGATGAATCCACTCC
GGTGGTCGAATCGCCAACCGACGTGCCGGCAGAGGAAGATGAAGCTGGAC
CGACTGCGCCAGAGGAGGAAACCCAGGCCGATGAAACGCTGAAGGACATC
CAAATGGCCGACGCTCCGGCCGGCGCGGAGCCGTCTAGTGACGACGAAGC
CCCGGTAACACGAGACGTCGCCGAGGTTGCGGAGGACACGGAGACGGAGC
ACACGACGGATGCTCCTGCAGAGGAGATTCCCGCGCCTTCTCAGCCAGAC
ATGGCTAGTGCCGGTGGGTGTAGTTTCCATAGAAGGTATAAATTTCACAT
ACTGATAGCGATTTGATTGGGTAGCGTACAATTTGATTCCGTCTCAAGAT
CGTCGTTCGAGCTTTAAACCTGCTTTGTCCGTTATTTCAGGTCCGGCAGA
GGAACCAGCGATGGCAGAGCCCGTCGTCGCCCCCGAGGAACCCACGGCGG
AAGCAGTCGACGATGCCGTGCCTGACGTTACCGACGCCATGTCGGAAACT
TCGGCTTCGGAGACCACGGAGGAGCAGCCAGGGGAGGACGTTGCAGAAGA
AGCTTCCGCTAGCGAGCAGTCTGTGCCACCTGCCGCGGAAGACGCTCCTG
CGGAGGAATCCGAAGCAACCATGCCGCCAGATGTGACCACCGCGCCGGAG
CCCATCTCGGAAGCGGTGACGGAGGAGCCTGAGGCAGAAGAGGTGGAGTC
ACCCACCGATGTGGCACAACCCGTCGATGCATCACGCGATGTCGCGGCCG
ATGAATCCACTCCGGTGGTCGAATCGCCAACCGACGTCCCGGCAGAGGAA
GATGAAGCTGGACCGACTGCGCCAGAGGAGGAAACC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig84:405526..410661+

>mRNA_A-nodosum_M_contig84.86.1 ID=mRNA_A-nodosum_M_contig84.86.1|Name=mRNA_A-nodosum_M_contig84.86.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at A-nodosum_M_contig84:405526..410661+ (Ascophyllum nodosum dioecious)
ATGGCAGAGCCCGTCGTTGCCCCCGAGGAACCCACGGCGGAAGCAGTGGG
CGACGCCGTGCCTGACGTTACTGACGCCATGTCGGAAACTTCGGCTTCGG
AGACCACGGCGGAGCAGCCAGGGGAGGACGTTGCAGAAGAAGCTTCCGCT
AGCGAGCAGTCTGTGCCACCTGCCGCGGAAGACGCTCCTGCGGAGAAATC
CGAAGCAACCATGCCGCCAGATGTGACCACCGCGCCGGAGCCCATCTCGG
AAGCGGTGACGGAGGAGCCTGAGGCAGAAGAGGTGGAGTCACCCACCGAT
GTGGCACAACCCGTTGATGCATCACGCGATGTCGCGGCCGATGAATCCAC
TCCGGTGGTCGAATCGCCAACCGACGTCCCGGCAGAGGAAGATGAAGCTG
GACCGACTGCGCCAGAGGAGGAAACCCAGGCCGATGAAACACCGAAGGAG
ACCCAAATGGCCGACGATCCGGCCAGCGCGAAGCCGTCTAGTGACGACGA
AGCCCCGGTAACACGAGACGTCGACGAGATTGGGGAGGACACGGAGACGG
AGCACACGACGGATGCTCCTGCAGAGGAGATTCCCGTGCTTTCTCAGCCA
GACATGGCTAGTGCCGGTCCGGCAGAGGAACCAGCGATGGCAGAGCCCGT
CGTCGCCCCCGAGGAACCCACGGCGGAAGCAGTCGACGATGCCGTGCCTG
ACGTTACCGACGCCATGTCGGAAACTTCGGCTTCGGAGACCACGGAGGAG
CAGCCAGGGGAGGACGTTGCAGAAGAAGCTTCCGCTAGCGAGCAGTCTGT
GCCACCTGCCGCGGAAGACGCTCCTGCGGAGGAATCCGAAGCAACCATGC
CGCCAGATGTGACCACCGCGCCGGAGCCCATCTCGGAAGCGGTGACGGAG
GAGCCTGAGGCAGAAGAGGTGGAGTCACCCACCGATGTGGCACAACCCGT
CGATGCATCACGCGATGTCGCGGCCGATGAATCCACTCCGGTGGTCGAAT
CGCCAACCGACGTCCCGGCAGAGGAAGATGAAGCTGGACCGACTGCGCCA
GAGGAGGAAACC
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