mRNA_A-nodosum_M_contig8351.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8351.4.1
Unique NamemRNA_A-nodosum_M_contig8351.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8351.4.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.470e-28
Identity = 53/94 (56.38%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    7 GVIIQDNTCFTNRYHLKLCLIIGVDSENKSRVLAQAFLSDEQTASFEYVLNHFVKICGGYPQVIITDADTAMTCTVSAILPG--TTYLYCLWHI 282
            GV+IQDNTC TNRY+ KLCL +GVDSENK++V AQ F S+E T +F++    F+ ICGG+P+VIITD+D AM  ++  + P   TT+L C WHI
Sbjct:   83 GVVIQDNTCLTNRYNNKLCLFVGVDSENKTQVFAQGFFSNESTEAFDFANKFFLDICGGHPKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHI 176
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BLAST of mRNA_A-nodosum_M_contig8351.4.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.480e-24
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:    7 GVIIQDNTCFTNRYHLKLCLIIGVDSENKSRVLAQAFLSDEQTASFEYVLNHFVKICGGY--------------PQVIITDADTAMTCTVSAILPGTTYLYCLWHI 282
            G++IQDNTC  NRY  KLCL +GVDSENK+ + AQ  LS+EQ +SF++     ++I GG               PQVIITDAD AMT +V+ ++P T +LY  WHI
Sbjct:  856 GIVIQDNTCLINRYDFKLCLFVGVDSENKTGIFAQGLLSNEQISSFDFANRFLLEIRGGTQSHHLLPTPPTPHPPQVIITDADAAMTSSVAELMPHTKHLYSSWHI 961
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BLAST of mRNA_A-nodosum_M_contig8351.4.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.390e-21
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:   43 RYHLKLCLIIGVDSENKSRVLAQAFLSDEQTASFEYVLNHFVKICGGYPQVIITDADTAMTCTVSAILPGTT-YLYCLWHI 282
            RY +   L IGVDSENK+ V AQ F SD+ + ++++ L H+  ICGG P+VIITDAD  MT  V   LP TT +LYCLWH+
Sbjct:  152 RYGMHFMLFIGVDSENKTVVFAQGFFSDQSSDTYQWALKHYCTICGGQPEVIITDADAGMTHAVETFLPSTTVHLYCLWHV 232
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BLAST of mRNA_A-nodosum_M_contig8351.4.1 vs. uniprot
Match: A0A015IDJ1_RHIIW (MULE domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015IDJ1_RHIIW)

HSP 1 Score: 87.0 bits (214), Expect = 2.870e-19
Identity = 39/92 (42.39%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:   10 VIIQDNTCFTNRYHLKLCLIIGVDSENKSRVLAQAFLSDEQTASFEYVLNHFVKICGGY-PQVIITDADTAMTCTVSAILPGTTYLYCLWHI 282
            VI+ DNT  TN+YH+ LC+ +GVD+ N +R+ AQA LSDE +AS+ +VL   ++   G  P +II+DADT +   +  +LP   +++C+++I
Sbjct:   70 VIVTDNTSRTNKYHMALCIFVGVDNRNYTRIFAQALLSDEISASYTWVLEQLLEANNGITPTIIISDADTGLDVALKTLLPHIKHIHCIFYI 161
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BLAST of mRNA_A-nodosum_M_contig8351.4.1 vs. uniprot
Match: A0A397IQ74_9GLOM (MULE domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IQ74_9GLOM)

HSP 1 Score: 86.7 bits (213), Expect = 8.020e-18
Identity = 40/93 (43.01%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    4 WGVIIQDNTCFTNRYHLKLCLIIGVDSENKSRVLAQAFLSDEQTASFEYVLNHFVKICGGYPQVIITDADTAMTCTVSAILPGTTYLYCLWHI 282
            + VII DNT  TN+Y+  L L I +++ NKSR+ AQAF+ DE++ S+E++L   ++ C   P   +TDAD AM   VS + P T ++ CL+H+
Sbjct:  237 YNVIIHDNTARTNKYNYSLSLFILIENYNKSRLAAQAFMQDERSESYEWLLQCCLEACEITPSTFVTDADPAMIAAVSTVFPRTHHMQCLFHL 329
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BLAST of mRNA_A-nodosum_M_contig8351.4.1 vs. uniprot
Match: A0A397HDF0_9GLOM (MULE domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397HDF0_9GLOM)

HSP 1 Score: 83.2 bits (204), Expect = 5.780e-17
Identity = 38/93 (40.86%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    4 WGVIIQDNTCFTNRYHLKLCLIIGVDSENKSRVLAQAFLSDEQTASFEYVLNHFVKICGGYPQVIITDADTAMTCTVSAILPGTTYLYCLWHI 282
            + VII DNT  TN+Y+  L L I +++ NKSR+ AQAF+ DE++ S+E++L+ +++ C   P   +TDAD  M   VS + P T ++ CL+++
Sbjct:   70 YNVIIHDNTARTNKYNYPLSLFILINNYNKSRLAAQAFMQDERSESYEWLLHCYLEACEITPLTFVTDADPTMIAAVSTVFPRTHHMQCLFNL 162
[Close]
BLAST of mRNA_A-nodosum_M_contig8351.4.1 vs. uniprot
Match: A0A015IA55_RHIIW (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015IA55_RHIIW)

HSP 1 Score: 83.6 bits (205), Expect = 9.780e-17
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:   10 VIIQDNTCFTNRYHLKLCLIIGVDSENKSRVLAQAFLSDEQTASFEYVLNHFVKICGGYPQVIITDADTAMTCTVSAILPGTTYLYCLWH 279
            V++ DNT  TN+Y+  L L I VD+  KSR+ AQAFL+DE   S+E+VL   +   G  P+VI+TD D AM    S +   T +++C+WH
Sbjct:  314 VVLHDNTSRTNKYNFPLSLFIIVDNNGKSRLGAQAFLTDETQESYEWVLQQTLDATGLEPKVILTDMDPAMDAACSIVYKNTYHIHCIWH 403
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BLAST of mRNA_A-nodosum_M_contig8351.4.1 vs. uniprot
Match: UPI000D08FE56 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D08FE56)

HSP 1 Score: 82.4 bits (202), Expect = 2.490e-16
Identity = 44/92 (47.83%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   10 VIIQDNTCFTNRYHLKLCLIIGVDSENKSRVLAQAFLSDEQTASFEYVLNHFVKIC-GGYPQVIITDADTAMTCTVSAILPGTTYLYCLWHI 282
            VII D T  TNRY L    ++G+++  ++ V   AFLSDE TASF ++L  F+    GG P++IITD D AM   +S ILP T + YC WHI
Sbjct:  146 VIIFDTTYQTNRYSLIFAPLMGINNHGQTIVFGAAFLSDETTASFVWLLKEFLNAMPGGPPKMIITDQDPAMEKAISEILPDTFHRYCSWHI 237
[Close]
BLAST of mRNA_A-nodosum_M_contig8351.4.1 vs. uniprot
Match: UPI0018F80A11 (protein FAR1-RELATED SEQUENCE 5-like isoform X2 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F80A11)

HSP 1 Score: 79.7 bits (195), Expect = 1.630e-15
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   10 VIIQDNTCFTNRYHLKLCLIIGVDSENKSRVLAQAFLSDEQTASFEYVLNHFVKIC-GGYPQVIITDADTAMTCTVSAILPGTTYLYCLWHI 282
            V++ D T  TNRY L     +GV+   +S +LA AFLSDE T SFE++L   + +   G P++IITD D AM+  ++ + P T + YC+WHI
Sbjct:  146 VLVFDTTYNTNRYGLIFAPFVGVNHHGQSILLACAFLSDETTESFEWLLQQLLTVMPAGAPKMIITDQDPAMSRAIAELCPNTIHRYCMWHI 237
[Close]
BLAST of mRNA_A-nodosum_M_contig8351.4.1 vs. uniprot
Match: UPI0018F8476C (protein FAR1-RELATED SEQUENCE 5-like isoform X1 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F8476C)

HSP 1 Score: 79.7 bits (195), Expect = 2.210e-15
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   10 VIIQDNTCFTNRYHLKLCLIIGVDSENKSRVLAQAFLSDEQTASFEYVLNHFVKIC-GGYPQVIITDADTAMTCTVSAILPGTTYLYCLWHI 282
            V++ D T  TNRY L     +GV+   +S +LA AFLSDE T SFE++L   + +   G P++IITD D AM+  ++ + P T + YC+WHI
Sbjct:  146 VLVFDTTYNTNRYGLIFAPFVGVNHHGQSILLACAFLSDETTESFEWLLQQLLTVMPAGAPKMIITDQDPAMSRAIAELCPNTIHRYCMWHI 237
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8351.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF6_ECTSI1.470e-2856.38Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5K454_9PHAE1.480e-2449.06SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEJ0_9PHAE6.390e-2154.32SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A015IDJ1_RHIIW2.870e-1942.39MULE domain-containing protein n=1 Tax=Rhizophagus... [more]
A0A397IQ74_9GLOM8.020e-1843.01MULE domain-containing protein n=1 Tax=Diversispor... [more]
A0A397HDF0_9GLOM5.780e-1740.86MULE domain-containing protein n=1 Tax=Diversispor... [more]
A0A015IA55_RHIIW9.780e-1744.44Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
UPI000D08FE562.490e-1647.83protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Rosa ... [more]
UPI0018F80A111.630e-1543.48protein FAR1-RELATED SEQUENCE 5-like isoform X2 n=... [more]
UPI0018F8476C2.210e-1543.48protein FAR1-RELATED SEQUENCE 5-like isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8351contigA-nodosum_M_contig8351:24469..25102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLF6
PFAMsMULE
Model size282
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.41e-29
EggNOG OGs2CMGX@1|root,2QQB8@2759|Eukaryota
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870186.3127887-CDS-A-nodosum_M_contig8351:24468..245121680870186.3127887-CDS-A-nodosum_M_contig8351:24468..24512Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8351 24469..24512 +
1680870186.3237557-CDS-A-nodosum_M_contig8351:24651..247991680870186.3237557-CDS-A-nodosum_M_contig8351:24651..24799Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8351 24652..24799 +
1680870186.334898-CDS-A-nodosum_M_contig8351:25012..251021680870186.334898-CDS-A-nodosum_M_contig8351:25012..25102Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8351 25013..25102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8351.4.1prot_A-nodosum_M_contig8351.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8351 24469..25102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8351.4.1

>prot_A-nodosum_M_contig8351.4.1 ID=prot_A-nodosum_M_contig8351.4.1|Name=mRNA_A-nodosum_M_contig8351.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=94bp
MWGVIIQDNTCFTNRYHLKLCLIIGVDSENKSRVLAQAFLSDEQTASFEY
VLNHFVKICGGYPQVIITDADTAMTCTVSAILPGTTYLYCLWHI
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mRNA from alignment at A-nodosum_M_contig8351:24469..25102+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8351.4.1 ID=mRNA_A-nodosum_M_contig8351.4.1|Name=mRNA_A-nodosum_M_contig8351.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=634bp|location=Sequence derived from alignment at A-nodosum_M_contig8351:24469..25102+ (Ascophyllum nodosum dioecious)
ATGTGGGGTGTCATCATCCAGGACAACACTTGCTTCACAAACCGGTGAGC
GACTGTTGTGATGGATGGACCACTACATGGAAAGGCTTGTGGTCGCAATA
CAAGCGTGAGCGACCATCGCCGTTGTTCCGCGTCTTCACTGTACCGGTCC
CATTAAAGGTTCGACTGTTTTACACATCGTCAGGTACCACTTGAAGCTGT
GCTTGATAATCGGGGTCGATTCGGAGAACAAGTCGCGGGTCTTGGCGCAA
GCTTTCCTCTCTGACGAGCAGACGGCTTCGTTTGAGTACGTTCTGAACCA
CTTCGTCAAGATATGCGGCGGTTACCCACAGGTAAGTCACGCGGGAACAA
CCAATCGTTTTGAGCGTACGTCGTCTGGTGGGTTCTATATTCGAGCGTGT
CTCATGGGGAGGTGTAAGTCTTGAGTATCTCAACAAATACTCCAGTGTTT
GATCCGCCACGATTTGACCCTCGATAACCTTTTTTAGAAAAAGATATGGG
GTCTATTCCTGATCGCGCCTACGCTACGTCTATGTTTACTGCAGGTGATA
ATCACGGATGCTGACACTGCGATGACCTGCACTGTGTCAGCTATTTTGCC
CGGTACTACGTACCTTTACTGCCTTTGGCACATC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8351:24469..25102+

>mRNA_A-nodosum_M_contig8351.4.1 ID=mRNA_A-nodosum_M_contig8351.4.1|Name=mRNA_A-nodosum_M_contig8351.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at A-nodosum_M_contig8351:24469..25102+ (Ascophyllum nodosum dioecious)
ATGTGGGGTGTCATCATCCAGGACAACACTTGCTTCACAAACCGGTACCA
CTTGAAGCTGTGCTTGATAATCGGGGTCGATTCGGAGAACAAGTCGCGGG
TCTTGGCGCAAGCTTTCCTCTCTGACGAGCAGACGGCTTCGTTTGAGTAC
GTTCTGAACCACTTCGTCAAGATATGCGGCGGTTACCCACAGGTGATAAT
CACGGATGCTGACACTGCGATGACCTGCACTGTGTCAGCTATTTTGCCCG
GTACTACGTACCTTTACTGCCTTTGGCACATC
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