mRNA_A-nodosum_M_contig1228.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1228.3.1
Unique NamemRNA_A-nodosum_M_contig1228.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1228.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1228contigA-nodosum_M_contig1228:173691..174208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size358
Hectar predicted targeting categoryother localisation
Exons2
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866656.7143047-CDS-A-nodosum_M_contig1228:173690..1737271680866656.7143047-CDS-A-nodosum_M_contig1228:173690..173727Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1228 173691..173727 +
1680866656.7264786-CDS-A-nodosum_M_contig1228:173888..1742081680866656.7264786-CDS-A-nodosum_M_contig1228:173888..174208Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1228 173889..174208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1228.3.1prot_A-nodosum_M_contig1228.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1228 173691..174208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1228.3.1

>prot_A-nodosum_M_contig1228.3.1 ID=prot_A-nodosum_M_contig1228.3.1|Name=mRNA_A-nodosum_M_contig1228.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp
MQRGEARDLFLAGQGTRMVPEGDSLKQKAVLLRESFSNEEVRGAYQAWNF
TDGAPQSETDISILKRWKSAREAFDHLEEGYESENEVATQTLYDKFHDFT
IPPNSNPIEALHALEDTNN
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mRNA from alignment at A-nodosum_M_contig1228:173691..174208+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1228.3.1 ID=mRNA_A-nodosum_M_contig1228.3.1|Name=mRNA_A-nodosum_M_contig1228.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=518bp|location=Sequence derived from alignment at A-nodosum_M_contig1228:173691..174208+ (Ascophyllum nodosum dioecious)
ATGCAGCGCGGCGAAGCTAGAGATTTATTTCTCGCAGGTATAGCTGCACA
CGATGGTGATGGTGTTTTGAGATCTGGTTTTCAGAGACAGCTCCGTGTTG
TTCGACCTGCACTGAAAAGAGAGAAAGGAGAATAAAAAAAATTAAGCATG
GATTTCTATTGAAAGCAAATATGCTGGACATCTCTGGCCACTCCGTAGGT
CAGGGGACACGAATGGTACCAGAAGGAGATTCGCTCAAACAGAAGGCCGT
GTTGTTACGGGAGAGTTTTTCCAATGAGGAAGTCAGAGGGGCGTACCAAG
CGTGGAACTTTACAGACGGAGCGCCCCAGAGTGAGACGGATATATCAATC
TTGAAGAGATGGAAGTCGGCGAGAGAAGCTTTTGACCACCTTGAGGAGGG
GTACGAGTCGGAGAATGAGGTGGCGACTCAAACGCTATATGACAAATTCC
ATGACTTCACCATTCCCCCCAACAGCAACCCCATTGAGGCACTGCATGCA
CTAGAAGACACGAACAAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1228:173691..174208+

>mRNA_A-nodosum_M_contig1228.3.1 ID=mRNA_A-nodosum_M_contig1228.3.1|Name=mRNA_A-nodosum_M_contig1228.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig1228:173691..174208+ (Ascophyllum nodosum dioecious)
ATGCAGCGCGGCGAAGCTAGAGATTTATTTCTCGCAGGTCAGGGGACACG
AATGGTACCAGAAGGAGATTCGCTCAAACAGAAGGCCGTGTTGTTACGGG
AGAGTTTTTCCAATGAGGAAGTCAGAGGGGCGTACCAAGCGTGGAACTTT
ACAGACGGAGCGCCCCAGAGTGAGACGGATATATCAATCTTGAAGAGATG
GAAGTCGGCGAGAGAAGCTTTTGACCACCTTGAGGAGGGGTACGAGTCGG
AGAATGAGGTGGCGACTCAAACGCTATATGACAAATTCCATGACTTCACC
ATTCCCCCCAACAGCAACCCCATTGAGGCACTGCATGCACTAGAAGACAC
GAACAAC
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