mRNA_A-nodosum_M_contig1213.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1213.14.1
Unique NamemRNA_A-nodosum_M_contig1213.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1213.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1213contigA-nodosum_M_contig1213:237784..238094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866640.47403-UTR-A-nodosum_M_contig1213:237783..2377851680866640.47403-UTR-A-nodosum_M_contig1213:237783..237785Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1213 237784..237785 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866640.4837544-CDS-A-nodosum_M_contig1213:237785..2380941680866640.4837544-CDS-A-nodosum_M_contig1213:237785..238094Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1213 237786..238094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1213.14.1prot_A-nodosum_M_contig1213.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1213 237786..238094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1213.14.1

>prot_A-nodosum_M_contig1213.14.1 ID=prot_A-nodosum_M_contig1213.14.1|Name=mRNA_A-nodosum_M_contig1213.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=103bp
MSRHCSTVTRASRPQQQANVGYDGGAFSGDSSDGDSVSIGAVGGVDGRGD
GTTGDATWVQQQDGGIYGFGGTVYASGGDGGYGMSALPSQSYQQQDTSMV
FPW
back to top

mRNA from alignment at A-nodosum_M_contig1213:237784..238094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1213.14.1 ID=mRNA_A-nodosum_M_contig1213.14.1|Name=mRNA_A-nodosum_M_contig1213.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=311bp|location=Sequence derived from alignment at A-nodosum_M_contig1213:237784..238094+ (Ascophyllum nodosum dioecious)
ACATGAGCCGCCACTGCTCTACTGTTACCCGTGCTTCGCGCCCCCAGCAG
CAGGCCAACGTTGGTTATGACGGCGGTGCTTTCTCTGGCGACAGCAGCGA
TGGTGATAGTGTGAGCATTGGTGCCGTCGGTGGTGTCGACGGGAGAGGTG
ACGGTACTACAGGTGACGCCACATGGGTCCAACAGCAAGACGGTGGGATC
TACGGGTTTGGTGGAACTGTGTATGCTAGTGGCGGTGATGGTGGTTACGG
GATGTCTGCCCTCCCGTCCCAATCGTATCAACAGCAGGACACATCTATGG
TCTTTCCTTGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1213:237784..238094+

>mRNA_A-nodosum_M_contig1213.14.1 ID=mRNA_A-nodosum_M_contig1213.14.1|Name=mRNA_A-nodosum_M_contig1213.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=309bp|location=Sequence derived from alignment at A-nodosum_M_contig1213:237784..238094+ (Ascophyllum nodosum dioecious)
ATGAGCCGCCACTGCTCTACTGTTACCCGTGCTTCGCGCCCCCAGCAGCA
GGCCAACGTTGGTTATGACGGCGGTGCTTTCTCTGGCGACAGCAGCGATG
GTGATAGTGTGAGCATTGGTGCCGTCGGTGGTGTCGACGGGAGAGGTGAC
GGTACTACAGGTGACGCCACATGGGTCCAACAGCAAGACGGTGGGATCTA
CGGGTTTGGTGGAACTGTGTATGCTAGTGGCGGTGATGGTGGTTACGGGA
TGTCTGCCCTCCCGTCCCAATCGTATCAACAGCAGGACACATCTATGGTC
TTTCCTTGG
back to top